Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed04g0671 ATGTCACTGATGCAGATTCAGCAAGATGGATTTTTTCCTGCAGATCTTCTTTTCCTTGCTGGTACAAATCCAGATGGTGTCTGCTACATTGAGACTGCTAACTTGGACGGGGAGACGAATTTGAAGATTAGAAAGGCCCTAGAAAAGACATGGGATTACCTGACTCCAGAGAAGGCATCTGAATTTAAAGGTGAAGTACAATGCGAGCAACCAAACAATTCACTCTACACTTTCACAGGCAATGTTATCATTGAGAAGCAAACGTTACCTCTCAGCCCAAACCAACTTTTATTGCGAGGATGCAGTCTCAGGAACACTGAATATATTGTTGGGGCTGTTATTTTTACAGGCCATGAAACAAAGGTTATGATGAATGCTATGAATGTTCCCTCCAAAAGAAGTACTCTGGAGAAAAAACTTGACAAACTCATACTTGCACTTTTTTCTACTCTCTTTCTCATGTGTTTGATTGGTGCAATTGGCAGTGGCGTGTTTGTAAACGAAAAGTACTACTACTTAGCTCTTGAAAGGGGAGGGGAAAACCAATTTAACCCTAGCAACCGAATTCTGGTTATCATTTTGACCATGTTTACCCTGATTACTTTGTACTCAACTATCATTCCTATTTCTCTTTATGTTTCTATTGAGATGATCAAATTTATTCAATCGACCCAATATATCAATAAGGATCTAAATATGTTTCATGCTGATAGCAATACCCCTGCATTGGCTAGAACTTCCAATCTGAACGAAGAACTTGGACAGGTAGAGTACATCTTTTCAGATAAAACTGGTACCCTTACCAGAAATCTAATGGAGTTCTTTAAGTGTTCAATCGGTGGAGAGATATATGGTACTGGTATCACTGAAATAGAGAGGGGAATTGCTGAGCAGAATGGCTTGAAAGTGGAAGAGGAGCACAAATCGTCTGATGCAGTACAAGAAAAGGGATTTAATTTTGATGATGCAAGGCTTATGAAAGGAGCATGGAGAAATGAGCCCAACTCTGATCTTTGTAAGGAATTTTTTAGATGCCTTGCTATTTGTCATACCGTACTCCCTGAGGGTGATGAATCCCCCGAAAAGATCAGATATCAAGCAGCATCACCTGATGAGGCTGCATTGGTAACTGCTGCTAAGAACTTTGGCTTCTTCTTTTACAGGCGAACACCTACGACAATATGTGTTCGTGAATCTCATGTTGAGAAGATGGGTACAATCCTAGATGCTTCTTATGAAGTTCTCAATGTACTTGAGTTCAATAGTGTAAGGAAGCGTCAGTCGGTGGTGTGTCGTTATTCCGATGGCAGGCTTGTCTTGTACTGCAAGGGTGCTGATACCGTAATATATGAGAGATTGGCTGTTGGAAATGATAATCTGAAGAATGTAACGAGGGATCACTTGGAGAAATTTGGATGTTCTGGTTTGAGAACCCTATGCCTTGCTTATAGAGATTTGCATCCTGACGAGTATGAAAGCTGGAATGAGGAATTCATTCAAGCTAAGTCTTCACTAAAAGATCGTGAAAAGAAATTGGATGGGGTCGCAGAACTTATTGAGAAAGACCTTACGATGGTTGGCTGTACAGCTATAGAAGATAAGCTTCAAGAAGGAGTACCAAGCTGTATACAGACACTTGCTAGAGCTGGTATCAAGATTTGGGTGCTAACAGGGGACAAGATGGAAACTGCTATTAATATAGCTTATGCTTGCGATTTAATAAACAATGAAATGAAGCAATTTATTATCAGTTCAGAAACAGATGCAATTAGAGAAGTTGAAGACAAGGGTGATCAAGTAGAACTTGCACGTTTTACTAGAGAAGAAGTAAAAAAGGAATTGAAGAAATGCCTTGAGGAAGCGCAGCAGTGTTTACAATCTGTATCTCCTCCAAAATTAGCACTTGTTATAGATGGAAAATGTTTGATGTATGCATTAGATCCAAGTCTGCGAGTTACTTTACTAAATTTGAGCTTGAATTGTAGTTCGGTTGTTTGCTGCCGGGTTTCTCCTTTGCAGAAAGCACAGGTGACAAGTCTGGTGAAGAAAGGTGCACAGAAAATAACACTTAGTATTGGAGATGGTGCTAATGATGTTAGCATGATTCAAGCAGCTCATGTGGGCATTGGAATAAGTGGGCAGGAGGGAATGCAAGCAGTGATGGCCAGTGATTTTGCTATTGCCCAGTTTCGCTTCCTCACAGATTTGCTTCTTGTGCATGGGCGATGGTCATATCTTAGAATATGCAAGGTGGTCACATACTTCGTTTACAAGAATCTTACGTTCACTGTAACCCAGTTTTGGTTCACCTTTCAAACTGGATTCTCTGGTCAAAGATTCTATGATGATTGGTTCCAGTCATTGTATAATGTCATATTTACCGCCTTACCGGTAATAATCGTGGGACTGTTTGACAAGGATGTGAGTGCATTCCTATCCAAAAAGTACCCTGAGCTCTACAAAGAGGGAATAAGAAATGTGTTCTTCAAGTGGAGAGTTGTGATAACTTGGGCTATCTTTTCCATCTACCAATCCTTAGTGTTTTATTATTTCATAACCGTTTGCAGTATCAGCAGTCAGTCGTCTAATGGCAAGGTGTTTGGTCTGTGGGATATCAGCACGATGACTTTCACATGCATCGTAGTGACTGTAAATTTGCGGCTGCTTATGACCTGCAATTCAATTACAAAGTGGCATTACATTACGGTTGGAGGAAGCATTTTAGCATGGTTCACATTTATTTTGATATATTCTAGCATAATAACATCACATGATAGGCAGGAAAATGTATATTTCGTCATATATGTCGTAATGAGTACATTCTACTTTTACCTTGCTGTCATCCTTGTCCCCGTCGTTGCGCTTCTTTGTGATTTCGCTTACCAAGGCATTCAGAGATGGTTTTTCCCCTACGATTATCAGATAGTTCAAGAAATTCATAGACACGAACCAGAAGGTAGACGTAAAGCAGCATTGCTGGAGATTCAGAACAATCTTACACCGGAAGAGGCAAGAAGCTATGCCATGTCTCAACTCCCGCGAGAGTTATCGACGCACACTGGCTTTGCTTTCGACTCACCTGGCTACGAGTCGTTTTTTGCTGCACAGCTTGGTGTTTATGCCCCACAGAAGCCATGGGATGTTGCCAAGAGAGCCAGTGTTAAGTCGAAACCAAAGACTAAGGAAAAGAAATGA 3195 40.59 MSLMQIQQDGFFPADLLFLAGTNPDGVCYIETANLDGETNLKIRKALEKTWDYLTPEKASEFKGEVQCEQPNNSLYTFTGNVIIEKQTLPLSPNQLLLRGCSLRNTEYIVGAVIFTGHETKVMMNAMNVPSKRSTLEKKLDKLILALFSTLFLMCLIGAIGSGVFVNEKYYYLALERGGENQFNPSNRILVIILTMFTLITLYSTIIPISLYVSIEMIKFIQSTQYINKDLNMFHADSNTPALARTSNLNEELGQVEYIFSDKTGTLTRNLMEFFKCSIGGEIYGTGITEIERGIAEQNGLKVEEEHKSSDAVQEKGFNFDDARLMKGAWRNEPNSDLCKEFFRCLAICHTVLPEGDESPEKIRYQAASPDEAALVTAAKNFGFFFYRRTPTTICVRESHVEKMGTILDASYEVLNVLEFNSVRKRQSVVCRYSDGRLVLYCKGADTVIYERLAVGNDNLKNVTRDHLEKFGCSGLRTLCLAYRDLHPDEYESWNEEFIQAKSSLKDREKKLDGVAELIEKDLTMVGCTAIEDKLQEGVPSCIQTLARAGIKIWVLTGDKMETAINIAYACDLINNEMKQFIISSETDAIREVEDKGDQVELARFTREEVKKELKKCLEEAQQCLQSVSPPKLALVIDGKCLMYALDPSLRVTLLNLSLNCSSVVCCRVSPLQKAQVTSLVKKGAQKITLSIGDGANDVSMIQAAHVGIGISGQEGMQAVMASDFAIAQFRFLTDLLLVHGRWSYLRICKVVTYFVYKNLTFTVTQFWFTFQTGFSGQRFYDDWFQSLYNVIFTALPVIIVGLFDKDVSAFLSKKYPELYKEGIRNVFFKWRVVITWAIFSIYQSLVFYYFITVCSISSQSSNGKVFGLWDISTMTFTCIVVTVNLRLLMTCNSITKWHYITVGGSILAWFTFILIYSSIITSHDRQENVYFVIYVVMSTFYFYLAVILVPVVALLCDFAYQGIQRWFFPYDYQIVQEIHRHEPEGRRKAALLEIQNNLTPEEARSYAMSQLPRELSTHTGFAFDSPGYESFFAAQLGVYAPQKPWDVAKRASVKSKPKTKEKK 1064
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 5284410 5294983 - Sed0018316.2 Sed04g0671 709274
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed04g0671 1064 SFLD p-type atpase 242 743 IPR044492 -
Sed04g0671 1064 PRINTS P-type cation-transporting ATPase superfamily signature 692 711 - -
Sed04g0671 1064 PRINTS P-type cation-transporting ATPase superfamily signature 260 274 - -
Sed04g0671 1064 PANTHER PROBABLE PHOSPHOLIPID-TRANSPORTING ATPASE 3 983 - GO:0005802(PANTHER)|GO:0005886(PANTHER)|GO:0045332(PANTHER)|GO:0048194(PANTHER)|GO:0140326(PANTHER)
Sed04g0671 1064 Gene3D - 370 526 IPR023299 GO:0000166(InterPro)
Sed04g0671 1064 SUPERFAMILY HAD-like 248 735 IPR036412 -
Sed04g0671 1064 ProSitePatterns E1-E2 ATPases phosphorylation site. 262 268 IPR018303 -
Sed04g0671 1064 FunFam Phospholipid-transporting ATPase 369 524 - -
Sed04g0671 1064 NCBIfam phospholipid-translocating P-type ATPase 3 978 IPR006539 GO:0000287(InterPro)|GO:0005524(InterPro)|GO:0015914(InterPro)|GO:0016020(InterPro)|GO:0140326(InterPro)
Sed04g0671 1064 CDD P-type_ATPase_APLT_Dnf-like 3 851 - -
Sed04g0671 1064 FunFam Phospholipid-transporting ATPase 525 732 - -
Sed04g0671 1064 Pfam Phospholipid-translocating P-type ATPase C-terminal 720 970 IPR032630 -
Sed04g0671 1064 Pfam Cation transport ATPase (P-type) 353 452 - -
Sed04g0671 1064 FunFam Phospholipid-transporting ATPase IC 257 269 - -
Sed04g0671 1064 SUPERFAMILY Calcium ATPase, transduction domain A 4 123 IPR008250 -
Sed04g0671 1064 SUPERFAMILY Calcium ATPase, transmembrane domain M 51 970 IPR023298 -
Sed04g0671 1064 Gene3D - 527 732 IPR023214 -
Sed04g0671 1064 Coils Coil 607 627 - -
Sed04g0671 1064 SFLD Haloacid Dehalogenase 242 743 - -
Sed04g0671 1064 NCBIfam HAD-IC family P-type ATPase 665 771 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
Sed04g0671 1064 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 266 539 IPR023299 GO:0000166(InterPro)
Sed04g0671 1064 Gene3D - 3 127 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed04g0671 Sed-Chr4:5284410 Sed06g1587 Sed-Chr6:40674301 0.00E+00 dispersed
Sed04g0670 Sed-Chr4:5284410 Sed04g0671 Sed-Chr4:5284410 0.00E+00 tandem
Sed04g0671 Sed-Chr4:5284410 Sed04g0672 Sed-Chr4:5284410 0.00E+00 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed04g0671 K14802 - csv:101207069 1904.41