Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed04g0643 ATGGCATCAAGATCCACCACAAACTTTATGGACCTCGCTTCTGGAGATCTACTGGATGTTCCTCATACACCTAGGCCACTGCCACGGGTAATAACTGTTCCTGGAATTATTTCTGAAATGGATGATTATGGGAGCAATGATGGAGATTCGGAGGCTTCATCTGTATGCCGTGAGCGGAAAATCATAGTTGTAAATATGTTGCCCTTGCAAGCTAAAAAAGATGGGCAATCTGGCAAATGGTGCTTCAGTTTGGACGAGGATTCAATTTATTTGCAGTTGAAGAATGGGTTTTCACCTGAGATAGAGGTTATATACGTGGGTTCCCTCAAGGTTGAAATCGACGCCAGCGAACAGGAAGAGGTTGCTCAGAGGCTGTTTGACAATTTTAACTGTGTGCCTACATTTCTACCTTGCGATCTCCAGAAGAAATTTTATCTTGGGTTCTGCAAACAGCAGCTATGGCCTTTATTTCATTACATGCTACCCATGTGCCCAGAGCACGGCGATCGCTTCGATCGGGTGCTTTGGCAGGCATATGTTTCTGCCAATAAAATATTTGCTGACAAGGTGATGGAAATCATCAATCCTGAAGAAGATTCCGTTTGGGTTCATGATTATCACTTAATGGTTCTTCCAACATTTTTGAGGAAGCGCTACAATAGAGTTAAACTTGGGTTTTTTCTGCATAGCCCGTTTCCGTCATCAGAAATCTACCGAACTTTGCCAGTTCGGGATGAGATTCTTCGTGGCCTGCTAAATTGTGATTTAGTTGGTTTTCATACGTTTGACTATGCTCGCCATTTCCTCTCATGTTGCAGCAGAATGTTGGGTCTGGACTACGAATCTAAGCGGGGACATATTGGACTAGATTATTATGGTCGCACTGTATATATCAAAATTTTGCCTGTAGGGATTCACATGGGTCGGTTGGAATCAGTGATGAATCTTCCATCTACATCTGCTAAAGTCAAAGAAATCCAAGATCAGTTCATGGGGAAGAAGTTAATTCTTGGTATTGATGACATGGACATTTTTAAAGGCATAAGCCTCAAGCTTCTCGCTGTCGAACAACTTTTACGGCAGCATCATGAGTTGCGAGGCAAAATAGTCCTGGTTCAAATAGTGAACCCTGCAAGGGGTTTAGGGAAAGATGTACAAGAAGCTCGTAAGGAAACCTACTTGGCTTCTGAAAGGATCAATAAAGTTTATGGTTTCAGCGACTACAAACCTATAATTTTGATTGATCGCCCTGTTCCACGTTTTGAGAAGACTGCTTATTATGCATTAGCAGAATGCTGCATAGTGAGTGCTGTAAGGGACGGTATGAATTTGGTTCCATACAAGTATATTGTTTGTAGGCAAGGAACTCCTCTTATGGATGATGCTATGGGCTTACCAGTTGGTTCTCCCCGGACAAGTATGCTTGTAGTGTCCGAGTTTATTGGTTGCTCGCCTTCTTTAAGTGGAGCTATCAGGGTTAACCCTTGGGACATTGATGCAGTTGCGGATGCCTTGGAATTGGCCTTAACCATGAAGGAGTCCGAGAAGCAGTTGCGGCATGAGAAACATTATCGATATGTCAGTACCCATGATATAGCGTATTGGTCTCGAAGTTTTATGCAGGATTTGGAGAGAGCATGTCAAGATCACTATCGTAAACGTTGTTGGGGAATTGGCTTGGGTCTGCGTTTTAGAGTTGTTTCTCTTTCTCCTGGGTTTAGGAAGTTAACAATTGATCACATCGTCTCAGCGTATAAGAGAACGCGTAGAAGGGCGATATTTTTGGATTATGATGGCACTATAATTTCACAAAGCTCCATAATTAAGACACCGAGCCCAGAAGTTATCTCTGTCTTGACAACGCTCTGCAATGATCCATGTAACACCGTGTTCATTGTTAGTGGGAGGGGGAGAAATTCTTTAGGTGAATGGTTTGCATCTTGTGAGCTGTTGGGGATTGCAGCAGAACATGGGTACTTTATAAGGTGGGGTGGAACTTCAGAATGGGAAACCAGTCAGTTGTCTTCTGATCTGGATTGGATTAAAATTGTAGAGCCAGTGATGAGATCATATACAGAAGCAACTGATGGGTCATCCATAGAACAAAAAGAGAGTGCTATAGTCTGGCATCATCAAGATGCCGATTCCGACTTCGGATCCTGTCAAGCTAAGGAATTGCTGGACCATCTAGAAAACGTACTTGCCAACGAACCAGCAGTTGTTAAAAGGGGCCAATATATTGTTGAAGTAAAGCCACAGGGAGTAAGCAAAGGCTTGGTGGCAGATAAGGTTCTTTCAAGAATGGTAGATAGCGGAAGGCCACCGGATTTCGTGATGTGCATTGGAGATGATAGATCAGATGAAGATATGTTTGAGAGCATATTGAGCACTGTCTCTAGCCCCTCGCTGCCTTCCGCTCCAGAAATTTTTGCCTGTACGGTTGGGCGAAAGCCAAGCAAGGCCAAGTTTTACCTTGACGATACTCCCGACGTCGTGAAATTGCTGCAAGGCCTTGCATCTTCGTCACATCCAAGACCTCGGCAACTACCACAAATGCGTGTTTCTTTCGAGAGTATTTTTTGA 2583 43.52 MASRSTTNFMDLASGDLLDVPHTPRPLPRVITVPGIISEMDDYGSNDGDSEASSVCRERKIIVVNMLPLQAKKDGQSGKWCFSLDEDSIYLQLKNGFSPEIEVIYVGSLKVEIDASEQEEVAQRLFDNFNCVPTFLPCDLQKKFYLGFCKQQLWPLFHYMLPMCPEHGDRFDRVLWQAYVSANKIFADKVMEIINPEEDSVWVHDYHLMVLPTFLRKRYNRVKLGFFLHSPFPSSEIYRTLPVRDEILRGLLNCDLVGFHTFDYARHFLSCCSRMLGLDYESKRGHIGLDYYGRTVYIKILPVGIHMGRLESVMNLPSTSAKVKEIQDQFMGKKLILGIDDMDIFKGISLKLLAVEQLLRQHHELRGKIVLVQIVNPARGLGKDVQEARKETYLASERINKVYGFSDYKPIILIDRPVPRFEKTAYYALAECCIVSAVRDGMNLVPYKYIVCRQGTPLMDDAMGLPVGSPRTSMLVVSEFIGCSPSLSGAIRVNPWDIDAVADALELALTMKESEKQLRHEKHYRYVSTHDIAYWSRSFMQDLERACQDHYRKRCWGIGLGLRFRVVSLSPGFRKLTIDHIVSAYKRTRRRAIFLDYDGTIISQSSIIKTPSPEVISVLTTLCNDPCNTVFIVSGRGRNSLGEWFASCELLGIAAEHGYFIRWGGTSEWETSQLSSDLDWIKIVEPVMRSYTEATDGSSIEQKESAIVWHHQDADSDFGSCQAKELLDHLENVLANEPAVVKRGQYIVEVKPQGVSKGLVADKVLSRMVDSGRPPDFVMCIGDDRSDEDMFESILSTVSSPSLPSAPEIFACTVGRKPSKAKFYLDDTPDVVKLLQGLASSSHPRPRQLPQMRVSFESIF 860
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 4978685 4984532 + Sed0005706.3 Sed04g0643 709246
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed04g0643 860 Gene3D Glycogen Phosphorylase B; 52 311 - -
Sed04g0643 860 CDD GT20_TPS 59 544 IPR001830 GO:0003824(InterPro)|GO:0005992(InterPro)
Sed04g0643 860 SUPERFAMILY HAD-like 591 838 IPR036412 -
Sed04g0643 860 Gene3D Glycogen Phosphorylase B; 312 528 - -
Sed04g0643 860 FunFam Alpha,alpha-trehalose-phosphate synthase 313 528 - -
Sed04g0643 860 FunFam alpha,alpha-trehalose-phosphate synthase [UDP-forming] 6 52 311 - -
Sed04g0643 860 PANTHER TREHALOSE-6-PHOSPHATE SYNTHASE 26 840 IPR001830 GO:0003824(InterPro)|GO:0004805(PANTHER)|GO:0005829(PANTHER)|GO:0005992(PANTHER)|GO:0005992(InterPro)|GO:0070413(PANTHER)
Sed04g0643 860 FunFam Trehalose-6-phosphate synthase 2 674 753 - -
Sed04g0643 860 Pfam Glycosyltransferase family 20 59 544 IPR001830 GO:0003824(InterPro)|GO:0005992(InterPro)
Sed04g0643 860 FunFam alpha,alpha-trehalose-phosphate synthase [UDP-forming] 6 590 707 - -
Sed04g0643 860 CDD HAD_TPP 592 833 - -
Sed04g0643 860 FunFam Alpha,alpha-trehalose-phosphate synthase [UDP-forming] 6 720 851 - -
Sed04g0643 860 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 59 548 - -
Sed04g0643 860 NCBIfam HAD-IIB family hydrolase 592 793 IPR006379 -
Sed04g0643 860 Gene3D - 590 717 IPR023214 -
Sed04g0643 860 Gene3D - 719 848 IPR023214 -
Sed04g0643 860 NCBIfam trehalose-phosphatase 589 838 IPR003337 GO:0005992(InterPro)
Sed04g0643 860 Pfam Trehalose-phosphatase 594 828 IPR003337 GO:0005992(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed04g0641 Sed-Chr4:4978685 Sed04g0643 Sed-Chr4:4978685 0.00E+00 dispersed
Sed04g0643 Sed-Chr4:4978685 Sed06g1624 Sed-Chr6:41020601 0.00E+00 dispersed
Sed04g0642 Sed-Chr4:4978685 Sed04g0643 Sed-Chr4:4978685 0.00E+00 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed04g0643 K16055 - csv:101212688 1631.31