Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed04g0692 ATGACAAGCAATGGGATGGCGTTTTTCCCATCAAATTTCATGCTACAAACGTCCCACGAAGATCATCACCACCACTCATCTCCTCCCTCCCTGAACCCAATCCTACCTTCTTGCACACCCCAAGATTTCCATGGAGTTGCATCGTTTCTAGGAAAGCGATCGATGTCATTTTCGGGAGCCGAGATGGCGGAGGAAGCGAACAACGGCGAGGATGAGTTTTCGGACGACGGGTCACAGGCGGGTGAGAAAAAGAGGAGACTTAACATGGAGCAGGTCAAAACGCTTGAGAAAAACTTCGAGCTTGGGAACAAGCTTGAGCCTGAGAGGAAAATGCAACTGGCTCGAGCCCTTGGTCTCCAGCCAAGGCAAATCGCTATCTGGTTTCAGAACAGAAGGGCTCGGTGGAAGACAAAGCAGCTTGAAAAAGACTATGATCTTCTCAAAACTCAATTTGAGGCTATCAAATCAGATAATGAAACCCTCAAATCCCACAACCAGAAACTTCAAGCAGAGATAATGGCACTAAAAAGCAGAGAGCCAACAGAATCAATAAACCTGAACAAGGAAACAGAGGGGTGTAGCAGTAACAGAAGTGAAAACAGCTCTGATAACATCAAATTGGACATAATTTCAAGAACACCACCAGCCATGGATAGCCCTCATGATCACAATCAGCATCACCAAACAAACAGACCTCTTTTTCCCAATTCCTTAAGGCCACCAGCTCTGGCTCAGCTCTTTCAAACCTCCTCAAAGCAACAACTTGACAACAACAACAACAACAATCATCCTCAAATTGCTAAAGAAGATCAAAGCACTAGCTTGTCCAATATGTTCTGTGGAATGGATGATCATTCTGGATTTTGGCCTTGGTTGGAGCAGCAACATTTCAACTAA 897 45.15 MTSNGMAFFPSNFMLQTSHEDHHHHSSPPSLNPILPSCTPQDFHGVASFLGKRSMSFSGAEMAEEANNGEDEFSDDGSQAGEKKRRLNMEQVKTLEKNFELGNKLEPERKMQLARALGLQPRQIAIWFQNRRARWKTKQLEKDYDLLKTQFEAIKSDNETLKSHNQKLQAEIMALKSREPTESINLNKETEGCSSNRSENSSDNIKLDIISRTPPAMDSPHDHNQHHQTNRPLFPNSLRPPALAQLFQTSSKQQLDNNNNNNHPQIAKEDQSTSLSNMFCGMDDHSGFWPWLEQQHFN 298
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 5541415 5542839 - Sed0011889.1 Sed04g0692 709295
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed04g0692 298 FunFam Homeobox-leucine zipper protein ATHB-13 75 142 - -
Sed04g0692 298 SUPERFAMILY Homeodomain-like 74 140 IPR009057 -
Sed04g0692 298 MobiDBLite consensus disorder prediction 60 84 - -
Sed04g0692 298 SMART HOX_1 81 142 IPR001356 GO:0003677(InterPro)
Sed04g0692 298 ProSitePatterns 'Homeobox' domain signature. 113 136 IPR017970 GO:0000981(InterPro)|GO:0006355(InterPro)
Sed04g0692 298 Pfam Homeobox associated leucine zipper 138 178 IPR003106 GO:0006355(InterPro)|GO:0043565(InterPro)
Sed04g0692 298 MobiDBLite consensus disorder prediction 186 208 - -
Sed04g0692 298 MobiDBLite consensus disorder prediction 182 238 - -
Sed04g0692 298 ProSiteProfiles 'Homeobox' domain profile. 78 138 IPR001356 GO:0003677(InterPro)
Sed04g0692 298 Pfam Homeodomain 83 136 IPR001356 GO:0003677(InterPro)
Sed04g0692 298 PRINTS Lambda-repressor HTH signature 109 118 IPR000047 GO:0003677(InterPro)
Sed04g0692 298 PRINTS Lambda-repressor HTH signature 118 134 IPR000047 GO:0003677(InterPro)
Sed04g0692 298 Coils Coil 151 178 - -
Sed04g0692 298 Gene3D - 75 144 - -
Sed04g0692 298 CDD homeodomain 83 139 IPR001356 GO:0003677(InterPro)
Sed04g0692 298 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 61 279 IPR045224 GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0043565(PANTHER)|GO:0045893(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed04g0692 Sed-Chr4:5541415 Sed11g1992 Sed-Chr11:34074679 3.70E-47 dispersed
Sed04g0692 Sed-Chr4:5541415 Sed04g0693 Sed-Chr4:5541415 4.30E-120 tandem
Sed03g0193 Sed-Chr3:1194664 Sed04g0692 Sed-Chr4:5541415 1.80E-49 wgd
Sed04g0692 Sed-Chr4:5541415 Sed06g1545 Sed-Chr6:40270934 1.50E-120 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
38062 PF00046 Homeodomain 2.90E-15 CL0123 Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed04g0692 K09338 - csv:101221595 472.241