Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed04g0653 | ATGTCCGTATCGATTTCCAACTGCTTCTCTGAGCTACTCTGCCACGAGGATTCCTCCGGCGTCTTGTCCGGCGGCGATTCGCCGGGATCTTCTTCCGACCTCGAATCTCCGGATCGCGTCGAGGAATCCATCGCCGTCTTCATCAAGGACGAGCCTCACTTTGTTCCCGATTACCACTCTTTGTCGCTTCACGCCGCCGCTAGATTAGACTCTGTTGCATGGATTCTTAAGGTTCAAGCGTATTACGGTTTTCAGCCGTTGACGGCGTATCTCTCCGTCAACTATTTGGATCGATTCCTCTGTTCACGTCGTTTGCCGCAAACAAATGGGTGGCCTTTGCAACTCCTCTCTGTTGCTTGCCTCTCATTGGCTGCTAAAATGGAGGAACCTCTTGTTCCTGCTTTACTCGATCTTCAGATTGAGGGGGCTAAATATGTATTTGAACCCAGAACAATATGCAGGATGGAATTACTGGTGTTGAGGGTATTGGATTGGCGGTTGCGTTCGGTAACGCCGTTCAATTTCATTGCTTTCTTTGCTTGCAAGCTCGATCCGTCCGGAGATTTCATCGGCTTTCTTATCTCGAGAGCAACCGAAATTATAGTGTCGAATATTCGAGAGGTTATCTTTCTGGAGTACTCGCCATCGTGTATTGCGGCGGCTGCATTGCTTTGTGCGGCAAATGAAGTCGCGGATTTGTCGGTTGTCGATCCGGAACATGCAGAATCATGGTGCAGGGGGCTAAGGAAAGAAAATATTATGGGCTGCTACCGGTTAATGCGAGAAATTGTTCATGATAGTAGCCAGATCAAGTCCCCTGAAATCTTACCACAGTTTACACTGACCGTCCGAACTAGTTTGGGATCGAGCGACTTATCCTCCTACGGCTCTTCATCGTCGTCCTCTTCCTCATCTTCGTCGTCACCAAACAAAAGGAGAAAACTAAGCCAGAGCCTGTGGGTAGACAATGACAAAGGTAGCACTGAAGAATGA | 993 | 48.74 | MSVSISNCFSELLCHEDSSGVLSGGDSPGSSSDLESPDRVEESIAVFIKDEPHFVPDYHSLSLHAAARLDSVAWILKVQAYYGFQPLTAYLSVNYLDRFLCSRRLPQTNGWPLQLLSVACLSLAAKMEEPLVPALLDLQIEGAKYVFEPRTICRMELLVLRVLDWRLRSVTPFNFIAFFACKLDPSGDFIGFLISRATEIIVSNIREVIFLEYSPSCIAAAALLCAANEVADLSVVDPEHAESWCRGLRKENIMGCYRLMREIVHDSSQIKSPEILPQFTLTVRTSLGSSDLSSYGSSSSSSSSSSSSPNKRRKLSQSLWVDNDKGSTEE | 330 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 5135902 | 5139647 | - | Sed0020557.1 | Sed04g0653 | 709256 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed04g0653 | 330 | Gene3D | - | 169 | 231 | - | - | |
Sed04g0653 | 330 | CDD | CYCLIN_AtCycD-like_rpt2 | 170 | 260 | - | - | |
Sed04g0653 | 330 | PANTHER | CYCLINS | 43 | 267 | IPR039361 | GO:0000079(PANTHER)|GO:0000307(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0016538(PANTHER)|GO:0044772(PANTHER) | |
Sed04g0653 | 330 | CDD | CYCLIN_AtCycD-like_rpt1 | 67 | 165 | - | - | |
Sed04g0653 | 330 | SMART | Cyclin_C_2 | 170 | 304 | IPR004367 | - | |
Sed04g0653 | 330 | SMART | cyclin_7 | 73 | 161 | IPR013763 | - | |
Sed04g0653 | 330 | Pfam | Cyclin, N-terminal domain | 46 | 168 | IPR006671 | - | |
Sed04g0653 | 330 | SUPERFAMILY | Cyclin-like | 152 | 265 | IPR036915 | - | |
Sed04g0653 | 330 | SUPERFAMILY | Cyclin-like | 39 | 167 | IPR036915 | - | |
Sed04g0653 | 330 | Gene3D | - | 62 | 168 | - | - | |
Sed04g0653 | 330 | MobiDBLite | consensus disorder prediction | 288 | 323 | - | - | |
Sed04g0653 | 330 | Pfam | Cyclin, C-terminal domain | 170 | 272 | IPR004367 | - | |
Sed04g0653 | 330 | ProSitePatterns | Cyclins signature. | 68 | 99 | IPR048258 | - | |
Sed04g0653 | 330 | MobiDBLite | consensus disorder prediction | 288 | 330 | - | - | |
Sed04g0653 | 330 | FunFam | D2/4-type cyclin | 51 | 168 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed04g0653 | Sed-Chr4:5135902 | Sed11g0784 | Sed-Chr11:14952378 | 2.00E-105 | dispersed | |
Sed04g0653 | Sed-Chr4:5135902 | Sed06g1605 | Sed-Chr6:40862026 | 3.10E-135 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed04g0653 | K18810 | - | csv:101209417 | 483.026 |