Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed04g0660 | ATGGCTAAAACCCCTCTTTTCTCCCGCCGGCGAAGGTCCGATCAAATCGACGGTCTGGATCGCCTCCCCATCTCGGATTCCGACGTCCATGTTCTCGCCGTCGACGACAGCCTCGTTGACCGTACCGTTATTGAGCGGCTCCTCCGCCTCACCGCCTGCCGGGTTACTGCAGTAGATAGCGGAATTAGAGCTCTGCAATATCTTGGACTGCAAGAAGAGGCCAATTCCCAAGTTGATTTTGATGGATTGAAGGTGGATATGATTATCACTGACTACTGTATGCCAGGGATGACAGGCTACGAATTGCTCAAGAAAATAAAGGAATGTTCATCTCTGAGAGAGATTCCGGTGGTGATAATGTCGTCGGAAAACGTGGTGGCGAGGATAGACCGGTGTTTACAGGAAGGGGCAGAGGATTTCATAGTGAAGCCGGTGAAATTATCAGATGTGAAACGTCTCAGGGAATATATGGTGGGGGACGAAAAGATTACAACTGGGATCAACAAAAGGAAGCTACCAGAGCCGTCTGATCAAGCCACGTCAGATTCGTCTCCATCATCTAATATATCACCCTCCGATTCGCTTCAATCCTCTCCATCACCATCAGAGCCTTCTTCTCCGACATCCACTCCTCAATCCGACGGCTCTGAATGA | 654 | 49.85 | MAKTPLFSRRRRSDQIDGLDRLPISDSDVHVLAVDDSLVDRTVIERLLRLTACRVTAVDSGIRALQYLGLQEEANSQVDFDGLKVDMIITDYCMPGMTGYELLKKIKECSSLREIPVVIMSSENVVARIDRCLQEGAEDFIVKPVKLSDVKRLREYMVGDEKITTGINKRKLPEPSDQATSDSSPSSNISPSDSLQSSPSPSEPSSPTSTPQSDGSE | 217 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 5217170 | 5218900 | + | Sed0023476.1 | Sed04g0660 | 709263 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed04g0660 | 217 | MobiDBLite | consensus disorder prediction | 166 | 217 | - | - | |
Sed04g0660 | 217 | Pfam | Response regulator receiver domain | 31 | 150 | IPR001789 | GO:0000160(InterPro) | |
Sed04g0660 | 217 | MobiDBLite | consensus disorder prediction | 177 | 217 | - | - | |
Sed04g0660 | 217 | ProSiteProfiles | Response regulatory domain profile. | 30 | 158 | IPR001789 | GO:0000160(InterPro) | |
Sed04g0660 | 217 | CDD | REC_typeA_ARR | 31 | 153 | - | - | |
Sed04g0660 | 217 | PANTHER | TWO-COMPONENT RESPONSE REGULATOR | 27 | 203 | IPR045279 | GO:0009736(InterPro) | |
Sed04g0660 | 217 | SUPERFAMILY | CheY-like | 28 | 155 | IPR011006 | - | |
Sed04g0660 | 217 | SMART | REC_2 | 29 | 154 | IPR001789 | GO:0000160(InterPro) | |
Sed04g0660 | 217 | Gene3D | - | 29 | 196 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed04g0660 | Sed-Chr4:5217170 | Sed12g1910 | Sed-Chr12:30226674 | 1.80E-43 | dispersed | |
Sed12g1909 | Sed-Chr12:30226674 | Sed04g0660 | Sed-Chr4:5217170 | 1.70E-47 | wgd | |
Sed04g0660 | Sed-Chr4:5217170 | Sed06g1597 | Sed-Chr6:40795287 | 8.10E-76 | wgd | |
Sed04g0660 | Sed-Chr4:5217170 | Sed08g0172 | Sed-Chr8:951671 | 2.90E-49 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
38054 | PF00072 | Response_reg | 3.60E-21 | CL0304 | Sed | TR |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed04g0660 | K14492 | - | csv:101209506 | 302.753 |