Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Sed04g0559 | ATGTCTGTCCTTCAATATCTCTTCCTCTTCTTCCTCTCTCTGTTTCTGTTTCTCTTCTTCATTCTAAAACAGACCAAAATTAAAAACACAAAAAAGGGTCATTTCCCCCCAAGCCCACCAAAGCTTCCAATCATAGGAAACTTACACCAACTTGGCAACCTCCCCCACAGATCCTTATGGCGCCTATCGCAACTCTACGGCTCCGTCATCACCCTCGACCTCGCCCGCGTCCGAACCACCGTCCTATCCTCTGCCGACGCTGCTCGAGCCCTCATGAAAACTCATGACCTCCAAAGCTGCACCCGACCGGGAACGCAAGCGGTCCAAAAACTCACACATAATTTCCTGGACATTGCCTTTTCGCCTTACGGGGATTACTGGCGGGAGATACGTAGAATCTGTATCCATGAGCTTTTCAGCAATAAGCGAGTCAAATCCTACGAGCCCATTCGAGACCAGGAAGTTGGTTTGCTTATGGAGTCGATCTCGGAGCTGGCTTGCACCGAAACCGCTGTGGATCTGACCGAGAAAGCCATTGGTTTCACTGCTGGTGTGGTTTTGAGGATTGCGTTTGGGAAGAGGTTTGGAGGGGAGGGGTTTCATGAGCTTGTTAGTGAAGCAGAGGCCTTATTGGGAAGTTACAGTGCTTGTGAGTTATTTTCTATCCCTTTTATTGGGAAGGTGGTTGATTGGCTAAGTGGATACCAAGCAAAACTTGACAAGGTTTTTAATGAGCTGAATGCTCTGTTTCAAGGAGTGATTGATGAACATCTTGTTCCTGATAGGCCTAAACCAGAGCAGGATGATATCATTGATGTGCTTCTTGATCTATGCAACCACAAACCTGCTCACCCTGGCTCTATTGTCATTACACATCAAAATATCAAAGCCATTCTTTTGAACATATTTTTGGCTGGATTAGACACAAGTTCCATCACAATAGTTTGGGCAATGGCAGAACTTGCTAAACAACCAAAATTAATGAAGAAAGCTCAACAAGAAATCAGAAACTATATAGGAATTAGAGGAAAGGTAATAGAAAATGACATAGAAGAGCTTTCATATCTGAAAATGATAGTGAAAGAGACTTTGAGGCTGCATCCACCAGCACCTCTTCTCCTTCCAAGAGAAATCATGTCCAATTTCGAAATCGAAGGCTACGACTTTAACCCGAAAACGGTGGTTCAAGTGAACGCGTGGGCAATTGGAAGAGATCCTAAATGCTGGAAAAATCCAGAGCAGTTTGCTCCAGAGAGATTTGAAGAGAGCTCCATTGATTACAAAGGACAGCATTTCGAGTTCTTGCCGTTCGGGGCTGGTCGAAGGATTTGTCCAGGGATATCTATGGGGGTGAAAATTGTGGAGGTTGCTTTGGCTAATCTTTTGTACCATTTTGATTGGAAGTTGCCTGAGGGGATGAAGGAGGAGGACTTGGACATGGAAGAGATTTCAGGTTTTAGTCTCACAATCTACAAGAAGGTTCCTCTCAAACTTGTGCCAGTTTCATATCATCCATGA | 1518 | 44.73 | MSVLQYLFLFFLSLFLFLFFILKQTKIKNTKKGHFPPSPPKLPIIGNLHQLGNLPHRSLWRLSQLYGSVITLDLARVRTTVLSSADAARALMKTHDLQSCTRPGTQAVQKLTHNFLDIAFSPYGDYWREIRRICIHELFSNKRVKSYEPIRDQEVGLLMESISELACTETAVDLTEKAIGFTAGVVLRIAFGKRFGGEGFHELVSEAEALLGSYSACELFSIPFIGKVVDWLSGYQAKLDKVFNELNALFQGVIDEHLVPDRPKPEQDDIIDVLLDLCNHKPAHPGSIVITHQNIKAILLNIFLAGLDTSSITIVWAMAELAKQPKLMKKAQQEIRNYIGIRGKVIENDIEELSYLKMIVKETLRLHPPAPLLLPREIMSNFEIEGYDFNPKTVVQVNAWAIGRDPKCWKNPEQFAPERFEESSIDYKGQHFEFLPFGAGRRICPGISMGVKIVEVALANLLYHFDWKLPEGMKEEDLDMEEISGFSLTIYKKVPLKLVPVSYHP | 505 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 4 | 4178928 | 4182542 | - | Sed0023771.1 | Sed04g0559 | 709162 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Sed04g0559 | 505 | PRINTS | E-class P450 group I signature | 63 | 82 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed04g0559 | 505 | PRINTS | E-class P450 group I signature | 444 | 467 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed04g0559 | 505 | PRINTS | E-class P450 group I signature | 398 | 422 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed04g0559 | 505 | PRINTS | E-class P450 group I signature | 181 | 199 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed04g0559 | 505 | PRINTS | E-class P450 group I signature | 314 | 340 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed04g0559 | 505 | PRINTS | E-class P450 group I signature | 357 | 375 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed04g0559 | 505 | PRINTS | E-class P450 group I signature | 434 | 444 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed04g0559 | 505 | PRINTS | E-class P450 group I signature | 294 | 311 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed04g0559 | 505 | Gene3D | Cytochrome P450 | 20 | 496 | IPR036396 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed04g0559 | 505 | ProSitePatterns | Cytochrome P450 cysteine heme-iron ligand signature. | 437 | 446 | IPR017972 | GO:0005506(InterPro)|GO:0016705(InterPro) | |
| Sed04g0559 | 505 | PANTHER | CYTOCHROME P450 71B11-RELATED | 15 | 501 | IPR050193 | - | |
| Sed04g0559 | 505 | SUPERFAMILY | Cytochrome P450 | 36 | 500 | IPR036396 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed04g0559 | 505 | FunFam | Cytochrome P450 83B1 | 21 | 499 | - | - | |
| Sed04g0559 | 505 | CDD | CYP71-like | 66 | 496 | - | - | |
| Sed04g0559 | 505 | PRINTS | P450 superfamily signature | 358 | 369 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed04g0559 | 505 | PRINTS | P450 superfamily signature | 305 | 322 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed04g0559 | 505 | PRINTS | P450 superfamily signature | 435 | 444 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed04g0559 | 505 | Pfam | Cytochrome P450 | 36 | 489 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Sed04g0559 | Sed-Chr4:4178928 | Sed04g0562 | Sed-Chr4:4246695 | 8.30E-140 | dispersed | |
| Sed06g1700 | Sed-Chr6:41712206 | Sed04g0559 | Sed-Chr4:4178928 | 7.50E-57 | dispersed | |
| Sed04g0559 | Sed-Chr4:4178928 | Sed04g0560 | Sed-Chr4:4224020 | 6.00E-146 | tandem | |
| Sed04g0559 | Sed-Chr4:4178928 | Sed06g1698 | Sed-Chr6:41668565 | 5.80E-141 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Sed04g0559 | - | - | - | 0.0 |