Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed04g0622 ATGAACCATCTCTTTGAACTGCCTGAACAGATTTGCTATGTGCAATGTGGAGTTTGCACCACTATTTTGTTGGTCAGTGTGCCGTTCAGCAGCTTGTCGATGGCGGTGATGGTGACGTGCGGACACTGCTCGAGCCTCCTTTCTGTCAACATGATGAAAGCCACTCTGGTTCCTCTCCATTTTCTGTCTTCTCTTTATCACAATGTGCCCAAAGAAGATTGTGGAGATATGAATTCAGGGAATTTCTTTGAGAGTGTCAAGAGATCATCAAACTTGAAGTTTTCTGAGTATGAGATTGAAGAAGGATTGATTCCTGTGACACCTCCTGTTATAAACAAACCTCCTCAGAAAAGACAGCGTGCCCCATCAGTTTACAACTGTTTCATCAAGGATGAAATCAGAAGGCTCAAAGCTCAAAATCCTCAAATGACTCACAAGGAGGCCTTCAGAACAGCCGCAAAAAATTGGGCAAATTTCCCTCCAATCCAAGAAAGAGAAGGCACAGAAAGCTGTAATCAGATTGAGGAAACTGGAATTTGGAACCCTCAAACTCCCGAGGTTCACAAAGATGGAAAGTGTTACCCAAGGCATTCAGTTTTGACATAA 606 43.23 MNHLFELPEQICYVQCGVCTTILLVSVPFSSLSMAVMVTCGHCSSLLSVNMMKATLVPLHFLSSLYHNVPKEDCGDMNSGNFFESVKRSSNLKFSEYEIEEGLIPVTPPVINKPPQKRQRAPSVYNCFIKDEIRRLKAQNPQMTHKEAFRTAAKNWANFPPIQEREGTESCNQIEETGIWNPQTPEVHKDGKCYPRHSVLT 201
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 4824311 4826407 + Sed0013376.1 Sed04g0622 709225

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed04g0622 201 PANTHER PROTEIN YABBY 6-RELATED 8 172 IPR006780 GO:0005634(PANTHER)|GO:0007275(InterPro)|GO:0009944(PANTHER)|GO:0045165(PANTHER)|GO:0048481(PANTHER)
Sed04g0622 201 Pfam YABBY protein 8 163 IPR006780 GO:0007275(InterPro)
Sed04g0622 201 CDD HMG-box_SF 120 166 - -
Sed04g0622 201 Gene3D High mobility group box domain 111 173 IPR036910 -
Sed04g0622 201 SUPERFAMILY HMG-box 105 161 IPR036910 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed04g0622 K25796 - - csv:101211641 328.946
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed04g0622 Sed-Chr4:4824311 Sed05g0986 Sed-Chr5:8360224 1.50E-31 dispersed
Sed03g2674 Sed-Chr3:42997721 Sed04g0622 Sed-Chr4:4824311 1.30E-27 wgd
Sed04g0622 Sed-Chr4:4824311 Sed06g1650 Sed-Chr6:41269917 4.00E-29 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Sed07g2037 . 1 182 C2C2-YABBY Transcription Factor Family AT1G69180 51.4 2.4e-44 176.4
Sed01g4021 . 62 220 C2C2-YABBY Transcription Factor Family AT2G45190 59.1 1.2e-42 170.6
Sed01g4022 . 1 159 C2C2-YABBY Transcription Factor Family AT2G45190 59.1 1.2e-42 170.6
Sed05g0986 . 69 234 C2C2-YABBY Transcription Factor Family AT2G45190 57.2 2.9e-41 166.0
Sed01g3224 . 1 169 C2C2-YABBY Transcription Factor Family AT1G08465 68.8 2.1e-56 216.5
Sed01g4021 . 18 210 C2C2-YABBY Transcription Factor Family AT1G08465 52.8 9.1e-44 174.5
Sed12g2369 . 5 176 C2C2-YABBY Transcription Factor Family AT1G08465 54.2 2.0e-43 173.3
Sed08g0677 . 6 179 C2C2-YABBY Transcription Factor Family AT1G08465 54.5 2.9e-42 169.5
Sed05g0986 . 25 224 C2C2-YABBY Transcription Factor Family AT1G08465 50.5 5.0e-42 168.7
Sed08g0678 . 6 164 C2C2-YABBY Transcription Factor Family AT1G08465 54.9 1.1e-41 167.5
Sed11g0122 . 5 179 C2C2-YABBY Transcription Factor Family AT1G08465 50.3 2.5e-41 166.4
Sed11g0124 . 5 179 C2C2-YABBY Transcription Factor Family AT1G08465 50.3 2.5e-41 166.4
Sed10g1447 . 8 177 C2C2-YABBY Transcription Factor Family AT1G08465 53.7 3.2e-41 166.0
Sed01g4021 . 29 219 C2C2-YABBY Transcription Factor Family AT4G00180 56.9 6.7e-51 198.4
Sed05g0986 . 36 233 C2C2-YABBY Transcription Factor Family AT4G00180 53.7 5.3e-48 188.7
Sed01g4022 . 1 158 C2C2-YABBY Transcription Factor Family AT4G00180 54.7 1.4e-37 154.1
Sed04g0622 . 1 171 C2C2-YABBY Transcription Factor Family AT1G23420 51.4 1.3e-40 164.5
Sed08g0677 . 8 175 C2C2-YABBY Transcription Factor Family AT2G26580 71.4 3.9e-62 235.3
Sed08g0678 . 8 160 C2C2-YABBY Transcription Factor Family AT2G26580 74.8 8.7e-62 234.2
Sed12g2369 . 7 169 C2C2-YABBY Transcription Factor Family AT2G26580 73.0 1.1e-61 233.8
Sed11g0122 . 9 170 C2C2-YABBY Transcription Factor Family AT2G26580 72.2 3.3e-61 232.3
Sed11g0124 . 9 170 C2C2-YABBY Transcription Factor Family AT2G26580 72.2 3.3e-61 232.3
Sed10g1447 . 10 168 C2C2-YABBY Transcription Factor Family AT2G26580 73.8 1.3e-60 230.3
Sed11g0123 . 4 147 C2C2-YABBY Transcription Factor Family AT2G26580 70.8 4.0e-51 198.7
Sed01g3224 . 1 169 C2C2-YABBY Transcription Factor Family AT2G26580 60.9 3.2e-48 189.1
Sed01g4021 . 20 182 C2C2-YABBY Transcription Factor Family AT2G26580 55.0 1.1e-43 174.1
Sed05g0986 . 25 197 C2C2-YABBY Transcription Factor Family AT2G26580 54.3 1.4e-43 173.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012058 0 3 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 2 1 1 30
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
38051 PF04690 YABBY 4.30E-55 CL0114 Sed TF