Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed04g0578 ATGGAGTGCCATTACTCAATAATTGCTTTCACAACTTTCCTGACACTTTCAGTGCTCATTCCATGTTCTGTTCTGGCCCGAACGCCCTGCCATTTTCCGGCCGTTTTCAACTTCGGCGACTCCAATTCCGACACCGGCGGCCTCTCCGCCGTCTTCGGCCAGGCCCCTCCCCCCAATGGCATCTCTTTTTTCCGTACTCCCGCCGGCCGCTACTCCGATGGCCGCCTCATCGTCGATTTCATTGCCAAAAGCCTGGGATTGCCTTATCTGAGCGCGTATCTGGATGCGGTGGGAGCCAATTTCAGCCACGGCGCCAACTTCGCCACAGCGGGCTCCACCATCAGGCCACAAAACACAACTCTCCAGCAGAGTGGGTTCAGCCCCATTTCCTTGAACGTTCAGTACAATGAGTTCTACGAATTTCGTCGCAGATCTCAAACCGTTCGAAATCGATTTGGTGGTGTTTTTAAGCAATTGTTGCCTGAGGAAGAGAGTTTTGGTCGGGCGCTGTACACATTTGATATTGGTCAGAACGATTTGACCAGTGGTTACTTTGCCAACATGACCATCGACGAAGTTAGATTGTACATCCCTCAAGTATTGGACCAGTTCTCCCAGATTGTCAAGTGGGTGCACAGTCAAGGAGGGAGATATTTCTGGATCCACAACACAGGCCCAGTGGGCTGCCTTCCGTACGTATTGGACCGAAAGCCCGTTTCAGGTTCGGACTACGACCCGTACGGATGCGCCACTCCGTTCAATGAGTTGGCCCAATCCTTCAACCGCGGCCTCAAACAGGCCGTGGCTAAGCTTCGCGCCGCTCTGCCCGACTGCGCCATCACCTACGTCGACGTTTATTCCCTCAAATACGCTCTCATTGCCCAACACAAACAACACGGGTTTGAGTTTCCATTGAGAACATGTTGTGGACATGGTGGGAAATACAACTTCAATGTGAACCTTGGATGTGGAGGATCAAAGAAGATGAATGGAAAGGATGTATTGATTGGAAAGCCTTGCAAGAAGCCAGAACTATATGTGAATTGGGATGGTGTTCATTTCACACAAGCAGCTAACAAATGGATCTTCAACCAAATCAAAACTGGTGCTTACTCAGAACCCCCCATTCCTTTGAAGATGGCTTGCCACAAAGCTTAA 1158 50.52 MECHYSIIAFTTFLTLSVLIPCSVLARTPCHFPAVFNFGDSNSDTGGLSAVFGQAPPPNGISFFRTPAGRYSDGRLIVDFIAKSLGLPYLSAYLDAVGANFSHGANFATAGSTIRPQNTTLQQSGFSPISLNVQYNEFYEFRRRSQTVRNRFGGVFKQLLPEEESFGRALYTFDIGQNDLTSGYFANMTIDEVRLYIPQVLDQFSQIVKWVHSQGGRYFWIHNTGPVGCLPYVLDRKPVSGSDYDPYGCATPFNELAQSFNRGLKQAVAKLRAALPDCAITYVDVYSLKYALIAQHKQHGFEFPLRTCCGHGGKYNFNVNLGCGGSKKMNGKDVLIGKPCKKPELYVNWDGVHFTQAANKWIFNQIKTGAYSEPPIPLKMACHKA 385
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 4434804 4439248 + Sed0004242.1 Sed04g0578 709181

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed04g0578 385 PANTHER ZINC FINGER FYVE DOMAIN CONTAINING PROTEIN 22 365 - -
Sed04g0578 385 Pfam GDSL-like Lipase/Acylhydrolase 35 366 IPR001087 GO:0016788(InterPro)
Sed04g0578 385 CDD SGNH_plant_lipase_like 33 366 IPR035669 -
Sed04g0578 385 Gene3D SGNH hydrolase 23 369 IPR036514 -
Sed04g0578 385 SUPERFAMILY SGNH hydrolase 38 366 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed04g0578 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed04g0578 Sed-Chr4:4434804 Sed08g1419 Sed-Chr8:28809431 2.50E-96 dispersed
Sed04g0578 Sed-Chr4:4434804 Sed01g1586 Sed-Chr1:11520390 1.90E-43 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g632 . . . . . . . Bma15g00221 . Cmo18g00764 . Cma18g00759 . Car18g00692 Sed04g0578 Cpe09g00538 . Bhi07g01798 Tan04g0156 Cmetu10g1157 . Hepe10g1584 . . Cla05g02593 Cam05g2784 Cec05g2821 . Clacu05g2786 Cmu05g2634 Cre05g2750 . . . . Lsi04g00602 . . Cme10g00583 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004340 1 1 1 0 1 1 3 1 1 1 1 1 2 1 1 3 1 4 2 1 1 1 1 1 1 1 1 1 1 6 43