Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed04g0628 | ATGTCTTCTTCGAATACGTCTTCGCCTTCGGTTTCGGATTCAAGTTTGCCGCCTCGAGCTTCGGATTCTTCTCCTCCTCCTCCTCCTTCGCCACCTTCGCCGGATCCTGATGGTCTTACATCCTTGATTTTGGGCGCTGCCAACGGCCCCCAACCGTCGGAGTTCGCATCGCAAGTCGAGGTTCCCCCGGCCGACGTCGCTCAAGGTTCGCCGCCCTCTTCTTCGCCGCCGCTTACCCCAAACCTTGGATCTACATCGACATCTCCGCCTCCGACTGGCTCCTCTGCTTCTACTTCGTCTAAACCAAATCCATCATCTCCACCGCCTCCGCCGCCGTCTCCGGTAGCTTCAGCTTCGCCACCGCCGTCTCCTCCGACGCCGGCTCAATCGCTACCGTCTTCCCCGCCGCCTCCCGAACTTCTACCTGAGGCTGCCGTTGTCCATCCTCCACCTTCCTCTGTTCCGACCAAGATCCCTCCGGTACCTCCAGGTAGTCCTCCTTCTCCAGTACCTGAAAATAAACCGACGAATCCGCTATCTCCACCGAATAATGGCGGAGCTCCCAGTACTAATACAGGGAAGGAGCTTCCACCGTCTACGCCGACGAGCCCGCTTACCCCAACCGAAAATCCATCGGTAATTCCTCCGCCCGGTGCGATTCCGGCGACGGAGAGTCGTACTCCGAGTCCTCCTCAAGGAATAACTACTCCAACATCAGAGTCTAACATCCTTCCACCTCCCACAACCACAACCACAACAACAGCAACATCCCCTCCTTCTCGAAATAACTCGCCTCAATCCACAGACTCAACGCAAGTGAAATCGCCATCAGGGAAGTCCAATGCGCCGCCGTCAGGTTCAAGTAGTGGTGCAGATGTTGTAGTAGGCGCAGCAGTGGCCGGAGTTCTTGCAATTGCTTTGATTGCGGTGTTGTTTGTGTTCACAAGGAGGAAGAAAAGACGGGGAGATTCGTACACTGCTCCTCATGATAACTTATATGTGAAATCAGGTGGAAATAACTATCGGCATCAACATATGGCCAATTCTGGTTCACCAAAAAGCTTATATACTCCGGTCCCGCATACTCCTAATGGAAATAGCTATGGGAGTCCAAAGGGAACAGGAAACAGTTGGAGTGGAATGGAGTCAGGTGGGATAAACAGGGCCAAGTTCTTATTTAGCTATGAGGAATTGATGGAAGTTACGTCCGGATTTTCGCGGAAAAACATTCTCGGGGAAGGTGGGTTTGGATGTGTTTACAAGGGTTGCCTTCCAGACGGGAAGCCAGTGGCCGTGAAGCAACTCAAGGCAGGAAGTGGACAAGGGGAGAGGGAATTCAAGGCGGAAGTCGAGATTATCAGTCGTGTTCATCATCGACATTTGGTGTCTTTAGTTGGCTACTGCGTCTCTGAGAATCATAGATTGCTCATCTATGAGTTTGTTCCTAATAAAACTCTTGAGTATCATCTCCACAGCGGTAATGAAGTGCCTGTGTTAGATTGGTCGAAAAGACTCAAAATCGCTTTAGGATCAGCAAAGGGTTTGGCATATCTGCATGAAGATTGCCATCCCAAAATTATTCATAGAGACATCAAGTCAGCCAACATTTTGCTGGATGATGCTTTTGAGGCGCAGGTTGCAGATTTTGGACTAGCGAAACTGACAAATGACACACACACCCACGTTTCGACTCGTGTCATGGGGACATTTGGATACATGGCGCCCGAGTATGCATCCAGTGGAAAATTGACAGACAGATCAGATGTTTTCTCGTTTGGGGTTGTGCTTCTTGAGCTTATTACTGGTCGTAAGTCTGTTGATCCTACTCAGCCTTTGGGAGATGAGAGTTTGGTAGAATGGGCTCGTCCACTCCTCCTTCGTGCCCTTGAAACTGGGGAGTTTGACGGATTAATAGATCCACGCCTTGGAAAGCGTTATGTGGAAAGTGAAATGTTTGGAATGATCGAAGCAGCAGCTGCCTGCATTCGCCATTCCGCTCCCAGAAGGCCTCGCATGGTTCAGGTGGTGAGAGCACTAGACATTGAAAGTGACATGTCGGACCTCACAAATGGTGTCAAATATGGCCAGAGCACCACTTATGATTCTGGACAATATAATGAAGACATCTCTAAATTCAGGAGAACGGCACTCGATGATAGCTCGGAATTCGGTATCTACAGTAGCGAATACAATTCCAGAGAAACGACTGCAAGTCGTGAATCATGGAGGTCTGAAAATAACTTAAGTGGCGAATCCGAAACTCAAGCTTTTAAAGGACGAAATGGCATACCACGCAGTCACCAGTAG | 2307 | 50.07 | MSSSNTSSPSVSDSSLPPRASDSSPPPPPSPPSPDPDGLTSLILGAANGPQPSEFASQVEVPPADVAQGSPPSSSPPLTPNLGSTSTSPPPTGSSASTSSKPNPSSPPPPPPSPVASASPPPSPPTPAQSLPSSPPPPELLPEAAVVHPPPSSVPTKIPPVPPGSPPSPVPENKPTNPLSPPNNGGAPSTNTGKELPPSTPTSPLTPTENPSVIPPPGAIPATESRTPSPPQGITTPTSESNILPPPTTTTTTTATSPPSRNNSPQSTDSTQVKSPSGKSNAPPSGSSSGADVVVGAAVAGVLAIALIAVLFVFTRRKKRRGDSYTAPHDNLYVKSGGNNYRHQHMANSGSPKSLYTPVPHTPNGNSYGSPKGTGNSWSGMESGGINRAKFLFSYEELMEVTSGFSRKNILGEGGFGCVYKGCLPDGKPVAVKQLKAGSGQGEREFKAEVEIISRVHHRHLVSLVGYCVSENHRLLIYEFVPNKTLEYHLHSGNEVPVLDWSKRLKIALGSAKGLAYLHEDCHPKIIHRDIKSANILLDDAFEAQVADFGLAKLTNDTHTHVSTRVMGTFGYMAPEYASSGKLTDRSDVFSFGVVLLELITGRKSVDPTQPLGDESLVEWARPLLLRALETGEFDGLIDPRLGKRYVESEMFGMIEAAAACIRHSAPRRPRMVQVVRALDIESDMSDLTNGVKYGQSTTYDSGQYNEDISKFRRTALDDSSEFGIYSSEYNSRETTASRESWRSENNLSGESETQAFKGRNGIPRSHQ | 768 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 4847736 | 4851484 | - | Sed0007228.1 | Sed04g0628 | 709231 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed04g0628 | 768 | ProSiteProfiles | Protein kinase domain profile. | 405 | 685 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Sed04g0628 | 768 | MobiDBLite | consensus disorder prediction | 1 | 290 | - | - | |
Sed04g0628 | 768 | MobiDBLite | consensus disorder prediction | 1 | 19 | - | - | |
Sed04g0628 | 768 | MobiDBLite | consensus disorder prediction | 79 | 101 | - | - | |
Sed04g0628 | 768 | MobiDBLite | consensus disorder prediction | 728 | 761 | - | - | |
Sed04g0628 | 768 | MobiDBLite | consensus disorder prediction | 102 | 182 | - | - | |
Sed04g0628 | 768 | Pfam | Protein tyrosine and serine/threonine kinase | 408 | 605 | IPR001245 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Sed04g0628 | 768 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 526 | 538 | IPR008271 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Sed04g0628 | 768 | MobiDBLite | consensus disorder prediction | 200 | 224 | - | - | |
Sed04g0628 | 768 | FunFam | proline-rich receptor-like protein kinase PERK8 | 481 | 694 | - | - | |
Sed04g0628 | 768 | FunFam | Proline-rich receptor-like protein kinase PERK8 | 377 | 480 | - | - | |
Sed04g0628 | 768 | ProSitePatterns | Protein kinases ATP-binding region signature. | 411 | 433 | IPR017441 | GO:0005524(InterPro) | |
Sed04g0628 | 768 | SMART | serkin_6 | 405 | 679 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Sed04g0628 | 768 | SUPERFAMILY | Protein kinase-like (PK-like) | 385 | 679 | IPR011009 | - | |
Sed04g0628 | 768 | MobiDBLite | consensus disorder prediction | 225 | 288 | - | - | |
Sed04g0628 | 768 | Gene3D | Phosphorylase Kinase; domain 1 | 377 | 480 | - | - | |
Sed04g0628 | 768 | CDD | STKc_IRAK | 411 | 680 | - | - | |
Sed04g0628 | 768 | PANTHER | PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 | 254 | 715 | IPR047117 | - | |
Sed04g0628 | 768 | MobiDBLite | consensus disorder prediction | 728 | 768 | - | - | |
Sed04g0628 | 768 | Gene3D | Transferase(Phosphotransferase) domain 1 | 481 | 696 | - | - | |
Sed04g0628 | 768 | MobiDBLite | consensus disorder prediction | 20 | 36 | - | - | |
Sed04g0628 | 768 | MobiDBLite | consensus disorder prediction | 183 | 199 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed04g0628 | Sed-Chr4:4847736 | Sed11g2081 | Sed-Chr11:34752321 | 9.70E-140 | dispersed | |
Sed04g0628 | Sed-Chr4:4847736 | Sed06g1639 | Sed-Chr6:41169743 | 2.90E-229 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
78963 | PF07714 | PK_Tyr_Ser-Thr | 3.60E-43 | CL0016 | Sed | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed04g0628 | - | - | - | 0.0 |