Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed04g0628 ATGTCTTCTTCGAATACGTCTTCGCCTTCGGTTTCGGATTCAAGTTTGCCGCCTCGAGCTTCGGATTCTTCTCCTCCTCCTCCTCCTTCGCCACCTTCGCCGGATCCTGATGGTCTTACATCCTTGATTTTGGGCGCTGCCAACGGCCCCCAACCGTCGGAGTTCGCATCGCAAGTCGAGGTTCCCCCGGCCGACGTCGCTCAAGGTTCGCCGCCCTCTTCTTCGCCGCCGCTTACCCCAAACCTTGGATCTACATCGACATCTCCGCCTCCGACTGGCTCCTCTGCTTCTACTTCGTCTAAACCAAATCCATCATCTCCACCGCCTCCGCCGCCGTCTCCGGTAGCTTCAGCTTCGCCACCGCCGTCTCCTCCGACGCCGGCTCAATCGCTACCGTCTTCCCCGCCGCCTCCCGAACTTCTACCTGAGGCTGCCGTTGTCCATCCTCCACCTTCCTCTGTTCCGACCAAGATCCCTCCGGTACCTCCAGGTAGTCCTCCTTCTCCAGTACCTGAAAATAAACCGACGAATCCGCTATCTCCACCGAATAATGGCGGAGCTCCCAGTACTAATACAGGGAAGGAGCTTCCACCGTCTACGCCGACGAGCCCGCTTACCCCAACCGAAAATCCATCGGTAATTCCTCCGCCCGGTGCGATTCCGGCGACGGAGAGTCGTACTCCGAGTCCTCCTCAAGGAATAACTACTCCAACATCAGAGTCTAACATCCTTCCACCTCCCACAACCACAACCACAACAACAGCAACATCCCCTCCTTCTCGAAATAACTCGCCTCAATCCACAGACTCAACGCAAGTGAAATCGCCATCAGGGAAGTCCAATGCGCCGCCGTCAGGTTCAAGTAGTGGTGCAGATGTTGTAGTAGGCGCAGCAGTGGCCGGAGTTCTTGCAATTGCTTTGATTGCGGTGTTGTTTGTGTTCACAAGGAGGAAGAAAAGACGGGGAGATTCGTACACTGCTCCTCATGATAACTTATATGTGAAATCAGGTGGAAATAACTATCGGCATCAACATATGGCCAATTCTGGTTCACCAAAAAGCTTATATACTCCGGTCCCGCATACTCCTAATGGAAATAGCTATGGGAGTCCAAAGGGAACAGGAAACAGTTGGAGTGGAATGGAGTCAGGTGGGATAAACAGGGCCAAGTTCTTATTTAGCTATGAGGAATTGATGGAAGTTACGTCCGGATTTTCGCGGAAAAACATTCTCGGGGAAGGTGGGTTTGGATGTGTTTACAAGGGTTGCCTTCCAGACGGGAAGCCAGTGGCCGTGAAGCAACTCAAGGCAGGAAGTGGACAAGGGGAGAGGGAATTCAAGGCGGAAGTCGAGATTATCAGTCGTGTTCATCATCGACATTTGGTGTCTTTAGTTGGCTACTGCGTCTCTGAGAATCATAGATTGCTCATCTATGAGTTTGTTCCTAATAAAACTCTTGAGTATCATCTCCACAGCGGTAATGAAGTGCCTGTGTTAGATTGGTCGAAAAGACTCAAAATCGCTTTAGGATCAGCAAAGGGTTTGGCATATCTGCATGAAGATTGCCATCCCAAAATTATTCATAGAGACATCAAGTCAGCCAACATTTTGCTGGATGATGCTTTTGAGGCGCAGGTTGCAGATTTTGGACTAGCGAAACTGACAAATGACACACACACCCACGTTTCGACTCGTGTCATGGGGACATTTGGATACATGGCGCCCGAGTATGCATCCAGTGGAAAATTGACAGACAGATCAGATGTTTTCTCGTTTGGGGTTGTGCTTCTTGAGCTTATTACTGGTCGTAAGTCTGTTGATCCTACTCAGCCTTTGGGAGATGAGAGTTTGGTAGAATGGGCTCGTCCACTCCTCCTTCGTGCCCTTGAAACTGGGGAGTTTGACGGATTAATAGATCCACGCCTTGGAAAGCGTTATGTGGAAAGTGAAATGTTTGGAATGATCGAAGCAGCAGCTGCCTGCATTCGCCATTCCGCTCCCAGAAGGCCTCGCATGGTTCAGGTGGTGAGAGCACTAGACATTGAAAGTGACATGTCGGACCTCACAAATGGTGTCAAATATGGCCAGAGCACCACTTATGATTCTGGACAATATAATGAAGACATCTCTAAATTCAGGAGAACGGCACTCGATGATAGCTCGGAATTCGGTATCTACAGTAGCGAATACAATTCCAGAGAAACGACTGCAAGTCGTGAATCATGGAGGTCTGAAAATAACTTAAGTGGCGAATCCGAAACTCAAGCTTTTAAAGGACGAAATGGCATACCACGCAGTCACCAGTAG 2307 50.07 MSSSNTSSPSVSDSSLPPRASDSSPPPPPSPPSPDPDGLTSLILGAANGPQPSEFASQVEVPPADVAQGSPPSSSPPLTPNLGSTSTSPPPTGSSASTSSKPNPSSPPPPPPSPVASASPPPSPPTPAQSLPSSPPPPELLPEAAVVHPPPSSVPTKIPPVPPGSPPSPVPENKPTNPLSPPNNGGAPSTNTGKELPPSTPTSPLTPTENPSVIPPPGAIPATESRTPSPPQGITTPTSESNILPPPTTTTTTTATSPPSRNNSPQSTDSTQVKSPSGKSNAPPSGSSSGADVVVGAAVAGVLAIALIAVLFVFTRRKKRRGDSYTAPHDNLYVKSGGNNYRHQHMANSGSPKSLYTPVPHTPNGNSYGSPKGTGNSWSGMESGGINRAKFLFSYEELMEVTSGFSRKNILGEGGFGCVYKGCLPDGKPVAVKQLKAGSGQGEREFKAEVEIISRVHHRHLVSLVGYCVSENHRLLIYEFVPNKTLEYHLHSGNEVPVLDWSKRLKIALGSAKGLAYLHEDCHPKIIHRDIKSANILLDDAFEAQVADFGLAKLTNDTHTHVSTRVMGTFGYMAPEYASSGKLTDRSDVFSFGVVLLELITGRKSVDPTQPLGDESLVEWARPLLLRALETGEFDGLIDPRLGKRYVESEMFGMIEAAAACIRHSAPRRPRMVQVVRALDIESDMSDLTNGVKYGQSTTYDSGQYNEDISKFRRTALDDSSEFGIYSSEYNSRETTASRESWRSENNLSGESETQAFKGRNGIPRSHQ 768
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 4847736 4851484 - Sed0007228.1 Sed04g0628 709231
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed04g0628 768 ProSiteProfiles Protein kinase domain profile. 405 685 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed04g0628 768 MobiDBLite consensus disorder prediction 1 290 - -
Sed04g0628 768 MobiDBLite consensus disorder prediction 1 19 - -
Sed04g0628 768 MobiDBLite consensus disorder prediction 79 101 - -
Sed04g0628 768 MobiDBLite consensus disorder prediction 728 761 - -
Sed04g0628 768 MobiDBLite consensus disorder prediction 102 182 - -
Sed04g0628 768 Pfam Protein tyrosine and serine/threonine kinase 408 605 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed04g0628 768 ProSitePatterns Serine/Threonine protein kinases active-site signature. 526 538 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed04g0628 768 MobiDBLite consensus disorder prediction 200 224 - -
Sed04g0628 768 FunFam proline-rich receptor-like protein kinase PERK8 481 694 - -
Sed04g0628 768 FunFam Proline-rich receptor-like protein kinase PERK8 377 480 - -
Sed04g0628 768 ProSitePatterns Protein kinases ATP-binding region signature. 411 433 IPR017441 GO:0005524(InterPro)
Sed04g0628 768 SMART serkin_6 405 679 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed04g0628 768 SUPERFAMILY Protein kinase-like (PK-like) 385 679 IPR011009 -
Sed04g0628 768 MobiDBLite consensus disorder prediction 225 288 - -
Sed04g0628 768 Gene3D Phosphorylase Kinase; domain 1 377 480 - -
Sed04g0628 768 CDD STKc_IRAK 411 680 - -
Sed04g0628 768 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 254 715 IPR047117 -
Sed04g0628 768 MobiDBLite consensus disorder prediction 728 768 - -
Sed04g0628 768 Gene3D Transferase(Phosphotransferase) domain 1 481 696 - -
Sed04g0628 768 MobiDBLite consensus disorder prediction 20 36 - -
Sed04g0628 768 MobiDBLite consensus disorder prediction 183 199 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed04g0628 Sed-Chr4:4847736 Sed11g2081 Sed-Chr11:34752321 9.70E-140 dispersed
Sed04g0628 Sed-Chr4:4847736 Sed06g1639 Sed-Chr6:41169743 2.90E-229 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
78963 PF07714 PK_Tyr_Ser-Thr 3.60E-43 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed04g0628 - - - 0.0