Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed04g0692 | ATGACAAGCAATGGGATGGCGTTTTTCCCATCAAATTTCATGCTACAAACGTCCCACGAAGATCATCACCACCACTCATCTCCTCCCTCCCTGAACCCAATCCTACCTTCTTGCACACCCCAAGATTTCCATGGAGTTGCATCGTTTCTAGGAAAGCGATCGATGTCATTTTCGGGAGCCGAGATGGCGGAGGAAGCGAACAACGGCGAGGATGAGTTTTCGGACGACGGGTCACAGGCGGGTGAGAAAAAGAGGAGACTTAACATGGAGCAGGTCAAAACGCTTGAGAAAAACTTCGAGCTTGGGAACAAGCTTGAGCCTGAGAGGAAAATGCAACTGGCTCGAGCCCTTGGTCTCCAGCCAAGGCAAATCGCTATCTGGTTTCAGAACAGAAGGGCTCGGTGGAAGACAAAGCAGCTTGAAAAAGACTATGATCTTCTCAAAACTCAATTTGAGGCTATCAAATCAGATAATGAAACCCTCAAATCCCACAACCAGAAACTTCAAGCAGAGATAATGGCACTAAAAAGCAGAGAGCCAACAGAATCAATAAACCTGAACAAGGAAACAGAGGGGTGTAGCAGTAACAGAAGTGAAAACAGCTCTGATAACATCAAATTGGACATAATTTCAAGAACACCACCAGCCATGGATAGCCCTCATGATCACAATCAGCATCACCAAACAAACAGACCTCTTTTTCCCAATTCCTTAAGGCCACCAGCTCTGGCTCAGCTCTTTCAAACCTCCTCAAAGCAACAACTTGACAACAACAACAACAACAATCATCCTCAAATTGCTAAAGAAGATCAAAGCACTAGCTTGTCCAATATGTTCTGTGGAATGGATGATCATTCTGGATTTTGGCCTTGGTTGGAGCAGCAACATTTCAACTAA | 897 | 45.15 | MTSNGMAFFPSNFMLQTSHEDHHHHSSPPSLNPILPSCTPQDFHGVASFLGKRSMSFSGAEMAEEANNGEDEFSDDGSQAGEKKRRLNMEQVKTLEKNFELGNKLEPERKMQLARALGLQPRQIAIWFQNRRARWKTKQLEKDYDLLKTQFEAIKSDNETLKSHNQKLQAEIMALKSREPTESINLNKETEGCSSNRSENSSDNIKLDIISRTPPAMDSPHDHNQHHQTNRPLFPNSLRPPALAQLFQTSSKQQLDNNNNNNHPQIAKEDQSTSLSNMFCGMDDHSGFWPWLEQQHFN | 298 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 5541415 | 5542839 | - | Sed0011889.1 | Sed04g0692 | 709295 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed04g0692 | 298 | FunFam | Homeobox-leucine zipper protein ATHB-13 | 75 | 142 | - | - | |
Sed04g0692 | 298 | SUPERFAMILY | Homeodomain-like | 74 | 140 | IPR009057 | - | |
Sed04g0692 | 298 | MobiDBLite | consensus disorder prediction | 60 | 84 | - | - | |
Sed04g0692 | 298 | SMART | HOX_1 | 81 | 142 | IPR001356 | GO:0003677(InterPro) | |
Sed04g0692 | 298 | ProSitePatterns | 'Homeobox' domain signature. | 113 | 136 | IPR017970 | GO:0000981(InterPro)|GO:0006355(InterPro) | |
Sed04g0692 | 298 | Pfam | Homeobox associated leucine zipper | 138 | 178 | IPR003106 | GO:0006355(InterPro)|GO:0043565(InterPro) | |
Sed04g0692 | 298 | MobiDBLite | consensus disorder prediction | 186 | 208 | - | - | |
Sed04g0692 | 298 | MobiDBLite | consensus disorder prediction | 182 | 238 | - | - | |
Sed04g0692 | 298 | ProSiteProfiles | 'Homeobox' domain profile. | 78 | 138 | IPR001356 | GO:0003677(InterPro) | |
Sed04g0692 | 298 | Pfam | Homeodomain | 83 | 136 | IPR001356 | GO:0003677(InterPro) | |
Sed04g0692 | 298 | PRINTS | Lambda-repressor HTH signature | 109 | 118 | IPR000047 | GO:0003677(InterPro) | |
Sed04g0692 | 298 | PRINTS | Lambda-repressor HTH signature | 118 | 134 | IPR000047 | GO:0003677(InterPro) | |
Sed04g0692 | 298 | Coils | Coil | 151 | 178 | - | - | |
Sed04g0692 | 298 | Gene3D | - | 75 | 144 | - | - | |
Sed04g0692 | 298 | CDD | homeodomain | 83 | 139 | IPR001356 | GO:0003677(InterPro) | |
Sed04g0692 | 298 | PANTHER | HOMEOBOX-LEUCINE ZIPPER PROTEIN | 61 | 279 | IPR045224 | GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0043565(PANTHER)|GO:0045893(PANTHER) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed04g0692 | Sed-Chr4:5541415 | Sed11g1992 | Sed-Chr11:34074679 | 3.70E-47 | dispersed | |
Sed04g0692 | Sed-Chr4:5541415 | Sed04g0693 | Sed-Chr4:5541415 | 4.30E-120 | tandem | |
Sed03g0193 | Sed-Chr3:1194664 | Sed04g0692 | Sed-Chr4:5541415 | 1.80E-49 | wgd | |
Sed04g0692 | Sed-Chr4:5541415 | Sed06g1545 | Sed-Chr6:40270934 | 1.50E-120 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
38062 | PF00046 | Homeodomain | 2.90E-15 | CL0123 | Sed | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed04g0692 | K09338 | - | csv:101221595 | 472.241 |