Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed04g0653 ATGTCCGTATCGATTTCCAACTGCTTCTCTGAGCTACTCTGCCACGAGGATTCCTCCGGCGTCTTGTCCGGCGGCGATTCGCCGGGATCTTCTTCCGACCTCGAATCTCCGGATCGCGTCGAGGAATCCATCGCCGTCTTCATCAAGGACGAGCCTCACTTTGTTCCCGATTACCACTCTTTGTCGCTTCACGCCGCCGCTAGATTAGACTCTGTTGCATGGATTCTTAAGGTTCAAGCGTATTACGGTTTTCAGCCGTTGACGGCGTATCTCTCCGTCAACTATTTGGATCGATTCCTCTGTTCACGTCGTTTGCCGCAAACAAATGGGTGGCCTTTGCAACTCCTCTCTGTTGCTTGCCTCTCATTGGCTGCTAAAATGGAGGAACCTCTTGTTCCTGCTTTACTCGATCTTCAGATTGAGGGGGCTAAATATGTATTTGAACCCAGAACAATATGCAGGATGGAATTACTGGTGTTGAGGGTATTGGATTGGCGGTTGCGTTCGGTAACGCCGTTCAATTTCATTGCTTTCTTTGCTTGCAAGCTCGATCCGTCCGGAGATTTCATCGGCTTTCTTATCTCGAGAGCAACCGAAATTATAGTGTCGAATATTCGAGAGGTTATCTTTCTGGAGTACTCGCCATCGTGTATTGCGGCGGCTGCATTGCTTTGTGCGGCAAATGAAGTCGCGGATTTGTCGGTTGTCGATCCGGAACATGCAGAATCATGGTGCAGGGGGCTAAGGAAAGAAAATATTATGGGCTGCTACCGGTTAATGCGAGAAATTGTTCATGATAGTAGCCAGATCAAGTCCCCTGAAATCTTACCACAGTTTACACTGACCGTCCGAACTAGTTTGGGATCGAGCGACTTATCCTCCTACGGCTCTTCATCGTCGTCCTCTTCCTCATCTTCGTCGTCACCAAACAAAAGGAGAAAACTAAGCCAGAGCCTGTGGGTAGACAATGACAAAGGTAGCACTGAAGAATGA 993 48.74 MSVSISNCFSELLCHEDSSGVLSGGDSPGSSSDLESPDRVEESIAVFIKDEPHFVPDYHSLSLHAAARLDSVAWILKVQAYYGFQPLTAYLSVNYLDRFLCSRRLPQTNGWPLQLLSVACLSLAAKMEEPLVPALLDLQIEGAKYVFEPRTICRMELLVLRVLDWRLRSVTPFNFIAFFACKLDPSGDFIGFLISRATEIIVSNIREVIFLEYSPSCIAAAALLCAANEVADLSVVDPEHAESWCRGLRKENIMGCYRLMREIVHDSSQIKSPEILPQFTLTVRTSLGSSDLSSYGSSSSSSSSSSSSPNKRRKLSQSLWVDNDKGSTEE 330
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 5135902 5139647 - Sed0020557.1 Sed04g0653 709256
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed04g0653 330 Gene3D - 169 231 - -
Sed04g0653 330 CDD CYCLIN_AtCycD-like_rpt2 170 260 - -
Sed04g0653 330 PANTHER CYCLINS 43 267 IPR039361 GO:0000079(PANTHER)|GO:0000307(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0016538(PANTHER)|GO:0044772(PANTHER)
Sed04g0653 330 CDD CYCLIN_AtCycD-like_rpt1 67 165 - -
Sed04g0653 330 SMART Cyclin_C_2 170 304 IPR004367 -
Sed04g0653 330 SMART cyclin_7 73 161 IPR013763 -
Sed04g0653 330 Pfam Cyclin, N-terminal domain 46 168 IPR006671 -
Sed04g0653 330 SUPERFAMILY Cyclin-like 152 265 IPR036915 -
Sed04g0653 330 SUPERFAMILY Cyclin-like 39 167 IPR036915 -
Sed04g0653 330 Gene3D - 62 168 - -
Sed04g0653 330 MobiDBLite consensus disorder prediction 288 323 - -
Sed04g0653 330 Pfam Cyclin, C-terminal domain 170 272 IPR004367 -
Sed04g0653 330 ProSitePatterns Cyclins signature. 68 99 IPR048258 -
Sed04g0653 330 MobiDBLite consensus disorder prediction 288 330 - -
Sed04g0653 330 FunFam D2/4-type cyclin 51 168 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed04g0653 Sed-Chr4:5135902 Sed11g0784 Sed-Chr11:14952378 2.00E-105 dispersed
Sed04g0653 Sed-Chr4:5135902 Sed06g1605 Sed-Chr6:40862026 3.10E-135 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed04g0653 K18810 - csv:101209417 483.026