Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed04g0677 ATGGATTCTGAAACTCTGGCCTGTTTTTGGATCCAAGATTCTTGTTCCCAAGTGAAGGGAAATGGAAACAAAAGAAGGCTGACTTTGGATCAAGTTGGGTTGCTTGAGAAGAGCTTTAATGCTGGAAACAAACTTGAACATGAGAGGAAGGTTCAAATTGCAAAGGAGACTGGTTTGCGGCCTCGCCAAGTTGCAGTTTGGTTTCAGAATCGAAGAGCTCGATCAAAGTCTAAGAAAATCGAGTATGATTTTGATTCTTTGAATGCTGAATATGAGAAGCTCAAAAATGACTTTGACAGTCTTCTCAAGCTCAATCATGAGCTCAAAGTTGAGGTTGATCAACTAAGAGAAAAATGGAGTGCTAGTGAGAAGATGAAGAATCCTTTTGGACCAGTTGAACTTGAAGCCATGGATTCATTAGTTACAGAACTTGGAATATTAAAAGAAAAAGCAATGAGTGAAAATTTGTACAAGGAAGATCAGGGCAGCAGAAGTTCAAGCAAAAGCGATGATTTTTATTCTGAAAGCCCCACCAGGGAAAACCAGTCACAGTTAGATAATCTTTTGCAACGTGAATTAGGCTACTTGAAGAATGAACTTTCAGGTGATGAATTCATGGATCCCTTTAATATTATCTCTGGTGTTGTTGAAGATCAATCTTTCTGTTTCTTGTCTTACTGA 681 38.47 MDSETLACFWIQDSCSQVKGNGNKRRLTLDQVGLLEKSFNAGNKLEHERKVQIAKETGLRPRQVAVWFQNRRARSKSKKIEYDFDSLNAEYEKLKNDFDSLLKLNHELKVEVDQLREKWSASEKMKNPFGPVELEAMDSLVTELGILKEKAMSENLYKEDQGSRSSSKSDDFYSESPTRENQSQLDNLLQRELGYLKNELSGDEFMDPFNIISGVVEDQSFCFLSY 226
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 5393990 5395553 + Sed0003821.1 Sed04g0677 709280

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed04g0677 226 PRINTS Lambda-repressor HTH signature 49 58 IPR000047 GO:0003677(InterPro)
Sed04g0677 226 PRINTS Lambda-repressor HTH signature 58 74 IPR000047 GO:0003677(InterPro)
Sed04g0677 226 MobiDBLite consensus disorder prediction 167 185 - -
Sed04g0677 226 Pfam Homeodomain 24 76 IPR001356 GO:0003677(InterPro)
Sed04g0677 226 Coils Coil 77 118 - -
Sed04g0677 226 SUPERFAMILY Homeodomain-like 12 79 IPR009057 -
Sed04g0677 226 CDD homeodomain 24 79 IPR001356 GO:0003677(InterPro)
Sed04g0677 226 FunFam homeobox-leucine zipper protein ATHB-6-like 26 72 - -
Sed04g0677 226 Gene3D - 15 82 - -
Sed04g0677 226 SMART HOX_1 20 82 IPR001356 GO:0003677(InterPro)
Sed04g0677 226 ProSiteProfiles 'Homeobox' domain profile. 18 78 IPR001356 GO:0003677(InterPro)
Sed04g0677 226 ProSitePatterns 'Homeobox' domain signature. 53 76 IPR017970 GO:0000981(InterPro)|GO:0006355(InterPro)
Sed04g0677 226 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 17 169 IPR045224 GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0043565(PANTHER)|GO:0045893(PANTHER)
Sed04g0677 226 Pfam Homeobox associated leucine zipper 78 118 IPR003106 GO:0006355(InterPro)|GO:0043565(InterPro)
Sed04g0677 226 MobiDBLite consensus disorder prediction 156 185 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed04g0677 K09338 - - csv:101204430 279.256
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed04g0677 Sed-Chr4:5393990 Sed08g2572 Sed-Chr8:38233694 1.50E-19 dispersed
Sed04g0677 Sed-Chr4:5393990 Sed03g0139 Sed-Chr3:895749 8.60E-20 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g846 . Blo16g01135 . Bda11g01236 Bpe13g00467 . . . . . . . . . Sed04g0677 . . Bhi07g01613 Tan04g1126 Cmetu10g1215 Lac13g0276 Hepe10g1711 . . Cla05g02477 Cam05g2661 Cec05g2695 Cco05g2730 Clacu05g2663 Cmu05g2517 Cre05g2632 . . Cone6ag0614 Cone9ag0617 Lsi04g00464 Csa05g02414 Chy10g00972 Cme10g00452 . . . Bda11g01236 . . Bma01g00080 Bma06g00658 . . . . . Car04g01668 Car15g00313 Cpe13g00941 . . . . . . . . . . . . . . . . . Chy09g00265 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013330 0 1 0 0 0 1 2 1 1 1 1 1 2 1 1 1 1 0 2 1 1 1 1 1 1 1 1 1 1 0 27
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
38059 PF00046 Homeodomain 2.70E-15 CL0123 Sed TF