Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed04g0612 ATGAAGGGTAAGTTATTGATCAACTTTGCTCTAACAATATGCCTTTTCTATTGTAGCTTAGGAAGAGTGATTGAGTCACCACACTACAAAGTGATTCATTTGGAATCAGATTTTGAGATCAGACAGTACAAACAAGTCTCATGGATGTCTGCTCTTGTCCAAGGAACAGCCTCCTTTGAAAAGTCAACCCAACAAGGCTTCCACAGATTGTATCAATACATTCATGGTGCCAACAGCAACTCTTCTCACTTTCTAGTCACTTCTCCTGTCACAACTACCATTATGGCATCGACACGTGGACCCGACCGCTTGGTTAGGTGCTATCTGCCTGCAGTGTATACCGAAAACCCGCCGCTGCCCAATTCAGAACTGAGTGTCCAGTTTGAGAAGTGGGGAAGCAATTGCTTAGCAGTCAGGAGGTTTTCTGGTTTTGCTAAAGATGATAACATCAACAAAGAAATTGAAGCTCTAAAGAGCATCTTGAGCAAGTACCTACCTAGGAGTTTAGTCATTTCAGAATACACCATTGCTCAGTATAATTCGTCTCGCCATCTATCGGGGCGTTTGAACGAAGTCTGGCTTGATGTTTCTGCTTTTACTGCAGAAGAATGTCAACCCCTTTAA 624 42.79 MKGKLLINFALTICLFYCSLGRVIESPHYKVIHLESDFEIRQYKQVSWMSALVQGTASFEKSTQQGFHRLYQYIHGANSNSSHFLVTSPVTTTIMASTRGPDRLVRCYLPAVYTENPPLPNSELSVQFEKWGSNCLAVRRFSGFAKDDNINKEIEALKSILSKYLPRSLVISEYTIAQYNSSRHLSGRLNEVWLDVSAFTAEECQPL 207
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 4726725 4727824 + Sed0005640.1 Sed04g0612 709215

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed04g0612 207 Pfam SOUL heme-binding protein 24 194 IPR006917 -
Sed04g0612 207 SUPERFAMILY Probable bacterial effector-binding domain 15 196 IPR011256 -
Sed04g0612 207 Gene3D Regulatory factor, effector binding domain 23 204 IPR011256 -
Sed04g0612 207 PANTHER HEME-BINDING PROTEIN-RELATED 23 196 IPR006917 -
Sed04g0612 207 FunFam Heme-binding protein 2 24 203 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed04g0612 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g1635 Sed-Chr1:11891729 Sed04g0612 Sed-Chr4:4726725 3.90E-38 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g643 . . . . . . . . . Cmo18g00785 . Cma18g00781 . Car18g00711 Sed04g0612 Cpe09g00518 . Bhi07g01761 Tan04g1275 Cmetu10g0269 Lac13g0173 Hepe10g1613 . . Cla05g02569 Cam05g2754 Cec05g2787 Cco05g2826 Clacu05g2755 Cmu05g2606 Cre05g2721 . . . Cone12ag0661 Lsi04g00573 Csa05g02312 Chy10g00881 Cme10g00549 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013582 0 1 0 0 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 26