Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed04g0643 | ATGGCATCAAGATCCACCACAAACTTTATGGACCTCGCTTCTGGAGATCTACTGGATGTTCCTCATACACCTAGGCCACTGCCACGGGTAATAACTGTTCCTGGAATTATTTCTGAAATGGATGATTATGGGAGCAATGATGGAGATTCGGAGGCTTCATCTGTATGCCGTGAGCGGAAAATCATAGTTGTAAATATGTTGCCCTTGCAAGCTAAAAAAGATGGGCAATCTGGCAAATGGTGCTTCAGTTTGGACGAGGATTCAATTTATTTGCAGTTGAAGAATGGGTTTTCACCTGAGATAGAGGTTATATACGTGGGTTCCCTCAAGGTTGAAATCGACGCCAGCGAACAGGAAGAGGTTGCTCAGAGGCTGTTTGACAATTTTAACTGTGTGCCTACATTTCTACCTTGCGATCTCCAGAAGAAATTTTATCTTGGGTTCTGCAAACAGCAGCTATGGCCTTTATTTCATTACATGCTACCCATGTGCCCAGAGCACGGCGATCGCTTCGATCGGGTGCTTTGGCAGGCATATGTTTCTGCCAATAAAATATTTGCTGACAAGGTGATGGAAATCATCAATCCTGAAGAAGATTCCGTTTGGGTTCATGATTATCACTTAATGGTTCTTCCAACATTTTTGAGGAAGCGCTACAATAGAGTTAAACTTGGGTTTTTTCTGCATAGCCCGTTTCCGTCATCAGAAATCTACCGAACTTTGCCAGTTCGGGATGAGATTCTTCGTGGCCTGCTAAATTGTGATTTAGTTGGTTTTCATACGTTTGACTATGCTCGCCATTTCCTCTCATGTTGCAGCAGAATGTTGGGTCTGGACTACGAATCTAAGCGGGGACATATTGGACTAGATTATTATGGTCGCACTGTATATATCAAAATTTTGCCTGTAGGGATTCACATGGGTCGGTTGGAATCAGTGATGAATCTTCCATCTACATCTGCTAAAGTCAAAGAAATCCAAGATCAGTTCATGGGGAAGAAGTTAATTCTTGGTATTGATGACATGGACATTTTTAAAGGCATAAGCCTCAAGCTTCTCGCTGTCGAACAACTTTTACGGCAGCATCATGAGTTGCGAGGCAAAATAGTCCTGGTTCAAATAGTGAACCCTGCAAGGGGTTTAGGGAAAGATGTACAAGAAGCTCGTAAGGAAACCTACTTGGCTTCTGAAAGGATCAATAAAGTTTATGGTTTCAGCGACTACAAACCTATAATTTTGATTGATCGCCCTGTTCCACGTTTTGAGAAGACTGCTTATTATGCATTAGCAGAATGCTGCATAGTGAGTGCTGTAAGGGACGGTATGAATTTGGTTCCATACAAGTATATTGTTTGTAGGCAAGGAACTCCTCTTATGGATGATGCTATGGGCTTACCAGTTGGTTCTCCCCGGACAAGTATGCTTGTAGTGTCCGAGTTTATTGGTTGCTCGCCTTCTTTAAGTGGAGCTATCAGGGTTAACCCTTGGGACATTGATGCAGTTGCGGATGCCTTGGAATTGGCCTTAACCATGAAGGAGTCCGAGAAGCAGTTGCGGCATGAGAAACATTATCGATATGTCAGTACCCATGATATAGCGTATTGGTCTCGAAGTTTTATGCAGGATTTGGAGAGAGCATGTCAAGATCACTATCGTAAACGTTGTTGGGGAATTGGCTTGGGTCTGCGTTTTAGAGTTGTTTCTCTTTCTCCTGGGTTTAGGAAGTTAACAATTGATCACATCGTCTCAGCGTATAAGAGAACGCGTAGAAGGGCGATATTTTTGGATTATGATGGCACTATAATTTCACAAAGCTCCATAATTAAGACACCGAGCCCAGAAGTTATCTCTGTCTTGACAACGCTCTGCAATGATCCATGTAACACCGTGTTCATTGTTAGTGGGAGGGGGAGAAATTCTTTAGGTGAATGGTTTGCATCTTGTGAGCTGTTGGGGATTGCAGCAGAACATGGGTACTTTATAAGGTGGGGTGGAACTTCAGAATGGGAAACCAGTCAGTTGTCTTCTGATCTGGATTGGATTAAAATTGTAGAGCCAGTGATGAGATCATATACAGAAGCAACTGATGGGTCATCCATAGAACAAAAAGAGAGTGCTATAGTCTGGCATCATCAAGATGCCGATTCCGACTTCGGATCCTGTCAAGCTAAGGAATTGCTGGACCATCTAGAAAACGTACTTGCCAACGAACCAGCAGTTGTTAAAAGGGGCCAATATATTGTTGAAGTAAAGCCACAGGGAGTAAGCAAAGGCTTGGTGGCAGATAAGGTTCTTTCAAGAATGGTAGATAGCGGAAGGCCACCGGATTTCGTGATGTGCATTGGAGATGATAGATCAGATGAAGATATGTTTGAGAGCATATTGAGCACTGTCTCTAGCCCCTCGCTGCCTTCCGCTCCAGAAATTTTTGCCTGTACGGTTGGGCGAAAGCCAAGCAAGGCCAAGTTTTACCTTGACGATACTCCCGACGTCGTGAAATTGCTGCAAGGCCTTGCATCTTCGTCACATCCAAGACCTCGGCAACTACCACAAATGCGTGTTTCTTTCGAGAGTATTTTTTGA | 2583 | 43.52 | MASRSTTNFMDLASGDLLDVPHTPRPLPRVITVPGIISEMDDYGSNDGDSEASSVCRERKIIVVNMLPLQAKKDGQSGKWCFSLDEDSIYLQLKNGFSPEIEVIYVGSLKVEIDASEQEEVAQRLFDNFNCVPTFLPCDLQKKFYLGFCKQQLWPLFHYMLPMCPEHGDRFDRVLWQAYVSANKIFADKVMEIINPEEDSVWVHDYHLMVLPTFLRKRYNRVKLGFFLHSPFPSSEIYRTLPVRDEILRGLLNCDLVGFHTFDYARHFLSCCSRMLGLDYESKRGHIGLDYYGRTVYIKILPVGIHMGRLESVMNLPSTSAKVKEIQDQFMGKKLILGIDDMDIFKGISLKLLAVEQLLRQHHELRGKIVLVQIVNPARGLGKDVQEARKETYLASERINKVYGFSDYKPIILIDRPVPRFEKTAYYALAECCIVSAVRDGMNLVPYKYIVCRQGTPLMDDAMGLPVGSPRTSMLVVSEFIGCSPSLSGAIRVNPWDIDAVADALELALTMKESEKQLRHEKHYRYVSTHDIAYWSRSFMQDLERACQDHYRKRCWGIGLGLRFRVVSLSPGFRKLTIDHIVSAYKRTRRRAIFLDYDGTIISQSSIIKTPSPEVISVLTTLCNDPCNTVFIVSGRGRNSLGEWFASCELLGIAAEHGYFIRWGGTSEWETSQLSSDLDWIKIVEPVMRSYTEATDGSSIEQKESAIVWHHQDADSDFGSCQAKELLDHLENVLANEPAVVKRGQYIVEVKPQGVSKGLVADKVLSRMVDSGRPPDFVMCIGDDRSDEDMFESILSTVSSPSLPSAPEIFACTVGRKPSKAKFYLDDTPDVVKLLQGLASSSHPRPRQLPQMRVSFESIF | 860 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 4978685 | 4984532 | + | Sed0005706.3 | Sed04g0643 | 709246 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed04g0643 | 860 | Gene3D | Glycogen Phosphorylase B; | 52 | 311 | - | - | |
Sed04g0643 | 860 | CDD | GT20_TPS | 59 | 544 | IPR001830 | GO:0003824(InterPro)|GO:0005992(InterPro) | |
Sed04g0643 | 860 | SUPERFAMILY | HAD-like | 591 | 838 | IPR036412 | - | |
Sed04g0643 | 860 | Gene3D | Glycogen Phosphorylase B; | 312 | 528 | - | - | |
Sed04g0643 | 860 | FunFam | Alpha,alpha-trehalose-phosphate synthase | 313 | 528 | - | - | |
Sed04g0643 | 860 | FunFam | alpha,alpha-trehalose-phosphate synthase [UDP-forming] 6 | 52 | 311 | - | - | |
Sed04g0643 | 860 | PANTHER | TREHALOSE-6-PHOSPHATE SYNTHASE | 26 | 840 | IPR001830 | GO:0003824(InterPro)|GO:0004805(PANTHER)|GO:0005829(PANTHER)|GO:0005992(PANTHER)|GO:0005992(InterPro)|GO:0070413(PANTHER) | |
Sed04g0643 | 860 | FunFam | Trehalose-6-phosphate synthase 2 | 674 | 753 | - | - | |
Sed04g0643 | 860 | Pfam | Glycosyltransferase family 20 | 59 | 544 | IPR001830 | GO:0003824(InterPro)|GO:0005992(InterPro) | |
Sed04g0643 | 860 | FunFam | alpha,alpha-trehalose-phosphate synthase [UDP-forming] 6 | 590 | 707 | - | - | |
Sed04g0643 | 860 | CDD | HAD_TPP | 592 | 833 | - | - | |
Sed04g0643 | 860 | FunFam | Alpha,alpha-trehalose-phosphate synthase [UDP-forming] 6 | 720 | 851 | - | - | |
Sed04g0643 | 860 | SUPERFAMILY | UDP-Glycosyltransferase/glycogen phosphorylase | 59 | 548 | - | - | |
Sed04g0643 | 860 | NCBIfam | HAD-IIB family hydrolase | 592 | 793 | IPR006379 | - | |
Sed04g0643 | 860 | Gene3D | - | 590 | 717 | IPR023214 | - | |
Sed04g0643 | 860 | Gene3D | - | 719 | 848 | IPR023214 | - | |
Sed04g0643 | 860 | NCBIfam | trehalose-phosphatase | 589 | 838 | IPR003337 | GO:0005992(InterPro) | |
Sed04g0643 | 860 | Pfam | Trehalose-phosphatase | 594 | 828 | IPR003337 | GO:0005992(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed04g0641 | Sed-Chr4:4978685 | Sed04g0643 | Sed-Chr4:4978685 | 0.00E+00 | dispersed | |
Sed04g0643 | Sed-Chr4:4978685 | Sed06g1624 | Sed-Chr6:41020601 | 0.00E+00 | dispersed | |
Sed04g0642 | Sed-Chr4:4978685 | Sed04g0643 | Sed-Chr4:4978685 | 0.00E+00 | tandem |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed04g0643 | K16055 | - | csv:101212688 | 1631.31 |