Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed04g0619 ATGGAAGAAATGTACGGCTTGCAACCGACGGCGGAGTTGATGTCGCCGGAGAATCTGATTCTGCCGCCGGACTATCCGAGCCTTCTGGTGACCTGCGATCGGATTCCGGTGTTTGGATCCAACGAACTGCTTTCCGCGGCGGCGTCGGCGATATCGGAAGCCGGAGTTCAACGTGAAGAGGATACGGTGAGCGTGATCAAAGCCAAGATTTCTGCTCATCCTACTTATCCTCGTTTGCTCCACGCCTATATTGACTGCCAAAAGGTTGGAGCGCCACCGGAGATTGCGGATTTGTTGGACAAAATCCGGCGAGAAAGCGACGTTTGTAACCGTCACGCGCTCTCCACGTGCTTAGGCGTCGATCCTGATCTTGATGAATTCATGGAAATGTATTGCGATATTTTGGTGAAGTACAAATCGGATCTCAAAAGGCCTTTCGACGAAGCAACCATGTTCTTGAATAAGATCGAACTGCAACTTAGTAGCCTCTGCAATGGCGTGTTCTCCAGAAGCGTTTCCGATGAAGGAGCTGCCTCGTCGGATGAGGAGTTGAGTGGAGGAGAGATGGCATTTGTGGAGGCGGAGGCTCAAACCAAAGGCGAGAATAGAGATCTTAAGGACAGACTTTTACGTAAATTTGGGAGCCATATTAGTACCTTGAAATTAGAGTTCTCAAAGAAGAAGAAAAAAGGAAAATTACCAAAAGAAGCCAGGCAAACCCTCCTTCAATGGTGGAATCTTCACTGTAAATGGCCATATCCCACGGAAGCAGATAAGGTTGCACTGGCAGAGAGAACAGGGCTCGACCAGAAACAAATTAACAATTGGTTCATAAATCAGAGGAAACGGCACTGGAAGCCATCAGAGAATATGCAGTTTGAAGGAATGGATGGACTTTCTTCTGCTAGATTCTTCAGAGACGACTGA 927 48.0 MEEMYGLQPTAELMSPENLILPPDYPSLLVTCDRIPVFGSNELLSAAASAISEAGVQREEDTVSVIKAKISAHPTYPRLLHAYIDCQKVGAPPEIADLLDKIRRESDVCNRHALSTCLGVDPDLDEFMEMYCDILVKYKSDLKRPFDEATMFLNKIELQLSSLCNGVFSRSVSDEGAASSDEELSGGEMAFVEAEAQTKGENRDLKDRLLRKFGSHISTLKLEFSKKKKKGKLPKEARQTLLQWWNLHCKWPYPTEADKVALAERTGLDQKQINNWFINQRKRHWKPSENMQFEGMDGLSSARFFRDD 308
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 4788300 4799014 - Sed0023815.1 Sed04g0619 709222
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed04g0619 308 ProSitePatterns 'Homeobox' domain signature. 262 285 IPR017970 GO:0000981(InterPro)|GO:0006355(InterPro)
Sed04g0619 308 Pfam KNOX2 domain 118 164 IPR005541 GO:0003677(InterPro)|GO:0005634(InterPro)
Sed04g0619 308 ProSiteProfiles ELK domain profile. 204 224 IPR005539 GO:0003677(InterPro)
Sed04g0619 308 Gene3D - 223 296 - -
Sed04g0619 308 SMART KNOX1_2 64 108 IPR005540 GO:0003677(InterPro)|GO:0005634(InterPro)
Sed04g0619 308 CDD homeodomain 236 288 IPR001356 GO:0003677(InterPro)
Sed04g0619 308 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 83 296 IPR050224 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Sed04g0619 308 SMART HOX_1 226 291 IPR001356 GO:0003677(InterPro)
Sed04g0619 308 SMART ELK_2 204 225 IPR005539 GO:0003677(InterPro)
Sed04g0619 308 Pfam KNOX1 domain 66 107 IPR005540 GO:0003677(InterPro)|GO:0005634(InterPro)
Sed04g0619 308 Pfam ELK domain 204 225 IPR005539 GO:0003677(InterPro)
Sed04g0619 308 Pfam Homeobox KN domain 244 283 IPR008422 GO:0003677(InterPro)|GO:0006355(InterPro)
Sed04g0619 308 SUPERFAMILY Homeodomain-like 225 299 IPR009057 -
Sed04g0619 308 SMART KNOX2_2 114 165 IPR005541 GO:0003677(InterPro)|GO:0005634(InterPro)
Sed04g0619 308 ProSiteProfiles 'Homeobox' domain profile. 224 287 IPR001356 GO:0003677(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed04g0619 Sed-Chr4:4788300 Sed13g1842 Sed-Chr13:23357092 7.00E-73 dispersed
Sed04g0619 Sed-Chr4:4788300 Sed06g1657 Sed-Chr6:41329472 4.90E-151 wgd
Sed04g0619 Sed-Chr4:4788300 Sed08g0113 Sed-Chr8:674054 6.70E-84 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
38050 PF03791 KNOX2 4.40E-23 No_clan Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed04g0619 - - - 0.0