Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed04g0671 | ATGTCACTGATGCAGATTCAGCAAGATGGATTTTTTCCTGCAGATCTTCTTTTCCTTGCTGGTACAAATCCAGATGGTGTCTGCTACATTGAGACTGCTAACTTGGACGGGGAGACGAATTTGAAGATTAGAAAGGCCCTAGAAAAGACATGGGATTACCTGACTCCAGAGAAGGCATCTGAATTTAAAGGTGAAGTACAATGCGAGCAACCAAACAATTCACTCTACACTTTCACAGGCAATGTTATCATTGAGAAGCAAACGTTACCTCTCAGCCCAAACCAACTTTTATTGCGAGGATGCAGTCTCAGGAACACTGAATATATTGTTGGGGCTGTTATTTTTACAGGCCATGAAACAAAGGTTATGATGAATGCTATGAATGTTCCCTCCAAAAGAAGTACTCTGGAGAAAAAACTTGACAAACTCATACTTGCACTTTTTTCTACTCTCTTTCTCATGTGTTTGATTGGTGCAATTGGCAGTGGCGTGTTTGTAAACGAAAAGTACTACTACTTAGCTCTTGAAAGGGGAGGGGAAAACCAATTTAACCCTAGCAACCGAATTCTGGTTATCATTTTGACCATGTTTACCCTGATTACTTTGTACTCAACTATCATTCCTATTTCTCTTTATGTTTCTATTGAGATGATCAAATTTATTCAATCGACCCAATATATCAATAAGGATCTAAATATGTTTCATGCTGATAGCAATACCCCTGCATTGGCTAGAACTTCCAATCTGAACGAAGAACTTGGACAGGTAGAGTACATCTTTTCAGATAAAACTGGTACCCTTACCAGAAATCTAATGGAGTTCTTTAAGTGTTCAATCGGTGGAGAGATATATGGTACTGGTATCACTGAAATAGAGAGGGGAATTGCTGAGCAGAATGGCTTGAAAGTGGAAGAGGAGCACAAATCGTCTGATGCAGTACAAGAAAAGGGATTTAATTTTGATGATGCAAGGCTTATGAAAGGAGCATGGAGAAATGAGCCCAACTCTGATCTTTGTAAGGAATTTTTTAGATGCCTTGCTATTTGTCATACCGTACTCCCTGAGGGTGATGAATCCCCCGAAAAGATCAGATATCAAGCAGCATCACCTGATGAGGCTGCATTGGTAACTGCTGCTAAGAACTTTGGCTTCTTCTTTTACAGGCGAACACCTACGACAATATGTGTTCGTGAATCTCATGTTGAGAAGATGGGTACAATCCTAGATGCTTCTTATGAAGTTCTCAATGTACTTGAGTTCAATAGTGTAAGGAAGCGTCAGTCGGTGGTGTGTCGTTATTCCGATGGCAGGCTTGTCTTGTACTGCAAGGGTGCTGATACCGTAATATATGAGAGATTGGCTGTTGGAAATGATAATCTGAAGAATGTAACGAGGGATCACTTGGAGAAATTTGGATGTTCTGGTTTGAGAACCCTATGCCTTGCTTATAGAGATTTGCATCCTGACGAGTATGAAAGCTGGAATGAGGAATTCATTCAAGCTAAGTCTTCACTAAAAGATCGTGAAAAGAAATTGGATGGGGTCGCAGAACTTATTGAGAAAGACCTTACGATGGTTGGCTGTACAGCTATAGAAGATAAGCTTCAAGAAGGAGTACCAAGCTGTATACAGACACTTGCTAGAGCTGGTATCAAGATTTGGGTGCTAACAGGGGACAAGATGGAAACTGCTATTAATATAGCTTATGCTTGCGATTTAATAAACAATGAAATGAAGCAATTTATTATCAGTTCAGAAACAGATGCAATTAGAGAAGTTGAAGACAAGGGTGATCAAGTAGAACTTGCACGTTTTACTAGAGAAGAAGTAAAAAAGGAATTGAAGAAATGCCTTGAGGAAGCGCAGCAGTGTTTACAATCTGTATCTCCTCCAAAATTAGCACTTGTTATAGATGGAAAATGTTTGATGTATGCATTAGATCCAAGTCTGCGAGTTACTTTACTAAATTTGAGCTTGAATTGTAGTTCGGTTGTTTGCTGCCGGGTTTCTCCTTTGCAGAAAGCACAGGTGACAAGTCTGGTGAAGAAAGGTGCACAGAAAATAACACTTAGTATTGGAGATGGTGCTAATGATGTTAGCATGATTCAAGCAGCTCATGTGGGCATTGGAATAAGTGGGCAGGAGGGAATGCAAGCAGTGATGGCCAGTGATTTTGCTATTGCCCAGTTTCGCTTCCTCACAGATTTGCTTCTTGTGCATGGGCGATGGTCATATCTTAGAATATGCAAGGTGGTCACATACTTCGTTTACAAGAATCTTACGTTCACTGTAACCCAGTTTTGGTTCACCTTTCAAACTGGATTCTCTGGTCAAAGATTCTATGATGATTGGTTCCAGTCATTGTATAATGTCATATTTACCGCCTTACCGGTAATAATCGTGGGACTGTTTGACAAGGATGTGAGTGCATTCCTATCCAAAAAGTACCCTGAGCTCTACAAAGAGGGAATAAGAAATGTGTTCTTCAAGTGGAGAGTTGTGATAACTTGGGCTATCTTTTCCATCTACCAATCCTTAGTGTTTTATTATTTCATAACCGTTTGCAGTATCAGCAGTCAGTCGTCTAATGGCAAGGTGTTTGGTCTGTGGGATATCAGCACGATGACTTTCACATGCATCGTAGTGACTGTAAATTTGCGGCTGCTTATGACCTGCAATTCAATTACAAAGTGGCATTACATTACGGTTGGAGGAAGCATTTTAGCATGGTTCACATTTATTTTGATATATTCTAGCATAATAACATCACATGATAGGCAGGAAAATGTATATTTCGTCATATATGTCGTAATGAGTACATTCTACTTTTACCTTGCTGTCATCCTTGTCCCCGTCGTTGCGCTTCTTTGTGATTTCGCTTACCAAGGCATTCAGAGATGGTTTTTCCCCTACGATTATCAGATAGTTCAAGAAATTCATAGACACGAACCAGAAGGTAGACGTAAAGCAGCATTGCTGGAGATTCAGAACAATCTTACACCGGAAGAGGCAAGAAGCTATGCCATGTCTCAACTCCCGCGAGAGTTATCGACGCACACTGGCTTTGCTTTCGACTCACCTGGCTACGAGTCGTTTTTTGCTGCACAGCTTGGTGTTTATGCCCCACAGAAGCCATGGGATGTTGCCAAGAGAGCCAGTGTTAAGTCGAAACCAAAGACTAAGGAAAAGAAATGA | 3195 | 40.59 | MSLMQIQQDGFFPADLLFLAGTNPDGVCYIETANLDGETNLKIRKALEKTWDYLTPEKASEFKGEVQCEQPNNSLYTFTGNVIIEKQTLPLSPNQLLLRGCSLRNTEYIVGAVIFTGHETKVMMNAMNVPSKRSTLEKKLDKLILALFSTLFLMCLIGAIGSGVFVNEKYYYLALERGGENQFNPSNRILVIILTMFTLITLYSTIIPISLYVSIEMIKFIQSTQYINKDLNMFHADSNTPALARTSNLNEELGQVEYIFSDKTGTLTRNLMEFFKCSIGGEIYGTGITEIERGIAEQNGLKVEEEHKSSDAVQEKGFNFDDARLMKGAWRNEPNSDLCKEFFRCLAICHTVLPEGDESPEKIRYQAASPDEAALVTAAKNFGFFFYRRTPTTICVRESHVEKMGTILDASYEVLNVLEFNSVRKRQSVVCRYSDGRLVLYCKGADTVIYERLAVGNDNLKNVTRDHLEKFGCSGLRTLCLAYRDLHPDEYESWNEEFIQAKSSLKDREKKLDGVAELIEKDLTMVGCTAIEDKLQEGVPSCIQTLARAGIKIWVLTGDKMETAINIAYACDLINNEMKQFIISSETDAIREVEDKGDQVELARFTREEVKKELKKCLEEAQQCLQSVSPPKLALVIDGKCLMYALDPSLRVTLLNLSLNCSSVVCCRVSPLQKAQVTSLVKKGAQKITLSIGDGANDVSMIQAAHVGIGISGQEGMQAVMASDFAIAQFRFLTDLLLVHGRWSYLRICKVVTYFVYKNLTFTVTQFWFTFQTGFSGQRFYDDWFQSLYNVIFTALPVIIVGLFDKDVSAFLSKKYPELYKEGIRNVFFKWRVVITWAIFSIYQSLVFYYFITVCSISSQSSNGKVFGLWDISTMTFTCIVVTVNLRLLMTCNSITKWHYITVGGSILAWFTFILIYSSIITSHDRQENVYFVIYVVMSTFYFYLAVILVPVVALLCDFAYQGIQRWFFPYDYQIVQEIHRHEPEGRRKAALLEIQNNLTPEEARSYAMSQLPRELSTHTGFAFDSPGYESFFAAQLGVYAPQKPWDVAKRASVKSKPKTKEKK | 1064 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 5284410 | 5294983 | - | Sed0018316.2 | Sed04g0671 | 709274 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed04g0671 | 1064 | SFLD | p-type atpase | 242 | 743 | IPR044492 | - | |
Sed04g0671 | 1064 | PRINTS | P-type cation-transporting ATPase superfamily signature | 692 | 711 | - | - | |
Sed04g0671 | 1064 | PRINTS | P-type cation-transporting ATPase superfamily signature | 260 | 274 | - | - | |
Sed04g0671 | 1064 | PANTHER | PROBABLE PHOSPHOLIPID-TRANSPORTING ATPASE | 3 | 983 | - | GO:0005802(PANTHER)|GO:0005886(PANTHER)|GO:0045332(PANTHER)|GO:0048194(PANTHER)|GO:0140326(PANTHER) | |
Sed04g0671 | 1064 | Gene3D | - | 370 | 526 | IPR023299 | GO:0000166(InterPro) | |
Sed04g0671 | 1064 | SUPERFAMILY | HAD-like | 248 | 735 | IPR036412 | - | |
Sed04g0671 | 1064 | ProSitePatterns | E1-E2 ATPases phosphorylation site. | 262 | 268 | IPR018303 | - | |
Sed04g0671 | 1064 | FunFam | Phospholipid-transporting ATPase | 369 | 524 | - | - | |
Sed04g0671 | 1064 | NCBIfam | phospholipid-translocating P-type ATPase | 3 | 978 | IPR006539 | GO:0000287(InterPro)|GO:0005524(InterPro)|GO:0015914(InterPro)|GO:0016020(InterPro)|GO:0140326(InterPro) | |
Sed04g0671 | 1064 | CDD | P-type_ATPase_APLT_Dnf-like | 3 | 851 | - | - | |
Sed04g0671 | 1064 | FunFam | Phospholipid-transporting ATPase | 525 | 732 | - | - | |
Sed04g0671 | 1064 | Pfam | Phospholipid-translocating P-type ATPase C-terminal | 720 | 970 | IPR032630 | - | |
Sed04g0671 | 1064 | Pfam | Cation transport ATPase (P-type) | 353 | 452 | - | - | |
Sed04g0671 | 1064 | FunFam | Phospholipid-transporting ATPase IC | 257 | 269 | - | - | |
Sed04g0671 | 1064 | SUPERFAMILY | Calcium ATPase, transduction domain A | 4 | 123 | IPR008250 | - | |
Sed04g0671 | 1064 | SUPERFAMILY | Calcium ATPase, transmembrane domain M | 51 | 970 | IPR023298 | - | |
Sed04g0671 | 1064 | Gene3D | - | 527 | 732 | IPR023214 | - | |
Sed04g0671 | 1064 | Coils | Coil | 607 | 627 | - | - | |
Sed04g0671 | 1064 | SFLD | Haloacid Dehalogenase | 242 | 743 | - | - | |
Sed04g0671 | 1064 | NCBIfam | HAD-IC family P-type ATPase | 665 | 771 | IPR001757 | GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro) | |
Sed04g0671 | 1064 | SUPERFAMILY | Metal cation-transporting ATPase, ATP-binding domain N | 266 | 539 | IPR023299 | GO:0000166(InterPro) | |
Sed04g0671 | 1064 | Gene3D | - | 3 | 127 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed04g0671 | Sed-Chr4:5284410 | Sed06g1587 | Sed-Chr6:40674301 | 0.00E+00 | dispersed | |
Sed04g0670 | Sed-Chr4:5284410 | Sed04g0671 | Sed-Chr4:5284410 | 0.00E+00 | tandem | |
Sed04g0671 | Sed-Chr4:5284410 | Sed04g0672 | Sed-Chr4:5284410 | 0.00E+00 | tandem |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed04g0671 | K14802 | - | csv:101207069 | 1904.41 |