Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed04g0640 ATGGATCTGGAAAGTGGGGTTGTTTGCCAAAAGAGTGCCAAGAAAGATTCATGGAAAACGGTTCTGATGATGGCTTATCAGAGCCTTGGGGTTGTTTATGGCGAGTTGGGCACTTCGCCTCTTTATGTTTATAAGAACACTTTTGCAGAAAATGATATTGGCCATTCTAAGAGCAATGATGAGGTTTATGGCGTTTTGTCCTTTGTTTTCTGGACTCTCACCATTGTTCCTTTGCTCAAGTATATATTTATTGTCCTTAAAGCCGATGATAATGGCGAGGGGGGTACATTTGCTTTGTATTCGTTACTGTGTCGACATGCCCGAGTTAGTTCATTGCCCAATTCCCAGTTGGCTGATTCTGAACTCACTGAGTATAAGATGGATGTTCTTGGTCAGCCATCTCAAGAAAGTTTTGGATTCAAACTCAAATCCGCCTTAGAAAAGCGCCGGGTTCTGCAGAAATTCTTGCTTGTTCTTGCTTTAATTGGGGCTTGCATGGTGATAGGGGATGGCATCCTAACACCAGCTATTTCGGTTCTTTCGGCGGTTTCTGGCCTCGAGCATACCATGGCGAAAGAGCATCACCAATATATAGTAATCCCAATTTCATGCGTCGTACTGATAGGCTTGTTTGCTCTTCAACACTATGGCACGCACAGGATTGGCTTCTTGTTTGCTCCAATAGTGATGTTGTGGCTATTCTGTATCAGTGCCATTGGCTTGTACAATATTATCCACTGGAATCCGGGTGTTTATAGAGCAATTTCTCCTCGTTACATGTTTCAATTTCTTAAGAAAACGCAAAAAGGAGGTTGGATGTCCCTTGGTGGAATTTTGCTCTGCATTACTGGTTCAGAGGCGATGTTTGCTGACCTTGGGCATTTTTCACAGTTGTCAATCAAGATTGCTTTCTCTTTTATGGTTTATCCTTCTCTCCTCCTAGCATACATGGGGCAAGCTGCCTATCTTTCTCAAAACTATACCACTCCAAATGACCATCGAATTGGGTTTTATGTATCGGTACCCGAGAAATTGAGGTGGCCTGTCCTTATTATTGCCGTGCTTGCTGCAGTAGTAGGAAGCCAGGCTATAATCACTGGAACCTTCTCGATTATAAAGCAGTGCACTGCTTTGGGTTGCTTTCCCCGAGTCAAAATCATCCATACGTCCTCGAAAGTTCACAGTCAGATCTATATCCCGGAGATTAATTGGATTTTAATGATACTATGCTTGGCTGTTACTCTTGGTTTCAGAGACACAAAGCGCTTGGGTCATGCCTCAGGTTTGGCAGTGATCACTGTCATGCTCGTTACTACGTGCTTAATGTCTCTCGTTATCGTCTTGTGCTGGCACCGCAATGTGTTTCTCGCCATAGGCTTCATATTTTTCTTTGGCACCATTGAATCTCTCTACTTTTCAGCTTCTCTTATCAAATTTCTTGAAGGAGCTTGGGTTCCCATTGCAATTTCTGTTGTATTCATGATCGTTATGTATGTCTGGCACTATGGTACTCTCAAGAAGTTTGAATTTGACCTCCAAAACAAGGTTTCGATTAACTGGCTACTTGGTTTGGGTCCCAGCTTAGGCATTGTAAGAGTCCGCGGTATTGGTGTCATAGAGACCGAGCTTGTTTCGGGTATCCCGGGTATTTTCACCCACTTTGTCACCAATATTCCTGCCTTCCATCAAGTTCTTGTTTTCCTTTGCATCAAATACGTTCCGGTGCCGCATGTAAGACCAGAGGAACGGTTTCTAATTGGTCGTATTGGTACGAGTGAATATAGACTCTATAGGTGCATTGTGCGGTATGGATATCGGGATGTTCACAAAGACGACGTAGATTTTGAGAATGATCTTATATGCAGCATAGCAGAGTTTATAAGGTCAGGGAGTGCAGAGTCTACTCACAAACAGGGCTTTGATAAAGATGGTGAAAAGATGACTGTTGTTGGGACATCTTCTACCTATGAAGATAGAATTCAGATGGCCGAGACCGATAACAATGAGGACACGGAAGAACTGTACAGAGATTCAGATACAAGGGAAATAAGGTCACCAGTTCCAGTTCAATTGAGAAAAAGAGTGCGTTTTGTCGTACCGGAGAGCCCGAAAATCAACACGGATGCAAGGGCAGAACTGCAAGAACTAATGGAAGCAAGAGAAGGAGGAGTAGCTTACATATTAGGAAGGTCGCATATGAAAGCAAAGCAAGGGTCGAGCACACTGAAAAGAGTGTCGATCGACTTCATTTACGAGTTTTTAAGGAAGAACAGCAGAGAAGCTGACTACCCTGTAGATTTATCACACTCATCATCAGCCCTTGAGGTGGGTATGATGTATCTTGTTTAG 2349 43.25 MDLESGVVCQKSAKKDSWKTVLMMAYQSLGVVYGELGTSPLYVYKNTFAENDIGHSKSNDEVYGVLSFVFWTLTIVPLLKYIFIVLKADDNGEGGTFALYSLLCRHARVSSLPNSQLADSELTEYKMDVLGQPSQESFGFKLKSALEKRRVLQKFLLVLALIGACMVIGDGILTPAISVLSAVSGLEHTMAKEHHQYIVIPISCVVLIGLFALQHYGTHRIGFLFAPIVMLWLFCISAIGLYNIIHWNPGVYRAISPRYMFQFLKKTQKGGWMSLGGILLCITGSEAMFADLGHFSQLSIKIAFSFMVYPSLLLAYMGQAAYLSQNYTTPNDHRIGFYVSVPEKLRWPVLIIAVLAAVVGSQAIITGTFSIIKQCTALGCFPRVKIIHTSSKVHSQIYIPEINWILMILCLAVTLGFRDTKRLGHASGLAVITVMLVTTCLMSLVIVLCWHRNVFLAIGFIFFFGTIESLYFSASLIKFLEGAWVPIAISVVFMIVMYVWHYGTLKKFEFDLQNKVSINWLLGLGPSLGIVRVRGIGVIETELVSGIPGIFTHFVTNIPAFHQVLVFLCIKYVPVPHVRPEERFLIGRIGTSEYRLYRCIVRYGYRDVHKDDVDFENDLICSIAEFIRSGSAESTHKQGFDKDGEKMTVVGTSSTYEDRIQMAETDNNEDTEELYRDSDTREIRSPVPVQLRKRVRFVVPESPKINTDARAELQELMEAREGGVAYILGRSHMKAKQGSSTLKRVSIDFIYEFLRKNSREADYPVDLSHSSSALEVGMMYLV 782
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 4946677 4953143 + Sed0014891.1 Sed04g0640 709243
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed04g0640 782 Pfam K+ potassium transporter integral membrane domain 25 521 IPR053951 -
Sed04g0640 782 Pfam K+ potassium transporter C-terminal domain 535 778 IPR053952 -
Sed04g0640 782 PANTHER OSMOTIC STRESS POTASSIUM TRANSPORTER 13 781 IPR003855 GO:0006813(PANTHER)|GO:0015079(PANTHER)|GO:0015079(InterPro)|GO:0016020(PANTHER)|GO:0016020(InterPro)|GO:0071805(InterPro)
Sed04g0640 782 NCBIfam potassium uptake protein 24 780 IPR003855 GO:0015079(InterPro)|GO:0016020(InterPro)|GO:0071805(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed04g0640 Sed-Chr4:4946677 Sed06g1626 Sed-Chr6:41035090 0.00E+00 dispersed
Sed03g2696 Sed-Chr3:43271128 Sed04g0640 Sed-Chr4:4946677 0.00E+00 wgd
Sed04g0640 Sed-Chr4:4946677 Sed06g1625 Sed-Chr6:41035090 0.00E+00 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed04g0640 K03549 - csv:101212925 1414.82