Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed04g0670 ATGCAACACAGGAGCCCCTCTTCCACGGTTCGACTCGGTCGAATCCAGCCCCAGGCCCCCGGGCATCGCACCATTTTCTGCAATGACTCAGAAGCTAATCTCATTGTCAATTTCAGGGGGAATTCGGTTTCTACCACTAAGTACAACTTTTTCACTTTCTTACCTAAAGGTTTGTTTGAACAGTTCAGGCGTGTGGCTAACCTATACTTTCTTACCATCTCAATCTTATCCACCACACCCATCAGTCCTGTGCATCCAATTACAAATGTTGTCCCTTTAAGTTTGGTTCTACTCGTCTCTCTCATTAAAGAAGCATTTGAAGACTGGAAACGACTCCAGAATGATATGACAATTAATAATAATCTTGTCGATGTGCTGCAAGATCAAAAGTGGGTGAGCGTTCCTTGGAAAAGGTTGCAGGTTGGGGACATTGTTAGGATTCAGCAAGATGGATTTTTTCCTGCAGATCTTCTTTTCCTTGCTGGTACAAATCCAGATGGTGTCTGCTACATTGAGACTGCTAACTTGGACGGGGAGACGAATTTGAAGATTAGAAAGGCCCTAGAAAAGACATGGGATTACCTGACTCCAGAGAAGGCATCTGAATTTAAAGGTGAAGTACAATGCGAGCAACCAAACAATTCACTCTACACTTTCACAGGCAATGTTATCATTGAGAAGCAAACGTTACCTCTCAGCCCAAACCAACTTTTATTGCGAGGATGCAGTCTCAGGAACACTGAATATATTGTTGGGGCTGTTATTTTTACAGGCCATGAAACAAAGGTTATGATGAATGCTATGAATGTTCCCTCCAAAAGAAGTACTCTGGAGAAAAAACTTGACAAACTCATACTTGCACTTTTTTCTACTCTCTTTCTCATGTGTTTGATTGGTGCAATTGGCAGTGGCGTGTTTGTAAACGAAAAGTACTACTACTTAGCTCTTGAAAGGGGAGGGGAAAACCAATTTAACCCTAGCAACCGAATTCTGGTTATCATTTTGACCATGTTTACCCTGATTACTTTGTACTCAACTATCATTCCTATTTCTCTTTATGTTTCTATTGAGATGATCAAATTTATTCAATCGACCCAATATATCAATAAGGATCTAAATATGTTTCATGCTGATAGCAATACCCCTGCATTGGCTAGAACTTCCAATCTGAACGAAGAACTTGGACAGGTAGAGTACATCTTTTCAGATAAAACTGGTACCCTTACCAGAAATCTAATGGAGTTCTTTAAGTGTTCAATCGGTGGAGAGATATATGGTACTGGTATCACTGAAATAGAGAGGGGAATTGCTGAGCAGAATGGCTTGAAAGTGGAAGAGGAGCACAAATCGTCTGATGCAGTACAAGAAAAGGGATTTAATTTTGATGATGCAAGGCTTATGAAAGGAGCATGGAGAAATGAGCCCAACTCTGATCTTTGTAAGGAATTTTTTAGATGCCTTGCTATTTGTCATACCGTACTCCCTGAGGGTGATGAATCCCCCGAAAAGATCAGATATCAAGCAGCATCACCTGATGAGGCTGCATTGGTAACTGCTGCTAAGAACTTTGGCTTCTTCTTTTACAGGCGAACACCTACGACAATATGTGTTCGTGAATCTCATGTTGAGAAGATGGGTACAATCCTAGATGCTTCTTATGAAGTTCTCAATGTACTTGAGTTCAATAGTGTAAGGAAGCGTCAGTCGGTGGTGTGTCGTTATTCCGATGGCAGGCTTGTCTTGTACTGCAAGGGTGCTGATACCGTAATATATGAGAGATTGGCTGTTGGAAATGATAATCTGAAGAATGTAACGAGGGATCACTTGGAGAAATTTGGATGTTCTGGTTTGAGAACCCTATGCCTTGCTTATAGAGATTTGCATCCTGACGAGTATGAAAGCTGGAATGAGGAATTCATTCAAGCTAAGTCTTCACTAAAAGATCGTGAAAAGAAATTGGATGGGGTCGCAGAACTTATTGAGAAAGACCTTACGATGGTTGGCTGTACAGCTATAGAAGATAAGCTTCAAGAAGGAGTACCAAGCTGTATACAGACACTTGCTAGAGCTGGTATCAAGATTTGGGTGCTAACAGGGGACAAGATGGAAACTGCTATTAATATAGCTTATGCTTGCGATTTAATAAACAATGAAATGAAGCAATTTATTATCAGTTCAGAAACAGATGCAATTAGAGAAGTTGAAGACAAGGGTGATCAAGTAGAACTTGCACGTTTTACTAGAGAAGAAGTAAAAAAGGAATTGAAGAAATGCCTTGAGGAAGCGCAGCAGTGTTTACAATCTGTATCTCCTCCAAAATTAGCACTTGTTATAGATGGAAAATGTTTGATGTATGCATTAGATCCAAGTCTGCGAGTTACTTTACTAAATTTGAGCTTGAATTGTAGTTCGGTTGTTTGCTGCCGGGTTTCTCCTTTGCAGAAAGCACAGGTGACAAGTCTGGTGAAGAAAGGTGCACAGAAAATAACACTTAGTATTGGAGATGGTGCTAATGATGTTAGCATGATTCAAGCAGCTCATGTGGGCATTGGAATAAGTGGGCAGGAGGGAATGCAAGCAGTGATGGCCAGTGATTTTGCTATTGCCCAGTTTCGCTTCCTCACAGATTTGCTTCTTGTGCATGGGCGATGGTCATATCTTAGAATATGCAAGGTGGTCACATACTTCGTTTACAAGAATCTTACGTTCACTGTAACCCAGTTTTGGTTCACCTTTCAAACTGGATTCTCTGGTCAAAGATTCTATGATGATTGGTTCCAGTCATTGTATAATGTCATATTTACCGCCTTACCGGTAATAATCGTGGGACTGTTTGACAAGGATGTGAGTGCATTCCTATCCAAAAAGTACCCTGAGCTCTACAAAGAGGGAATAAGAAATGTGTTCTTCAAGTGGAGAGTTGTGATAACTTGGGCTATCTTTTCCATCTACCAATCCTTAGTGTTTTATTATTTCATAACCGTTTGCAGTATCAGCAGTCAGTCGTCTAATGGCAAGGTGTTTGGTCTGTGGGATATCAGCACGATGACTTTCACATGCATCGTAGTGACTGTAAATTTGCGGCTGCTTATGACCTGCAATTCAATTACAAAGTGGCATTACATTACGGTTGGAGGAAGCATTTTAGCATGGTTCACATTTATTTTGATATATTCTAGCATAATAACATCACATGATAGGCAGGAAAATGTATATTTCGTCATATATGTCGTAATGAGTACATTCTACTTTTACCTTGCTGTCATCCTTGTCCCCGTCGTTGCGCTTCTTTGTGATTTCGCTTACCAAGGCATTCAGAGATGGTTTTTCCCCTACGATTATCAGATAGTTCAAGAAATTCATAGACACGAACCAGAAGGTAGACGTAAAGCAGCATTGCTGGAGATTCAGAACAATCTTACACCGGAAGAGGCAAGAAGCTATGCCATGTCTCAACTCCCGCGAGAGTTATCGACGCACACTGGCTTTGCTTTCGACTCACCTGGCTACGAGTCGTTTTTTGCTGCACAGCTTGGTGTTTATGCCCCACAGAAGCCATGGGATGTTGCCAAGAGAGCCAGTGTTAAGTCGAAACCAAAGACTAAGGAAAAGAAATGA 3618 41.02 MQHRSPSSTVRLGRIQPQAPGHRTIFCNDSEANLIVNFRGNSVSTTKYNFFTFLPKGLFEQFRRVANLYFLTISILSTTPISPVHPITNVVPLSLVLLVSLIKEAFEDWKRLQNDMTINNNLVDVLQDQKWVSVPWKRLQVGDIVRIQQDGFFPADLLFLAGTNPDGVCYIETANLDGETNLKIRKALEKTWDYLTPEKASEFKGEVQCEQPNNSLYTFTGNVIIEKQTLPLSPNQLLLRGCSLRNTEYIVGAVIFTGHETKVMMNAMNVPSKRSTLEKKLDKLILALFSTLFLMCLIGAIGSGVFVNEKYYYLALERGGENQFNPSNRILVIILTMFTLITLYSTIIPISLYVSIEMIKFIQSTQYINKDLNMFHADSNTPALARTSNLNEELGQVEYIFSDKTGTLTRNLMEFFKCSIGGEIYGTGITEIERGIAEQNGLKVEEEHKSSDAVQEKGFNFDDARLMKGAWRNEPNSDLCKEFFRCLAICHTVLPEGDESPEKIRYQAASPDEAALVTAAKNFGFFFYRRTPTTICVRESHVEKMGTILDASYEVLNVLEFNSVRKRQSVVCRYSDGRLVLYCKGADTVIYERLAVGNDNLKNVTRDHLEKFGCSGLRTLCLAYRDLHPDEYESWNEEFIQAKSSLKDREKKLDGVAELIEKDLTMVGCTAIEDKLQEGVPSCIQTLARAGIKIWVLTGDKMETAINIAYACDLINNEMKQFIISSETDAIREVEDKGDQVELARFTREEVKKELKKCLEEAQQCLQSVSPPKLALVIDGKCLMYALDPSLRVTLLNLSLNCSSVVCCRVSPLQKAQVTSLVKKGAQKITLSIGDGANDVSMIQAAHVGIGISGQEGMQAVMASDFAIAQFRFLTDLLLVHGRWSYLRICKVVTYFVYKNLTFTVTQFWFTFQTGFSGQRFYDDWFQSLYNVIFTALPVIIVGLFDKDVSAFLSKKYPELYKEGIRNVFFKWRVVITWAIFSIYQSLVFYYFITVCSISSQSSNGKVFGLWDISTMTFTCIVVTVNLRLLMTCNSITKWHYITVGGSILAWFTFILIYSSIITSHDRQENVYFVIYVVMSTFYFYLAVILVPVVALLCDFAYQGIQRWFFPYDYQIVQEIHRHEPEGRRKAALLEIQNNLTPEEARSYAMSQLPRELSTHTGFAFDSPGYESFFAAQLGVYAPQKPWDVAKRASVKSKPKTKEKK 1205
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 5284410 5297584 - Sed0018316.1 Sed04g0670 709273
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed04g0670 1205 FunFam Phospholipid-transporting ATPase 666 873 - -
Sed04g0670 1205 FunFam Phospholipid-transporting ATPase 99 268 - -
Sed04g0670 1205 NCBIfam phospholipid-translocating P-type ATPase 38 1119 IPR006539 GO:0000287(InterPro)|GO:0005524(InterPro)|GO:0015914(InterPro)|GO:0016020(InterPro)|GO:0140326(InterPro)
Sed04g0670 1205 FunFam Phospholipid-transporting ATPase 510 665 - -
Sed04g0670 1205 PANTHER PROBABLE PHOSPHOLIPID-TRANSPORTING ATPASE 10 1124 - GO:0005802(PANTHER)|GO:0005886(PANTHER)|GO:0045332(PANTHER)|GO:0048194(PANTHER)|GO:0140326(PANTHER)
Sed04g0670 1205 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 407 680 IPR023299 GO:0000166(InterPro)
Sed04g0670 1205 Gene3D - 102 268 - -
Sed04g0670 1205 PRINTS P-type cation-transporting ATPase superfamily signature 401 415 - -
Sed04g0670 1205 PRINTS P-type cation-transporting ATPase superfamily signature 833 852 - -
Sed04g0670 1205 SUPERFAMILY HAD-like 389 876 IPR036412 -
Sed04g0670 1205 SUPERFAMILY Calcium ATPase, transduction domain A 120 264 IPR008250 -
Sed04g0670 1205 SFLD p-type atpase 383 884 IPR044492 -
Sed04g0670 1205 CDD P-type_ATPase_APLT_Dnf-like 40 992 - -
Sed04g0670 1205 Pfam Phospholipid-translocating P-type ATPase C-terminal 861 1111 IPR032630 -
Sed04g0670 1205 FunFam Phospholipid-transporting ATPase IC 398 410 - -
Sed04g0670 1205 Gene3D - 511 666 IPR023299 GO:0000166(InterPro)
Sed04g0670 1205 Pfam Phospholipid-translocating ATPase N-terminal 25 89 IPR032631 -
Sed04g0670 1205 Coils Coil 748 768 - -
Sed04g0670 1205 ProSitePatterns E1-E2 ATPases phosphorylation site. 403 409 IPR018303 -
Sed04g0670 1205 NCBIfam HAD-IC family P-type ATPase 806 912 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
Sed04g0670 1205 Pfam Cation transport ATPase (P-type) 494 593 - -
Sed04g0670 1205 SUPERFAMILY Calcium ATPase, transmembrane domain M 38 1111 IPR023298 -
Sed04g0670 1205 Gene3D - 667 873 IPR023214 -
Sed04g0670 1205 SFLD C1.7: P-type atpase like 383 884 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed04g0670 Sed-Chr4:5284410 Sed06g1588 Sed-Chr6:40674301 0.00E+00 dispersed
Sed04g0670 Sed-Chr4:5284410 Sed04g0671 Sed-Chr4:5284410 0.00E+00 tandem
Sed04g0670 Sed-Chr4:5284410 Sed06g1587 Sed-Chr6:40674301 0.00E+00 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed04g0670 K14802 - csv:101207069 2160.57