Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Sed04g0660 ATGGCTAAAACCCCTCTTTTCTCCCGCCGGCGAAGGTCCGATCAAATCGACGGTCTGGATCGCCTCCCCATCTCGGATTCCGACGTCCATGTTCTCGCCGTCGACGACAGCCTCGTTGACCGTACCGTTATTGAGCGGCTCCTCCGCCTCACCGCCTGCCGGGTTACTGCAGTAGATAGCGGAATTAGAGCTCTGCAATATCTTGGACTGCAAGAAGAGGCCAATTCCCAAGTTGATTTTGATGGATTGAAGGTGGATATGATTATCACTGACTACTGTATGCCAGGGATGACAGGCTACGAATTGCTCAAGAAAATAAAGGAATGTTCATCTCTGAGAGAGATTCCGGTGGTGATAATGTCGTCGGAAAACGTGGTGGCGAGGATAGACCGGTGTTTACAGGAAGGGGCAGAGGATTTCATAGTGAAGCCGGTGAAATTATCAGATGTGAAACGTCTCAGGGAATATATGGTGGGGGACGAAAAGATTACAACTGGGATCAACAAAAGGAAGCTACCAGAGCCGTCTGATCAAGCCACGTCAGATTCGTCTCCATCATCTAATATATCACCCTCCGATTCGCTTCAATCCTCTCCATCACCATCAGAGCCTTCTTCTCCGACATCCACTCCTCAATCCGACGGCTCTGAATGA 654 49.85 MAKTPLFSRRRRSDQIDGLDRLPISDSDVHVLAVDDSLVDRTVIERLLRLTACRVTAVDSGIRALQYLGLQEEANSQVDFDGLKVDMIITDYCMPGMTGYELLKKIKECSSLREIPVVIMSSENVVARIDRCLQEGAEDFIVKPVKLSDVKRLREYMVGDEKITTGINKRKLPEPSDQATSDSSPSSNISPSDSLQSSPSPSEPSSPTSTPQSDGSE 217
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
4 5217170 5218900 + Sed0023476.1 Sed04g0660 709263
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Sed04g0660 217 MobiDBLite consensus disorder prediction 166 217 - -
Sed04g0660 217 Pfam Response regulator receiver domain 31 150 IPR001789 GO:0000160(InterPro)
Sed04g0660 217 MobiDBLite consensus disorder prediction 177 217 - -
Sed04g0660 217 ProSiteProfiles Response regulatory domain profile. 30 158 IPR001789 GO:0000160(InterPro)
Sed04g0660 217 CDD REC_typeA_ARR 31 153 - -
Sed04g0660 217 PANTHER TWO-COMPONENT RESPONSE REGULATOR 27 203 IPR045279 GO:0009736(InterPro)
Sed04g0660 217 SUPERFAMILY CheY-like 28 155 IPR011006 -
Sed04g0660 217 SMART REC_2 29 154 IPR001789 GO:0000160(InterPro)
Sed04g0660 217 Gene3D - 29 196 - -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed04g0660 Sed-Chr4:5217170 Sed12g1910 Sed-Chr12:30226674 1.80E-43 dispersed
Sed12g1909 Sed-Chr12:30226674 Sed04g0660 Sed-Chr4:5217170 1.70E-47 wgd
Sed04g0660 Sed-Chr4:5217170 Sed06g1597 Sed-Chr6:40795287 8.10E-76 wgd
Sed04g0660 Sed-Chr4:5217170 Sed08g0172 Sed-Chr8:951671 2.90E-49 wgd
       

Transcription factors information


Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
38054 PF00072 Response_reg 3.60E-21 CL0304 Sed TR
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed04g0660 K14492 - csv:101209506 302.753