Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed04g0572 ATGACAGAGCTGATTAAGAACCCAAAAGTGATGAAGAAGCTTCAAGACGAGATCAGAAGTTGCGTAAAAGAAGAACAAGTGAAAGAGAGCGACCTCGAAAAACTTTCATATCTAAAAATGGTAGTAAAAGAGGTTTTACGGTTGCATCCACCCGCCCCGCTTCTTCTCCCAAGAGAAACCATGTCGCCTTTTAAACTCAACGGTTACGATATTGATTCGAAGACTCATCTTCACATCAACGTATGGGCGATTGGACGAGATCCAGATTCTTGGACTAATCCGGAGGAGTTCATTCCTGAGAGGTTTATGGAAAACAACATCGATTTTAAAGGACACGACTTCGAGTTTTTGCCATTCGGAGCTGGTCGTAGAATTTGTCCTGGAATGAATATGGGAAGTCTTACTGTGGAGTTAACATTGGCAAATCTGTTGTTGTGTTTTGATTGGAAATTACCAAATGGAATGAAAGAAGAAGATGTGGATGTAGAGGAAGATTTTGGTCTTACGGTTGCCAAGAAATCACTTCTTAAACTTGTTCCAATTCGTTACTTTAACTAG 558 40.32 MTELIKNPKVMKKLQDEIRSCVKEEQVKESDLEKLSYLKMVVKEVLRLHPPAPLLLPRETMSPFKLNGYDIDSKTHLHINVWAIGRDPDSWTNPEEFIPERFMENNIDFKGHDFEFLPFGAGRRICPGMNMGSLTVELTLANLLLCFDWKLPNGMKEEDVDVEEDFGLTVAKKSLLKLVPIRYFN 185
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 4363078 4365880 + Sed0002644.1 Sed04g0572 709175
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed04g0572 185 Gene3D Cytochrome P450 1 181 IPR036396 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Sed04g0572 185 PRINTS P450 superfamily signature 6 19 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Sed04g0572 185 PRINTS P450 superfamily signature 117 126 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Sed04g0572 185 PRINTS P450 superfamily signature 40 51 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Sed04g0572 185 PRINTS P450 superfamily signature 126 137 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Sed04g0572 185 Pfam Cytochrome P450 2 169 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Sed04g0572 185 SUPERFAMILY Cytochrome P450 1 176 IPR036396 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Sed04g0572 185 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 119 128 IPR017972 GO:0005506(InterPro)|GO:0016705(InterPro)
Sed04g0572 185 PANTHER CYTOCHROME P450 71B11-RELATED 1 181 IPR050193 -
Sed04g0572 185 PRINTS E-class P450 group I signature 126 149 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Sed04g0572 185 PRINTS E-class P450 group I signature 39 57 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Sed04g0572 185 PRINTS E-class P450 group I signature 116 126 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Sed04g0572 185 PRINTS E-class P450 group I signature 80 104 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Sed04g0572 185 FunFam Predicted protein 1 178 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed04g0572 Sed-Chr4:4363078 Sed06g1698 Sed-Chr6:41668565 1.10E-81 dispersed
Sed04g0572 Sed-Chr4:4363078 Sed04g0573 Sed-Chr4:4372009 2.60E-83 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed04g0572 - - - 0.0