Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed04g0672 ATGATGAATGCTATGAATGTTCCCTCCAAAAGAAGTACTCTGGAGAAAAAACTTGACAAACTCATACTTGCACTTTTTTCTACTCTCTTTCTCATGTGTTTGATTGGTGCAATTGGCAGTGGCGTGTTTGTAAACGAAAAGTACTACTACTTAGCTCTTGAAAGGGGAGGGGAAAACCAATTTAACCCTAGCAACCGAATTCTGGTTATCATTTTGACCATGTTTACCCTGATTACTTTGTACTCAACTATCATTCCTATTTCTCTTTATGTTTCTATTGAGATGATCAAATTTATTCAATCGACCCAATATATCAATAAGGATCTAAATATGTTTCATGCTGATAGCAATACCCCTGCATTGGCTAGAACTTCCAATCTGAACGAAGAACTTGGACAGGTAGAGTACATCTTTTCAGATAAAACTGGTACCCTTACCAGAAATCTAATGGAGTTCTTTAAGTGTTCAATCGGTGGAGAGATATATGGTACTGGTATCACTGAAATAGAGAGGGGAATTGCTGAGCAGAATGGCTTGAAAGTGGAAGAGGAGCACAAATCGTCTGATGCAGTACAAGAAAAGGGATTTAATTTTGATGATGCAAGGCTTATGAAAGGAGCATGGAGAAATGAGCCCAACTCTGATCTTTGTAAGGAATTTTTTAGATGCCTTGCTATTTGTCATACCGTACTCCCTGAGGGTGATGAATCCCCCGAAAAGATCAGATATCAAGCAGCATCACCTGATGAGGCTGCATTGGTAACTGCTGCTAAGAACTTTGGCTTCTTCTTTTACAGGCGAACACCTACGACAATATGTGTTCGTGAATCTCATGTTGAGAAGATGGGTACAATCCTAGATGCTTCTTATGAAGTTCTCAATGTACTTGAGTTCAATAGTGTAAGGAAGCGTCAGTCGGTGGTGTGTCGTTATTCCGATGGCAGGCTTGTCTTGTACTGCAAGGGTGCTGATACCGTAATATATGAGAGATTGGCTGTTGGAAATGATAATCTGAAGAATGTAACGAGGGATCACTTGGAGAAATTTGGATGTTCTGGTTTGAGAACCCTATGCCTTGCTTATAGAGATTTGCATCCTGACGAGTATGAAAGCTGGAATGAGGAATTCATTCAAGCTAAGTCTTCACTAAAAGATCGTGAAAAGAAATTGGATGGGGTCGCAGAACTTATTGAGAAAGACCTTACGATGGTTGGCTGTACAGCTATAGAAGATAAGCTTCAAGAAGGAGTACCAAGCTGTATACAGACACTTGCTAGAGCTGGTATCAAGATTTGGGTGCTAACAGGGGACAAGATGGAAACTGCTATTAATATAGCTTATGCTTGCGATTTAATAAACAATGAAATGAAGCAATTTATTATCAGTTCAGAAACAGATGCAATTAGAGAAGTTGAAGACAAGGGTGATCAAGTAGAACTTGCACGTTTTACTAGAGAAGAAGTAAAAAAGGAATTGAAGAAATGCCTTGAGGAAGCGCAGCAGTGTTTACAATCTGTATCTCCTCCAAAATTAGCACTTGTTATAGATGGAAAATGTTTGATGTATGCATTAGATCCAAGTCTGCGAGTTACTTTACTAAATTTGAGCTTGAATTGTAGTTCGGTTGTTTGCTGCCGGGTTTCTCCTTTGCAGAAAGCACAGGTGACAAGTCTGGTGAAGAAAGGTGCACAGAAAATAACACTTAGTATTGGAGATGGTGCTAATGATGTTAGCATGATTCAAGCAGCTCATGTGGGCATTGGAATAAGTGGGCAGGAGGGAATGCAAGCAGTGATGGCCAGTGATTTTGCTATTGCCCAGTTTCGCTTCCTCACAGATTTGCTTCTTGTGCATGGGCGATGGTCATATCTTAGAATATGCAAGGTGGTCACATACTTCGTTTACAAGAATCTTACGTTCACTGTAACCCAGTTTTGGTTCACCTTTCAAACTGGATTCTCTGGTCAAAGATTCTATGATGATTGGTTCCAGTCATTGTATAATGTCATATTTACCGCCTTACCGGTAATAATCGTGGGACTGTTTGACAAGGATGTGAGTGCATTCCTATCCAAAAAGTACCCTGAGCTCTACAAAGAGGGAATAAGAAATGTGTTCTTCAAGTGGAGAGTTGTGATAACTTGGGCTATCTTTTCCATCTACCAATCCTTAGTGTTTTATTATTTCATAACCGTTTGCAGTATCAGCAGTCAGTCGTCTAATGGCAAGGTGTTTGGTCTGTGGGATATCAGCACGATGACTTTCACATGCATCGTAGTGACTGTAAATTTGCGGCTGCTTATGACCTGCAATTCAATTACAAAGTGGCATTACATTACGGTTGGAGGAAGCATTTTAGCATGGTTCACATTTATTTTGATATATTCTAGCATAATAACATCACATGATAGGCAGGAAAATGTATATTTCGTCATATATGTCGTAATGAGTACATTCTACTTTTACCTTGCTGTCATCCTTGTCCCCGTCGTTGCGCTTCTTTGTGATTTCGCTTACCAAGGCATTCAGAGATGGTTTTTCCCCTACGATTATCAGATAGTTCAAGAAATTCATAGACACGAACCAGAAGGTAGACGTAAAGCAGCATTGCTGGAGATTCAGAACAATCTTACACCGGAAGAGGCAAGAAGCTATGCCATGTCTCAACTCCCGCGAGAGTTATCGACGCACACTGGCTTTGCTTTCGACTCACCTGGCTACGAGTCGTTTTTTGCTGCACAGCTTGGTGTTTATGCCCCACAGAAGCCATGGGATGTTGCCAAGAGAGCCAGTGTTAAGTCGAAACCAAAGACTAAGGAAAAGAAATGA 2829 40.44 MMNAMNVPSKRSTLEKKLDKLILALFSTLFLMCLIGAIGSGVFVNEKYYYLALERGGENQFNPSNRILVIILTMFTLITLYSTIIPISLYVSIEMIKFIQSTQYINKDLNMFHADSNTPALARTSNLNEELGQVEYIFSDKTGTLTRNLMEFFKCSIGGEIYGTGITEIERGIAEQNGLKVEEEHKSSDAVQEKGFNFDDARLMKGAWRNEPNSDLCKEFFRCLAICHTVLPEGDESPEKIRYQAASPDEAALVTAAKNFGFFFYRRTPTTICVRESHVEKMGTILDASYEVLNVLEFNSVRKRQSVVCRYSDGRLVLYCKGADTVIYERLAVGNDNLKNVTRDHLEKFGCSGLRTLCLAYRDLHPDEYESWNEEFIQAKSSLKDREKKLDGVAELIEKDLTMVGCTAIEDKLQEGVPSCIQTLARAGIKIWVLTGDKMETAINIAYACDLINNEMKQFIISSETDAIREVEDKGDQVELARFTREEVKKELKKCLEEAQQCLQSVSPPKLALVIDGKCLMYALDPSLRVTLLNLSLNCSSVVCCRVSPLQKAQVTSLVKKGAQKITLSIGDGANDVSMIQAAHVGIGISGQEGMQAVMASDFAIAQFRFLTDLLLVHGRWSYLRICKVVTYFVYKNLTFTVTQFWFTFQTGFSGQRFYDDWFQSLYNVIFTALPVIIVGLFDKDVSAFLSKKYPELYKEGIRNVFFKWRVVITWAIFSIYQSLVFYYFITVCSISSQSSNGKVFGLWDISTMTFTCIVVTVNLRLLMTCNSITKWHYITVGGSILAWFTFILIYSSIITSHDRQENVYFVIYVVMSTFYFYLAVILVPVVALLCDFAYQGIQRWFFPYDYQIVQEIHRHEPEGRRKAALLEIQNNLTPEEARSYAMSQLPRELSTHTGFAFDSPGYESFFAAQLGVYAPQKPWDVAKRASVKSKPKTKEKK 942
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 5284410 5291731 - Sed0018316.3 Sed04g0672 709275
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed04g0672 942 SFLD p-type atpase 120 621 IPR044492 -
Sed04g0672 942 FunFam Phospholipid-transporting ATPase 247 402 - -
Sed04g0672 942 Pfam Phospholipid-translocating P-type ATPase C-terminal 598 848 IPR032630 -
Sed04g0672 942 Coils Coil 485 505 - -
Sed04g0672 942 Pfam Cation transport ATPase (P-type) 231 330 - -
Sed04g0672 942 SUPERFAMILY Calcium ATPase, transmembrane domain M 7 848 IPR023298 -
Sed04g0672 942 ProSitePatterns E1-E2 ATPases phosphorylation site. 140 146 IPR018303 -
Sed04g0672 942 Gene3D - 405 610 IPR023214 -
Sed04g0672 942 SFLD Haloacid Dehalogenase 120 621 - -
Sed04g0672 942 NCBIfam phospholipid-translocating P-type ATPase 1 856 IPR006539 GO:0000287(InterPro)|GO:0005524(InterPro)|GO:0015914(InterPro)|GO:0016020(InterPro)|GO:0140326(InterPro)
Sed04g0672 942 SUPERFAMILY HAD-like 126 613 IPR036412 -
Sed04g0672 942 PRINTS P-type cation-transporting ATPase superfamily signature 138 152 - -
Sed04g0672 942 PRINTS P-type cation-transporting ATPase superfamily signature 570 589 - -
Sed04g0672 942 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 144 417 IPR023299 GO:0000166(InterPro)
Sed04g0672 942 PANTHER PROBABLE PHOSPHOLIPID-TRANSPORTING ATPASE 1 861 - GO:0005802(PANTHER)|GO:0005886(PANTHER)|GO:0045332(PANTHER)|GO:0048194(PANTHER)|GO:0140326(PANTHER)
Sed04g0672 942 FunFam Phospholipid-transporting ATPase IC 135 147 - -
Sed04g0672 942 FunFam Phospholipid-transporting ATPase 403 610 - -
Sed04g0672 942 NCBIfam HAD-IC family P-type ATPase 543 649 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
Sed04g0672 942 Gene3D - 248 404 IPR023299 GO:0000166(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed04g0672 Sed-Chr4:5284410 Sed06g1587 Sed-Chr6:40674301 0.00E+00 dispersed
Sed04g0671 Sed-Chr4:5284410 Sed04g0672 Sed-Chr4:5284410 0.00E+00 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed04g0672 K14802 - csv:101207069 1670.6