Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed04g0569 ATGCAAAGCATTTTCACGTGGGTTCTTCTAATCTTGTTGTCTTCTTTACTTATAATATGGAAGAAGAAAGTTGCCATACACAACAACAAACTTTATCCTCCGGGCCCTCCTAAGCTTCCTCTTTTGGGTCATTTGCACCTCATTGGCTCTCTCCCCCATCGCTCTTTTTCTAAGCTTTCTAAAAAATATGGCCCCGTCATGCTCCTCAAACTCGGCTCCGTTCCAACCATCGTAATCTCTTCCGCCGCTGCTGCAAAAGAGGTGTTAAAAGTTCACGACCTAGCTTCTTGCAGCCGACCTCCCTCGGCCCCTTATCACCTTATGGAGATTATTGGAGGGAAGTTCGGAAGATTTGTGTGCTTGAACTCTTTAGTGCTCACAAAAGTGCAGTCGTTTCAGCCGATAAAAGAAGAAGAGATGAGCTTGTTGTTAAAGTCCATCTCGGAATCTTCATGTTCTGCCACGCTTGTTGACTTGAGTGAGAAATCGTATTCTCTTACTGCAAATATAATAACTCGAATTGCTTTTGGCAAGAGCTTTAGAGGCAGTGACTTAGATAATGAAAATTTTCAAAAGGTTATTCGTAGAGCAATGGCAGCATTGGGAAGCTTTTCCTTTATTGACTTCTTTCCCAATGTGGGTTGGATTATTGATCGAATAAGTGGTGTTCATATGAGATTGGAAAAAAGTTTTGAAGAGTTGGATGGGTTTTTCCAACAAGTAGTGGATGATCGCATTAAATTTGGAGATACTTCATTAAGTGATGATCAAGAAAACATAGTTGATATTTTGTTGAAACTGGAAAGAGATCGCTCTGAGATTGATGCAGTAAAATTTACTAGAGATTGCATTAAAGCACTCATCATGGACATATTCTTAGCCGGGGTGGAAACAACAGCAAACACCATTGTTTGGGCCATGACAGAACTGGTTAGGAACCCAAGGGTGATGAAGAAGGTTCAAGACGAGATCAGAAGTAGCATAAAAGAAGAACAAGCGAAAGAGACCGACCTCGAAAAGCTTCACTACCTAAAAATGGTAGTGAAAGAAGTCTTAAGGTTGCATACACCCGCCCCACTTCTAGTCCCAAGAGAAACCATGTCAAACTTTAAGCTCAATGGTTATGATGTTGATCCCAAAACTCATCTTCATGTTAATGTATGGGCGATCGGACGAGATCCAGAGTTGTGGCAAAATCCAGAAAAGTTCTTCCCAGAGAGATTTATTGAAAATAACATCGATTACAAAGGACAGAATTTTGAGTTCTTACCGTTCGGATCTGGTCGAAGAATCTGTCCCGGAATGAATATGGGAACCGTTACGGTCGAGTTAGCGCTGGCTAACTTGTTGTTGTGTTTTAATTGGAAATTACCAAATGGGATTAAAGAAGAAAATGTGGATATAAAAGAGGACGCTGGTCTTGCAATTGCCAAGAAGTCACCCTTACAACTTGTTCCTGTCCCTTACTTCAATTCCAATTAA 1482 40.89 MQSIFTWVLLILLSSLLIIWKKKVAIHNNKLYPPGPPKLPLLGHLHLIGSLPHRSFSKLSKKYGPVMLLKLGSVPTIVISSAAAAKEVLKVHDLASCSRPPSAPYHLMEIIGGKFGRFVCLNSLVLTKVQSFQPIKEEEMSLLLKSISESSCSATLVDLSEKSYSLTANIITRIAFGKSFRGSDLDNENFQKVIRRAMAALGSFSFIDFFPNVGWIIDRISGVHMRLEKSFEELDGFFQQVVDDRIKFGDTSLSDDQENIVDILLKLERDRSEIDAVKFTRDCIKALIMDIFLAGVETTANTIVWAMTELVRNPRVMKKVQDEIRSSIKEEQAKETDLEKLHYLKMVVKEVLRLHTPAPLLVPRETMSNFKLNGYDVDPKTHLHVNVWAIGRDPELWQNPEKFFPERFIENNIDYKGQNFEFLPFGSGRRICPGMNMGTVTVELALANLLLCFNWKLPNGIKEENVDIKEDAGLAIAKKSPLQLVPVPYFNSN 493
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 4331800 4334141 + Sed0013388.1 Sed04g0569 709172
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed04g0569 493 PRINTS P450 superfamily signature 423 432 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Sed04g0569 493 PRINTS P450 superfamily signature 294 311 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Sed04g0569 493 PRINTS P450 superfamily signature 346 357 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Sed04g0569 493 FunFam Cytochrome P450 83B1 19 485 - -
Sed04g0569 493 Pfam Cytochrome P450 33 478 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Sed04g0569 493 Gene3D Cytochrome P450 18 485 IPR036396 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Sed04g0569 493 CDD CYP71-like 62 482 - -
Sed04g0569 493 PANTHER CYTOCHROME P450 71B11-RELATED 8 487 IPR050193 -
Sed04g0569 493 SUPERFAMILY Cytochrome P450 33 488 IPR036396 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Sed04g0569 493 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 425 434 IPR017972 GO:0005506(InterPro)|GO:0016705(InterPro)
Sed04g0569 493 PRINTS E-class P450 group I signature 422 432 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Sed04g0569 493 PRINTS E-class P450 group I signature 60 79 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Sed04g0569 493 PRINTS E-class P450 group I signature 283 300 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Sed04g0569 493 PRINTS E-class P450 group I signature 345 363 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Sed04g0569 493 PRINTS E-class P450 group I signature 303 329 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Sed04g0569 493 PRINTS E-class P450 group I signature 84 105 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Sed04g0569 493 PRINTS E-class P450 group I signature 166 184 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Sed04g0569 493 PRINTS E-class P450 group I signature 386 410 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Sed04g0569 493 PRINTS E-class P450 group I signature 432 455 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed04g0564 Sed-Chr4:4287024 Sed04g0569 Sed-Chr4:4331800 2.80E-249 dispersed
Sed04g0569 Sed-Chr4:4331800 Sed04g0573 Sed-Chr4:4372009 3.60E-180 dispersed
Sed13g1868 Sed-Chr13:23704576 Sed04g0569 Sed-Chr4:4331800 4.70E-22 dispersed
Sed13g1869 Sed-Chr13:23704576 Sed04g0569 Sed-Chr4:4331800 1.80E-31 dispersed
Sed04g0568 Sed-Chr4:4319134 Sed04g0569 Sed-Chr4:4331800 5.50E-184 tandem
Sed04g0569 Sed-Chr4:4331800 Sed04g0570 Sed-Chr4:4343711 4.10E-168 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed04g0569 - - - 0.0