Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Sed04g0560 | ATGTTTGGCCTCGATCAGATTATGCAAAGCATTTTTATGTCGGTTCTTCTAATCTTGTTGCCTTCTTTACTTATAATATGGAAGAAGAAAGTTGCAATACACAACAACAAACTTTATCCTCCAAGCCCTCCTAAGCTTCCTTTTTTGGGTCATTTGCACCTCATTGGCTCTCTCCCCCATCGCTCTTTTTCTAAGCTTTCTAAAAAATATGGCCCCGTCATGCTCCTCAAACTCGGCTCCGTTCCAACCATCGTAATCTCTTCCGCCGCCGCTGCAAAAGAGGTGTTAAAAGTTCACGACCTAGCTTCTTGCAGCCGACCTCCCTCGGCCGCTTCTGGAAAATTTTCATACAACTATTTAGACATAGCCTTATCACCTTATGGAGATTATTGGAGGGAAGTTCGGAAGATTTGTGTGCTTGAACTCTTTAGTGCTCGTCGGGTGCAGTCGTTTCAGCCGATAAGAGAAGAAGAGATGAGCTTGTTGTTAAAGTCCATCTCGGAATCTTCATGTTCTGCCACGCTTGTTGACTTGAGTGAGAAATCGTATTCTCTTACTGCAAATATAATAACTCGAATTGCTTTTGGCAAGAGCTTTAGAGGCAGTGACTTAGATAATGAAAATTTTCAAAAGGTTATTCGTAGAGCAGTGGCAGCATTGGGAAGCTTTTCCTTTATTGACTTCTTTCCCAATGTGGGATGGATTATTGATCGAATAAGTGGTGTTCATATGAGATTGGAAAAAAGTTTTGAAGAGTTGGATGGGTTTTTCCAACAAGTAGTGGATGATCGCATTAAATTTGGAGATACTTCATTAAGTGATGATAAAGAAAACATAGTTGATGTTTTGTTGAAACTGGAAAGAGATCGCTCTGAGATTGATGCAGTAAAACTTACTAGAGATTCCATTAAAGCACTCATCATGGACATATTCTTAGCCGGGGTGGAAACAGCAGCAAACACCATTGTTTGGGCCATGACAGAACTGGTTAGGAACCCAAGGGTGATGAAGAAGGTTCAAGACGAGATCAGAAGTAGCATAAAAGAAGAACAAGCGAAAGAGACCGACCTCGAAAAGCTTCACTACCTAAAAATGGTAGTGAAAGAAGTTTTAAGGTTGCATACACCCGCCCCACTTCTAGTCCCAAGAGAAACCATGTCAAACTTTAAGCTCAATGGTTATGATGTTGATCCCAAAACTCATCTTCATGTTAATGTATGGGCGATCGGACGAGATCCAGAGTTGTGGCAAAATCCAGAAAAGTTCTTCCCGGAGAGATTTATTGAAAATAACATCGATTACAAAGGACAGAATTTTGAGTTCTTACCGTTTGGATCTGGTCGAAGAATCTGTCCCGGAATGAATATGGCAACCGTTACGGTCGAGTTAGCGCTGGCTAACTTGTTGTTGTGTTTTAATTGGAAATTACCAAATGGGATTAAAGAAGAAGATGTGGATATAAAAGAGGACGCTGGTCTTGCAATTGCCAAGAAGTCACCCTTGCAACTTGTTCCTGTCCCTTACTTCAATTCCAATTAA | 1539 | 40.94 | MFGLDQIMQSIFMSVLLILLPSLLIIWKKKVAIHNNKLYPPSPPKLPFLGHLHLIGSLPHRSFSKLSKKYGPVMLLKLGSVPTIVISSAAAAKEVLKVHDLASCSRPPSAASGKFSYNYLDIALSPYGDYWREVRKICVLELFSARRVQSFQPIREEEMSLLLKSISESSCSATLVDLSEKSYSLTANIITRIAFGKSFRGSDLDNENFQKVIRRAVAALGSFSFIDFFPNVGWIIDRISGVHMRLEKSFEELDGFFQQVVDDRIKFGDTSLSDDKENIVDVLLKLERDRSEIDAVKLTRDSIKALIMDIFLAGVETAANTIVWAMTELVRNPRVMKKVQDEIRSSIKEEQAKETDLEKLHYLKMVVKEVLRLHTPAPLLVPRETMSNFKLNGYDVDPKTHLHVNVWAIGRDPELWQNPEKFFPERFIENNIDYKGQNFEFLPFGSGRRICPGMNMATVTVELALANLLLCFNWKLPNGIKEEDVDIKEDAGLAIAKKSPLQLVPVPYFNSN | 512 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 4 | 4224020 | 4226241 | + | Sed0021646.1 | Sed04g0560 | 709163 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Sed04g0560 | 512 | ProSitePatterns | Cytochrome P450 cysteine heme-iron ligand signature. | 444 | 453 | IPR017972 | GO:0005506(InterPro)|GO:0016705(InterPro) | |
| Sed04g0560 | 512 | Gene3D | Cytochrome P450 | 25 | 504 | IPR036396 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed04g0560 | 512 | PRINTS | P450 superfamily signature | 451 | 462 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed04g0560 | 512 | PRINTS | P450 superfamily signature | 365 | 376 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed04g0560 | 512 | PRINTS | P450 superfamily signature | 313 | 330 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed04g0560 | 512 | PRINTS | P450 superfamily signature | 442 | 451 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed04g0560 | 512 | SUPERFAMILY | Cytochrome P450 | 40 | 507 | IPR036396 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed04g0560 | 512 | CDD | CYP71-like | 69 | 501 | - | - | |
| Sed04g0560 | 512 | PRINTS | E-class P450 group I signature | 405 | 429 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed04g0560 | 512 | PRINTS | E-class P450 group I signature | 322 | 348 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed04g0560 | 512 | PRINTS | E-class P450 group I signature | 302 | 319 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed04g0560 | 512 | PRINTS | E-class P450 group I signature | 364 | 382 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed04g0560 | 512 | PRINTS | E-class P450 group I signature | 185 | 203 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed04g0560 | 512 | PRINTS | E-class P450 group I signature | 441 | 451 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed04g0560 | 512 | PRINTS | E-class P450 group I signature | 67 | 86 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed04g0560 | 512 | PRINTS | E-class P450 group I signature | 91 | 112 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed04g0560 | 512 | PRINTS | E-class P450 group I signature | 451 | 474 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed04g0560 | 512 | PANTHER | CYTOCHROME P450 71B11-RELATED | 18 | 506 | IPR050193 | - | |
| Sed04g0560 | 512 | Pfam | Cytochrome P450 | 40 | 497 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed04g0560 | 512 | FunFam | Cytochrome P450 83B1 | 26 | 504 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Sed01g1607 | Sed-Chr1:11686609 | Sed04g0560 | Sed-Chr4:4224020 | 3.90E-121 | dispersed | |
| Sed04g0560 | Sed-Chr4:4224020 | Sed04g0564 | Sed-Chr4:4287024 | 2.00E-266 | dispersed | |
| Sed04g0559 | Sed-Chr4:4178928 | Sed04g0560 | Sed-Chr4:4224020 | 6.00E-146 | tandem |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Sed04g0560 | - | - | - | 0.0 |