Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Sed04g0562 | ATGTTTAGCCTCAATCAGATAATGCATATCATTTTCGCCTCAGTTCCACTAATCTTATTGTTAGTTTCTCTAATTCTTTTGAAATCGAAGAAGAAAGTTGCAACACAAAACAACAAGCTTTATCCTCCAAGCCCTCCTAAGCTTCCTTTTTTGGGTCATTTGCACCTCGTTGGCTCTCTCCCCCATCGCTCTCTTCGTAAGCTTTCTAAAAAATACGGCCCCGTCATGCTCCTCAAACTCGGCTCTGTCCCAACCGTTGTTATCTCCTCCGCTGCGACGGCGAAAGAGTTGTTCAAAGTTCACGACCTTGCTTCTTGCAGCCGACCTCCCTCAACCGCTGGCGAAAAATTTTCGTATAACTATCTAGACATAGGCTTAGCACCTTATGGTGACTATTGGAGGGAAGTTCGAAAGATTTGTGTTCTTGAGCTCTTCAGTGCAAGGCGGGTTCAGTCGTTTCAGCCGATTCGAGAAGAAGAGATTAGTTTGTTGTTAAAATCCATCTCTGAATCTTCATGTTCTCTCACTCTAGTTAATTTGAATGAGAAACTGTATTCTCTTACTGCAAACATAATAAGCCGAATTGCTTTCAGCAAGAGTTTTAGAGGGGGTGAGCTCGATAACGAAAATTTTCTAAGGCTCATTCGTAGGGTTGTGGCAGCAGTCGGGGGCTTTTCCGCGGTTGACTTCCTTCCCGGCGTTGGTTGGATGATTGATCGAATAAGTGGTGCTCATGGAAGGTTGGAGAAAAGCTTTGAAGAGTTTGATACATTTTTCCAACATTTAATTGAGGATCGCATCAAATATGGAGAGAATACTTCTTCCAATGATGAGGATCAAGAAAACATTCTTGATGTTTTATTAAAATTGGAAAGAGGTGGCTCTGAGTTTGATGCTGTCAAACTTAATCAAGATTGCATTAAGGCACTTCTTATGGATATATTTTTAGCTGGAATAGAAACTGGGGCAAACACCCTAGTTTGGGCAATGACAGAGCTGGTAAAGAATCCAAAAGTGATGAAGAAGTTACAAAATGAGATTAGAAGTTGCATCAAAGAAGAACGAGTAAAAGAGACCGATCTCGAGAAGCTTCCATACTTAAAGATGGCGATAAAAGAAGTTCTGAGATTACATACACCGGTTCCGCTTTTACTCCCGAGAGAAACCATGTCCCATTTCAAGCTGGATGGTTATGATATTGATCCCAAATCTCAACTCTATGTTAACGTATGGGCGATTGGACGAGATCCCGAGTTGTGGAAAAATCCAGAAGAGTTCTCGCCGGACAGATTTGCGGAAAGTAATGTCGATTACAAAGGTCAGAACTTTGAGTTATTGCCGTTCGGATCGGGTCGGAGAATATGTCCTGGAATGAATATGGCAACTGCTACTGTGGAGCAAACATTGGCTAATATGTTGCTGTGTTTTGATTGGAAACTACCAAATGGAATTAAAGAAGAAGATGTGGATATTGAAGAGGAAGCTGGTATTGCAGTTTCAAAGAAATCACCTCTTCAACTTGCTCCAGTCCCTTACTTCAGTTCCAAATAA | 1551 | 41.52 | MFSLNQIMHIIFASVPLILLLVSLILLKSKKKVATQNNKLYPPSPPKLPFLGHLHLVGSLPHRSLRKLSKKYGPVMLLKLGSVPTVVISSAATAKELFKVHDLASCSRPPSTAGEKFSYNYLDIGLAPYGDYWREVRKICVLELFSARRVQSFQPIREEEISLLLKSISESSCSLTLVNLNEKLYSLTANIISRIAFSKSFRGGELDNENFLRLIRRVVAAVGGFSAVDFLPGVGWMIDRISGAHGRLEKSFEEFDTFFQHLIEDRIKYGENTSSNDEDQENILDVLLKLERGGSEFDAVKLNQDCIKALLMDIFLAGIETGANTLVWAMTELVKNPKVMKKLQNEIRSCIKEERVKETDLEKLPYLKMAIKEVLRLHTPVPLLLPRETMSHFKLDGYDIDPKSQLYVNVWAIGRDPELWKNPEEFSPDRFAESNVDYKGQNFELLPFGSGRRICPGMNMATATVEQTLANMLLCFDWKLPNGIKEEDVDIEEEAGIAVSKKSPLQLAPVPYFSSK | 516 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 4 | 4246695 | 4248827 | + | Sed0014480.1 | Sed04g0562 | 709165 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Sed04g0562 | 516 | Gene3D | Cytochrome P450 | 26 | 508 | IPR036396 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed04g0562 | 516 | SUPERFAMILY | Cytochrome P450 | 42 | 510 | IPR036396 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed04g0562 | 516 | PANTHER | CYTOCHROME P450 71B11-RELATED | 20 | 510 | IPR050193 | - | |
| Sed04g0562 | 516 | ProSitePatterns | Cytochrome P450 cysteine heme-iron ligand signature. | 448 | 457 | IPR017972 | GO:0005506(InterPro)|GO:0016705(InterPro) | |
| Sed04g0562 | 516 | Pfam | Cytochrome P450 | 42 | 501 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed04g0562 | 516 | PRINTS | P450 superfamily signature | 455 | 466 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed04g0562 | 516 | PRINTS | P450 superfamily signature | 369 | 380 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed04g0562 | 516 | PRINTS | P450 superfamily signature | 446 | 455 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed04g0562 | 516 | PRINTS | P450 superfamily signature | 317 | 334 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed04g0562 | 516 | FunFam | Cytochrome P450 83B1 | 27 | 508 | - | - | |
| Sed04g0562 | 516 | CDD | CYP71-like | 71 | 505 | - | - | |
| Sed04g0562 | 516 | PRINTS | E-class P450 group I signature | 455 | 478 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed04g0562 | 516 | PRINTS | E-class P450 group I signature | 69 | 88 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed04g0562 | 516 | PRINTS | E-class P450 group I signature | 306 | 323 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed04g0562 | 516 | PRINTS | E-class P450 group I signature | 409 | 433 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed04g0562 | 516 | PRINTS | E-class P450 group I signature | 445 | 455 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed04g0562 | 516 | PRINTS | E-class P450 group I signature | 187 | 205 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed04g0562 | 516 | PRINTS | E-class P450 group I signature | 326 | 352 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed04g0562 | 516 | PRINTS | E-class P450 group I signature | 368 | 386 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Sed04g0559 | Sed-Chr4:4178928 | Sed04g0562 | Sed-Chr4:4246695 | 8.30E-140 | dispersed | |
| Sed04g0562 | Sed-Chr4:4246695 | Sed04g0570 | Sed-Chr4:4343711 | 9.10E-243 | dispersed | |
| Sed04g0566 | Sed-Chr4:4300434 | Sed04g0562 | Sed-Chr4:4246695 | 8.40E-73 | dispersed | |
| Sed04g0562 | Sed-Chr4:4246695 | Sed04g0563 | Sed-Chr4:4274632 | 4.50E-64 | tandem |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Sed04g0562 | - | - | - | 0.0 |