Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed04g0666 ATGAACGGGGCTCGCACGTGTCCGGAGAGAGACGGCGGCGGTGGCGACGGCGGAGGAATCATGTTGTTTGGGGTGAGGTTGAGGGAGGGAAATGGGTGGTTTAGGAAGAGTGTTAGCATGAATAACCTGTGCCAATACGAGCAGGCCGTTAATCAGATTCAGGACTTAAATAACGCCGCCGATGACGGCTATGCTTCTGATGATGTCGTTCACCCATCCGGCCGTTCCCACGCCCGAAAGAGAGGGATTCCGTGGACAGAGGAAGAACATAGGCTGTTTTTGTTGGGATTACAGAAGGTTGGGAAGGGAGATTGGAGAGGGATTTCTAGGAATTTTGTGAAGACTCGTACGCCAACGCAGGTTGCCAGTCATGCTCAGAAATACTTTCTTCGCCGGAATAATTTTAATCGCCGCCGCCGAAGATCCAGCCTTTTTGATATCACCGCCGATACAGTAATTTCCTTTCCTATGTTTTTCTTTTACTGGCTACATTCATTTTTGGGTATTGTTTTTTTTTTCTTTTTGATATTCATGATTCTTCGGGTGAGTTTGCACACACTTTATTGTCACGACTCACCGCACATGGTTCCTAACTCTACAACGGTTAGAATATCAATGATGTTAATAAAACACGAATAA 639 46.32 MNGARTCPERDGGGGDGGGIMLFGVRLREGNGWFRKSVSMNNLCQYEQAVNQIQDLNNAADDGYASDDVVHPSGRSHARKRGIPWTEEEHRLFLLGLQKVGKGDWRGISRNFVKTRTPTQVASHAQKYFLRRNNFNRRRRRSSLFDITADTVISFPMFFFYWLHSFLGIVFFFFLIFMILRVSLHTLYCHDSPHMVPNSTTVRISMMLIKHE 212
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 5258186 5260927 + Sed0020792.2 Sed04g0666 709269

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed04g0666 212 CDD SANT 84 128 IPR001005 -
Sed04g0666 212 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 77 133 IPR017930 -
Sed04g0666 212 ProSiteProfiles SANT domain profile. 85 133 IPR017884 -
Sed04g0666 212 SMART sant 81 131 IPR001005 -
Sed04g0666 212 Gene3D - 83 135 - -
Sed04g0666 212 SUPERFAMILY Homeodomain-like 78 134 IPR009057 -
Sed04g0666 212 Pfam Myb-like DNA-binding domain 84 129 IPR001005 -
Sed04g0666 212 FunFam transcription factor MYB1R1 83 134 - -
Sed04g0666 212 ProSiteProfiles Myb-like domain profile. 77 129 IPR001005 -
Sed04g0666 212 PANTHER TRANSCRIPTION FACTOR KUA1 18 149 IPR052245 GO:0009723(PANTHER)|GO:0009739(PANTHER)
Sed04g0666 212 NCBIfam myb-like DNA-binding domain, SHAQKYF class 80 131 IPR006447 GO:0003677(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed04g0666 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed04g0666 Sed-Chr4:5258186 Sed12g1912 Sed-Chr12:30256528 2.90E-46 dispersed
Sed04g0665 Sed-Chr4:5258186 Sed04g0666 Sed-Chr4:5258186 4.20E-85 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g806 . . . . . . . . Cmo04g01686 . . . . . Sed04g0666 . Cpe01g01422 Bhi07g01651 Tan04g1157 Cmetu10g0115 Lac13g0251 Hepe10g1689 . . Cla05g02500 Cam05g2684 Cec05g2717 Cco05g2752 Clacu05g2687 Cmu05g2541 Cre05g2656 . . . Cone12ag0614 . Csa05g02385 Chy10g00949 Cme10g00477 . . . . . . . . . . . Cma04g01608 . Car04g01650 . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013797 0 1 0 0 0 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 2 1 1 25
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
38058 PF00249 Myb_DNA-binding 9.60E-11 CL0123 Sed TF