Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed04g0670 | ATGCAACACAGGAGCCCCTCTTCCACGGTTCGACTCGGTCGAATCCAGCCCCAGGCCCCCGGGCATCGCACCATTTTCTGCAATGACTCAGAAGCTAATCTCATTGTCAATTTCAGGGGGAATTCGGTTTCTACCACTAAGTACAACTTTTTCACTTTCTTACCTAAAGGTTTGTTTGAACAGTTCAGGCGTGTGGCTAACCTATACTTTCTTACCATCTCAATCTTATCCACCACACCCATCAGTCCTGTGCATCCAATTACAAATGTTGTCCCTTTAAGTTTGGTTCTACTCGTCTCTCTCATTAAAGAAGCATTTGAAGACTGGAAACGACTCCAGAATGATATGACAATTAATAATAATCTTGTCGATGTGCTGCAAGATCAAAAGTGGGTGAGCGTTCCTTGGAAAAGGTTGCAGGTTGGGGACATTGTTAGGATTCAGCAAGATGGATTTTTTCCTGCAGATCTTCTTTTCCTTGCTGGTACAAATCCAGATGGTGTCTGCTACATTGAGACTGCTAACTTGGACGGGGAGACGAATTTGAAGATTAGAAAGGCCCTAGAAAAGACATGGGATTACCTGACTCCAGAGAAGGCATCTGAATTTAAAGGTGAAGTACAATGCGAGCAACCAAACAATTCACTCTACACTTTCACAGGCAATGTTATCATTGAGAAGCAAACGTTACCTCTCAGCCCAAACCAACTTTTATTGCGAGGATGCAGTCTCAGGAACACTGAATATATTGTTGGGGCTGTTATTTTTACAGGCCATGAAACAAAGGTTATGATGAATGCTATGAATGTTCCCTCCAAAAGAAGTACTCTGGAGAAAAAACTTGACAAACTCATACTTGCACTTTTTTCTACTCTCTTTCTCATGTGTTTGATTGGTGCAATTGGCAGTGGCGTGTTTGTAAACGAAAAGTACTACTACTTAGCTCTTGAAAGGGGAGGGGAAAACCAATTTAACCCTAGCAACCGAATTCTGGTTATCATTTTGACCATGTTTACCCTGATTACTTTGTACTCAACTATCATTCCTATTTCTCTTTATGTTTCTATTGAGATGATCAAATTTATTCAATCGACCCAATATATCAATAAGGATCTAAATATGTTTCATGCTGATAGCAATACCCCTGCATTGGCTAGAACTTCCAATCTGAACGAAGAACTTGGACAGGTAGAGTACATCTTTTCAGATAAAACTGGTACCCTTACCAGAAATCTAATGGAGTTCTTTAAGTGTTCAATCGGTGGAGAGATATATGGTACTGGTATCACTGAAATAGAGAGGGGAATTGCTGAGCAGAATGGCTTGAAAGTGGAAGAGGAGCACAAATCGTCTGATGCAGTACAAGAAAAGGGATTTAATTTTGATGATGCAAGGCTTATGAAAGGAGCATGGAGAAATGAGCCCAACTCTGATCTTTGTAAGGAATTTTTTAGATGCCTTGCTATTTGTCATACCGTACTCCCTGAGGGTGATGAATCCCCCGAAAAGATCAGATATCAAGCAGCATCACCTGATGAGGCTGCATTGGTAACTGCTGCTAAGAACTTTGGCTTCTTCTTTTACAGGCGAACACCTACGACAATATGTGTTCGTGAATCTCATGTTGAGAAGATGGGTACAATCCTAGATGCTTCTTATGAAGTTCTCAATGTACTTGAGTTCAATAGTGTAAGGAAGCGTCAGTCGGTGGTGTGTCGTTATTCCGATGGCAGGCTTGTCTTGTACTGCAAGGGTGCTGATACCGTAATATATGAGAGATTGGCTGTTGGAAATGATAATCTGAAGAATGTAACGAGGGATCACTTGGAGAAATTTGGATGTTCTGGTTTGAGAACCCTATGCCTTGCTTATAGAGATTTGCATCCTGACGAGTATGAAAGCTGGAATGAGGAATTCATTCAAGCTAAGTCTTCACTAAAAGATCGTGAAAAGAAATTGGATGGGGTCGCAGAACTTATTGAGAAAGACCTTACGATGGTTGGCTGTACAGCTATAGAAGATAAGCTTCAAGAAGGAGTACCAAGCTGTATACAGACACTTGCTAGAGCTGGTATCAAGATTTGGGTGCTAACAGGGGACAAGATGGAAACTGCTATTAATATAGCTTATGCTTGCGATTTAATAAACAATGAAATGAAGCAATTTATTATCAGTTCAGAAACAGATGCAATTAGAGAAGTTGAAGACAAGGGTGATCAAGTAGAACTTGCACGTTTTACTAGAGAAGAAGTAAAAAAGGAATTGAAGAAATGCCTTGAGGAAGCGCAGCAGTGTTTACAATCTGTATCTCCTCCAAAATTAGCACTTGTTATAGATGGAAAATGTTTGATGTATGCATTAGATCCAAGTCTGCGAGTTACTTTACTAAATTTGAGCTTGAATTGTAGTTCGGTTGTTTGCTGCCGGGTTTCTCCTTTGCAGAAAGCACAGGTGACAAGTCTGGTGAAGAAAGGTGCACAGAAAATAACACTTAGTATTGGAGATGGTGCTAATGATGTTAGCATGATTCAAGCAGCTCATGTGGGCATTGGAATAAGTGGGCAGGAGGGAATGCAAGCAGTGATGGCCAGTGATTTTGCTATTGCCCAGTTTCGCTTCCTCACAGATTTGCTTCTTGTGCATGGGCGATGGTCATATCTTAGAATATGCAAGGTGGTCACATACTTCGTTTACAAGAATCTTACGTTCACTGTAACCCAGTTTTGGTTCACCTTTCAAACTGGATTCTCTGGTCAAAGATTCTATGATGATTGGTTCCAGTCATTGTATAATGTCATATTTACCGCCTTACCGGTAATAATCGTGGGACTGTTTGACAAGGATGTGAGTGCATTCCTATCCAAAAAGTACCCTGAGCTCTACAAAGAGGGAATAAGAAATGTGTTCTTCAAGTGGAGAGTTGTGATAACTTGGGCTATCTTTTCCATCTACCAATCCTTAGTGTTTTATTATTTCATAACCGTTTGCAGTATCAGCAGTCAGTCGTCTAATGGCAAGGTGTTTGGTCTGTGGGATATCAGCACGATGACTTTCACATGCATCGTAGTGACTGTAAATTTGCGGCTGCTTATGACCTGCAATTCAATTACAAAGTGGCATTACATTACGGTTGGAGGAAGCATTTTAGCATGGTTCACATTTATTTTGATATATTCTAGCATAATAACATCACATGATAGGCAGGAAAATGTATATTTCGTCATATATGTCGTAATGAGTACATTCTACTTTTACCTTGCTGTCATCCTTGTCCCCGTCGTTGCGCTTCTTTGTGATTTCGCTTACCAAGGCATTCAGAGATGGTTTTTCCCCTACGATTATCAGATAGTTCAAGAAATTCATAGACACGAACCAGAAGGTAGACGTAAAGCAGCATTGCTGGAGATTCAGAACAATCTTACACCGGAAGAGGCAAGAAGCTATGCCATGTCTCAACTCCCGCGAGAGTTATCGACGCACACTGGCTTTGCTTTCGACTCACCTGGCTACGAGTCGTTTTTTGCTGCACAGCTTGGTGTTTATGCCCCACAGAAGCCATGGGATGTTGCCAAGAGAGCCAGTGTTAAGTCGAAACCAAAGACTAAGGAAAAGAAATGA | 3618 | 41.02 | MQHRSPSSTVRLGRIQPQAPGHRTIFCNDSEANLIVNFRGNSVSTTKYNFFTFLPKGLFEQFRRVANLYFLTISILSTTPISPVHPITNVVPLSLVLLVSLIKEAFEDWKRLQNDMTINNNLVDVLQDQKWVSVPWKRLQVGDIVRIQQDGFFPADLLFLAGTNPDGVCYIETANLDGETNLKIRKALEKTWDYLTPEKASEFKGEVQCEQPNNSLYTFTGNVIIEKQTLPLSPNQLLLRGCSLRNTEYIVGAVIFTGHETKVMMNAMNVPSKRSTLEKKLDKLILALFSTLFLMCLIGAIGSGVFVNEKYYYLALERGGENQFNPSNRILVIILTMFTLITLYSTIIPISLYVSIEMIKFIQSTQYINKDLNMFHADSNTPALARTSNLNEELGQVEYIFSDKTGTLTRNLMEFFKCSIGGEIYGTGITEIERGIAEQNGLKVEEEHKSSDAVQEKGFNFDDARLMKGAWRNEPNSDLCKEFFRCLAICHTVLPEGDESPEKIRYQAASPDEAALVTAAKNFGFFFYRRTPTTICVRESHVEKMGTILDASYEVLNVLEFNSVRKRQSVVCRYSDGRLVLYCKGADTVIYERLAVGNDNLKNVTRDHLEKFGCSGLRTLCLAYRDLHPDEYESWNEEFIQAKSSLKDREKKLDGVAELIEKDLTMVGCTAIEDKLQEGVPSCIQTLARAGIKIWVLTGDKMETAINIAYACDLINNEMKQFIISSETDAIREVEDKGDQVELARFTREEVKKELKKCLEEAQQCLQSVSPPKLALVIDGKCLMYALDPSLRVTLLNLSLNCSSVVCCRVSPLQKAQVTSLVKKGAQKITLSIGDGANDVSMIQAAHVGIGISGQEGMQAVMASDFAIAQFRFLTDLLLVHGRWSYLRICKVVTYFVYKNLTFTVTQFWFTFQTGFSGQRFYDDWFQSLYNVIFTALPVIIVGLFDKDVSAFLSKKYPELYKEGIRNVFFKWRVVITWAIFSIYQSLVFYYFITVCSISSQSSNGKVFGLWDISTMTFTCIVVTVNLRLLMTCNSITKWHYITVGGSILAWFTFILIYSSIITSHDRQENVYFVIYVVMSTFYFYLAVILVPVVALLCDFAYQGIQRWFFPYDYQIVQEIHRHEPEGRRKAALLEIQNNLTPEEARSYAMSQLPRELSTHTGFAFDSPGYESFFAAQLGVYAPQKPWDVAKRASVKSKPKTKEKK | 1205 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 5284410 | 5297584 | - | Sed0018316.1 | Sed04g0670 | 709273 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed04g0670 | 1205 | FunFam | Phospholipid-transporting ATPase | 666 | 873 | - | - | |
Sed04g0670 | 1205 | FunFam | Phospholipid-transporting ATPase | 99 | 268 | - | - | |
Sed04g0670 | 1205 | NCBIfam | phospholipid-translocating P-type ATPase | 38 | 1119 | IPR006539 | GO:0000287(InterPro)|GO:0005524(InterPro)|GO:0015914(InterPro)|GO:0016020(InterPro)|GO:0140326(InterPro) | |
Sed04g0670 | 1205 | FunFam | Phospholipid-transporting ATPase | 510 | 665 | - | - | |
Sed04g0670 | 1205 | PANTHER | PROBABLE PHOSPHOLIPID-TRANSPORTING ATPASE | 10 | 1124 | - | GO:0005802(PANTHER)|GO:0005886(PANTHER)|GO:0045332(PANTHER)|GO:0048194(PANTHER)|GO:0140326(PANTHER) | |
Sed04g0670 | 1205 | SUPERFAMILY | Metal cation-transporting ATPase, ATP-binding domain N | 407 | 680 | IPR023299 | GO:0000166(InterPro) | |
Sed04g0670 | 1205 | Gene3D | - | 102 | 268 | - | - | |
Sed04g0670 | 1205 | PRINTS | P-type cation-transporting ATPase superfamily signature | 401 | 415 | - | - | |
Sed04g0670 | 1205 | PRINTS | P-type cation-transporting ATPase superfamily signature | 833 | 852 | - | - | |
Sed04g0670 | 1205 | SUPERFAMILY | HAD-like | 389 | 876 | IPR036412 | - | |
Sed04g0670 | 1205 | SUPERFAMILY | Calcium ATPase, transduction domain A | 120 | 264 | IPR008250 | - | |
Sed04g0670 | 1205 | SFLD | p-type atpase | 383 | 884 | IPR044492 | - | |
Sed04g0670 | 1205 | CDD | P-type_ATPase_APLT_Dnf-like | 40 | 992 | - | - | |
Sed04g0670 | 1205 | Pfam | Phospholipid-translocating P-type ATPase C-terminal | 861 | 1111 | IPR032630 | - | |
Sed04g0670 | 1205 | FunFam | Phospholipid-transporting ATPase IC | 398 | 410 | - | - | |
Sed04g0670 | 1205 | Gene3D | - | 511 | 666 | IPR023299 | GO:0000166(InterPro) | |
Sed04g0670 | 1205 | Pfam | Phospholipid-translocating ATPase N-terminal | 25 | 89 | IPR032631 | - | |
Sed04g0670 | 1205 | Coils | Coil | 748 | 768 | - | - | |
Sed04g0670 | 1205 | ProSitePatterns | E1-E2 ATPases phosphorylation site. | 403 | 409 | IPR018303 | - | |
Sed04g0670 | 1205 | NCBIfam | HAD-IC family P-type ATPase | 806 | 912 | IPR001757 | GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro) | |
Sed04g0670 | 1205 | Pfam | Cation transport ATPase (P-type) | 494 | 593 | - | - | |
Sed04g0670 | 1205 | SUPERFAMILY | Calcium ATPase, transmembrane domain M | 38 | 1111 | IPR023298 | - | |
Sed04g0670 | 1205 | Gene3D | - | 667 | 873 | IPR023214 | - | |
Sed04g0670 | 1205 | SFLD | C1.7: P-type atpase like | 383 | 884 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed04g0670 | Sed-Chr4:5284410 | Sed06g1588 | Sed-Chr6:40674301 | 0.00E+00 | dispersed | |
Sed04g0670 | Sed-Chr4:5284410 | Sed04g0671 | Sed-Chr4:5284410 | 0.00E+00 | tandem | |
Sed04g0670 | Sed-Chr4:5284410 | Sed06g1587 | Sed-Chr6:40674301 | 0.00E+00 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed04g0670 | K14802 | - | csv:101207069 | 2160.57 |