Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed04g0617 ATGGAGAAATTCGCATTTCCGGTGGACTCCGAGAACAAATCCACCAAATTCAACATCTTCTCCGTCGCGCCGCCGCACATGCGAACGTTCCACCTCTCCTGGATATCGTTCTGCGCCTGTTTCATTTCCAGCTTCGCGGCGGCGCCGCTCCTCCCCGTGATCCGGGACAACCTTAACTTGACCGACGCCGACATCGGCATCGCCTCCGTTTCCGGCGCCGTGTTCGCCCGAATCGCGATGGGCTCCGCCTGCGACATGGTGGGGCCGCGCCTGGCCTCCGCCTCCCTCATCTTGATAACCTCACCGGCCGTTTACCTGACCTCCATTGCCTCCTCCCCCGCCTCCTTCCTCGCCGCCCGTTTCTTCGCCGGCTTCTCGCTCGCCACCTTCGTCTCCGCCCAGTTCTGGATGAGCTCCATGTTCTCCTCCACCGTCGTCGGCACTGCCAACGGCGTCGCCGCCGGCTGGGGGAACCTCGGCGGCGGCGCGACCCAACTCATCATGCCTTATGTTTTCGCCGTCATTAAAAAGATCGGCGCCACGGATTTCACGGCGTGGAGGATCGCCTTCTTTGTCCCTGCGCTTTTTCAGACGCTCACCGCCTTCGCCGTCTTACTCTTCGGCCAAGACACACCCGATGGGAACTTCCGGCGGCTGCAGAACTCCGGCGAGAAAGCAAAAGATAAATTCTCGAAGGTAGTATACCATGGAGTGAGCAACTATAGAGGGTGGATTCTAGCATTGACGTACGGGTACTCATTCGGGGTGGAATTGACGATCGACAACGTGATTGCGAATTACTTTTACGATCGGTTCGATTTGAATCTGCACACGGCGGGGGTGGTGGCGGCGAGCTTCGGGCTGGCGAATCTGTTTTCTCGGCCGTACGGGGGGATATTGTCGGACGTAGTCAGTCGGAGATACGGGATGAGGGGGCGGCTGTGGGCGCTGTGGGTGGTGCAGACATTGGGCGGAGTTTTGTGTTTGGTTCTTGGAATGGTTGATTCGCTTAGTGCTTCCATTGGGATAATGCTCGTTTTTTCTCTGTTTGTTCAAGCCGCTTGTGGTCTTACTTTTGGCGTTGTTCCATTTGTCTCTCGGAGGTCGTTGGGAGTGATATCGGGGATGACGGGAGGGGGCGGGAACGTGGGGTCGGTGTTGACACAGCTGATATTCTTCCGAGGCACAAAGTACACAAAAGAGAGAGGGATAAGTCTAATGGGAGTGATGATCATAGGGTGCACTCTGCCTCTTTTGGTCATATATTTCCCACAATGGGGTGGCATGTTGTGTGGACCATCCTCCAAAGTGGCTTCTGAGGAAGACTATTACTTGTGGGAATGGAGCCCTGATGAGAGGGCCCAAGGGTTCCACTTGGCTAGCCTCAAGTTCGCTCATAACAGCCGCTCGGAAAGAGGAACCGCCCACAAGCCCACTTCTGATCATGATGCTCAGTCTGCCAATGTCTAG 1470 56.39 MEKFAFPVDSENKSTKFNIFSVAPPHMRTFHLSWISFCACFISSFAAAPLLPVIRDNLNLTDADIGIASVSGAVFARIAMGSACDMVGPRLASASLILITSPAVYLTSIASSPASFLAARFFAGFSLATFVSAQFWMSSMFSSTVVGTANGVAAGWGNLGGGATQLIMPYVFAVIKKIGATDFTAWRIAFFVPALFQTLTAFAVLLFGQDTPDGNFRRLQNSGEKAKDKFSKVVYHGVSNYRGWILALTYGYSFGVELTIDNVIANYFYDRFDLNLHTAGVVAASFGLANLFSRPYGGILSDVVSRRYGMRGRLWALWVVQTLGGVLCLVLGMVDSLSASIGIMLVFSLFVQAACGLTFGVVPFVSRRSLGVISGMTGGGGNVGSVLTQLIFFRGTKYTKERGISLMGVMIIGCTLPLLVIYFPQWGGMLCGPSSKVASEEDYYLWEWSPDERAQGFHLASLKFAHNSRSERGTAHKPTSDHDAQSANV 489
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 4772672 4778635 + Sed0026933.1 Sed04g0617 709220
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed04g0617 489 FunFam Nitrate transporter 2.1 227 428 - -
Sed04g0617 489 Pfam Major Facilitator Superfamily 34 387 IPR011701 GO:0022857(InterPro)|GO:0055085(InterPro)
Sed04g0617 489 PANTHER HIGH-AFFINITY NITRATE TRANSPORTER 2.3 2 473 IPR044772 GO:0005886(PANTHER)|GO:0015112(PANTHER)|GO:0015112(InterPro)|GO:0015706(PANTHER)|GO:0071249(PANTHER)
Sed04g0617 489 Gene3D MFS general substrate transporter like domains 225 427 IPR036259 -
Sed04g0617 489 CDD MFS_NRT2_like 30 417 IPR044772 GO:0015112(InterPro)
Sed04g0617 489 Gene3D MFS general substrate transporter like domains 25 216 IPR036259 -
Sed04g0617 489 MobiDBLite consensus disorder prediction 468 489 - -
Sed04g0617 489 FunFam High affinity nitrate transporter 2.5 22 215 - -
Sed04g0617 489 SUPERFAMILY MFS general substrate transporter 23 423 IPR036259 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g0961 Sed-Chr1:7123548 Sed04g0617 Sed-Chr4:4772672 2.80E-33 dispersed
Sed01g0962 Sed-Chr1:7143676 Sed04g0617 Sed-Chr4:4772672 1.60E-170 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed04g0617 K02575 - csv:101212365 774.622