Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Sed04g0568 | ATGATTAGCCTTTCTCCAATGATCTTCTGGATTTCTCTAATCTCCCTGTTATCTTCTTTACTGCTTCTTAAAACAAAGATAAAGCCTTCAACACACAACAACAAGAAGCTCGTTCCTCCAGGCCCTCCAAAGCTTCCTCTGTTGGGTCATTTGCACCTCCTCGGCCCCCTCCCCTATCGCTCGTTACGGGAACTTTCAAAAAAACACGGCCCCGTCATGCTTCTCAAACTCGGTTCGGTCCCAACCGTCGTCATCTCCTCCGCTGCCGCTGCAAAAGAGTTGTTCAAACTCCACGATCTCGACTCTTGCAGTCGCCCTCGCTTGGTGGGCAGTAGAAGGTTTTCATATAACTTCGTTGACATGAATCTGTCTTCCTACGACGATCGTTGGAAGGAGCTTCGAAAGATTTTTACGCTCGAGCTGTTCAACATGAAGCGGGTGCAGTCGTCGAATCATATTAGAGAAGAGGAAGTGAGTCTGTTGATGAACTCCATCTCTCAATCTTCATGTTGTTCAACACCAATTAATCTAAGTGAGAAATTGTATTCTCTAACTGCAAATATAACCACTCGAGTTGCTTTTGGCAAGATGTTTAGAGGGGGAGGGCTAGATGAAAAGATTGAACACGTTATCCGTAGAGCATTAGCAGCACTCGGGATTTTCTCGATGAGCGACTACTTTCCAAGTTTCGGTTGGGTTATCGATCGATTCAACGGTGTTCATGCAAGGCTGGAGAAGAGCTTTGCTGAGTTAGATGCTTTTTTTCAAGAAGTAGTCGATTATCGCATCAGCCTCTTGGGAACTTCTGGAAAGGAAGAAAATATTGTTGATGTTTTGTTGAGAATGGGGAAAGACTGTTCTCAATTTGATACACTCATTTTTACCCAAGATTGCATTAAGGCAGTTATCATGGACATTTTTTTAGCTGGGGTGGAAACAGGAGCGACCATTACTACTTGGGCAATGACAGAGCTGATTAAGAACCCAAAAGTGATGAAGAAGCTTCAAGACGAGATCAGAAGTTGCGTAAAAGAAGAACAAGTGAAAGAGAGCGACCTCGAAAAACTTTCATATCTAAAAATGGTAGTAAAAGAGGTTTTACGGTTGCATCCACCCGCCCCGCTTCTTCTCCCAAGAGAAACCATGTCGCCTTTTAAACTCAACGGTTACGATATTGATTCGAAGACTCATCTTCACATCAACGTATGGGCGATTGGACGAGATCCAGATTCTTGGACTAATCCGGAGGAGTTCATTCCTGAGAGGTTTATGGAAAACAACATCGATTTTAAAGGACACGACTTCGAGTTTTTGCCATTCGGAGCTGGTCGTAGAATTTGTCCTGGAATGAATATGGGAAGTCTTACTGTGGAGTTAACATTGGCAAATCTGTTGTTGTGTTTTGATTGGAAATTACCAAATGGAATGAAAGAAGAAGATGTGGATGTAGAGGAAGATTTTGGTCTTACGGTTGCCAAGAAATCACTTCTTAAACTTGTTCCAATTCGTTACTTTAACTAG | 1521 | 42.87 | MISLSPMIFWISLISLLSSLLLLKTKIKPSTHNNKKLVPPGPPKLPLLGHLHLLGPLPYRSLRELSKKHGPVMLLKLGSVPTVVISSAAAAKELFKLHDLDSCSRPRLVGSRRFSYNFVDMNLSSYDDRWKELRKIFTLELFNMKRVQSSNHIREEEVSLLMNSISQSSCCSTPINLSEKLYSLTANITTRVAFGKMFRGGGLDEKIEHVIRRALAALGIFSMSDYFPSFGWVIDRFNGVHARLEKSFAELDAFFQEVVDYRISLLGTSGKEENIVDVLLRMGKDCSQFDTLIFTQDCIKAVIMDIFLAGVETGATITTWAMTELIKNPKVMKKLQDEIRSCVKEEQVKESDLEKLSYLKMVVKEVLRLHPPAPLLLPRETMSPFKLNGYDIDSKTHLHINVWAIGRDPDSWTNPEEFIPERFMENNIDFKGHDFEFLPFGAGRRICPGMNMGSLTVELTLANLLLCFDWKLPNGMKEEDVDVEEDFGLTVAKKSLLKLVPIRYFN | 506 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 4 | 4319134 | 4321399 | + | Sed0026897.1 | Sed04g0568 | 709171 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Sed04g0568 | 506 | SUPERFAMILY | Cytochrome P450 | 39 | 497 | IPR036396 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed04g0568 | 506 | ProSitePatterns | Cytochrome P450 cysteine heme-iron ligand signature. | 440 | 449 | IPR017972 | GO:0005506(InterPro)|GO:0016705(InterPro) | |
| Sed04g0568 | 506 | Pfam | Cytochrome P450 | 39 | 490 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed04g0568 | 506 | CDD | CYP71-like | 68 | 497 | - | - | |
| Sed04g0568 | 506 | PRINTS | P450 superfamily signature | 309 | 326 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed04g0568 | 506 | PRINTS | P450 superfamily signature | 438 | 447 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed04g0568 | 506 | PRINTS | P450 superfamily signature | 361 | 372 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed04g0568 | 506 | PANTHER | CYTOCHROME P450 71B11-RELATED | 18 | 502 | IPR050193 | - | |
| Sed04g0568 | 506 | PRINTS | E-class P450 group I signature | 318 | 344 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed04g0568 | 506 | PRINTS | E-class P450 group I signature | 184 | 202 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed04g0568 | 506 | PRINTS | E-class P450 group I signature | 66 | 85 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed04g0568 | 506 | PRINTS | E-class P450 group I signature | 360 | 378 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed04g0568 | 506 | PRINTS | E-class P450 group I signature | 401 | 425 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed04g0568 | 506 | PRINTS | E-class P450 group I signature | 447 | 470 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed04g0568 | 506 | PRINTS | E-class P450 group I signature | 298 | 315 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed04g0568 | 506 | PRINTS | E-class P450 group I signature | 437 | 447 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed04g0568 | 506 | FunFam | Cytochrome P450 83B1 | 25 | 500 | - | - | |
| Sed04g0568 | 506 | Gene3D | Cytochrome P450 | 24 | 502 | IPR036396 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Sed04g0563 | Sed-Chr4:4274632 | Sed04g0568 | Sed-Chr4:4319134 | 1.00E-113 | dispersed | |
| Sed04g0568 | Sed-Chr4:4319134 | Sed04g0573 | Sed-Chr4:4372009 | 6.10E-199 | dispersed | |
| Sed04g0566 | Sed-Chr4:4300434 | Sed04g0568 | Sed-Chr4:4319134 | 2.80E-52 | proximal | |
| Sed04g0567 | Sed-Chr4:4311867 | Sed04g0568 | Sed-Chr4:4319134 | 1.20E-111 | tandem | |
| Sed04g0568 | Sed-Chr4:4319134 | Sed04g0569 | Sed-Chr4:4331800 | 5.50E-184 | tandem |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Sed04g0568 | - | - | - | 0.0 |