Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed04g0693 ATGTCATTTTCGGGAGCCGAGATGGCGGAGGAAGCGAACAACGGCGAGGATGAGTTTTCGGACGACGGGTCACAGGCGGGTGAGAAAAAGAGGAGACTTAACATGGAGCAGGTCAAAACGCTTGAGAAAAACTTCGAGCTTGGGAACAAGCTTGAGCCTGAGAGGAAAATGCAACTGGCTCGAGCCCTTGGTCTCCAGCCAAGGCAAATCGCTATCTGGTTTCAGAACAGAAGGGCTCGGTGGAAGACAAAGCAGCTTGAAAAAGACTATGATCTTCTCAAAACTCAATTTGAGGCTATCAAATCAGATAATGAAACCCTCAAATCCCACAACCAGAAACTTCAAGCAGAGATAATGGCACTAAAAAGCAGAGAGCCAACAGAATCAATAAACCTGAACAAGGAAACAGAGGGGTGTAGCAGTAACAGAAGTGAAAACAGCTCTGATAACATCAAATTGGACATAATTTCAAGAACACCACCAGCCATGGATAGCCCTCATGATCACAATCAGCATCACCAAACAAACAGACCTCTTTTTCCCAATTCCTTAAGGCCACCAGCTCTGGCTCAGCTCTTTCAAACCTCCTCAAAGCAACAACTTGACAACAACAACAACAACAATCATCCTCAAATTGCTAAAGAAGATCAAAGCACTAGCTTGTCCAATATGTTCTGTGGAATGGATGATCATTCTGGATTTTGGCCTTGGTTGGAGCAGCAACATTTCAACTAA 735 44.49 MSFSGAEMAEEANNGEDEFSDDGSQAGEKKRRLNMEQVKTLEKNFELGNKLEPERKMQLARALGLQPRQIAIWFQNRRARWKTKQLEKDYDLLKTQFEAIKSDNETLKSHNQKLQAEIMALKSREPTESINLNKETEGCSSNRSENSSDNIKLDIISRTPPAMDSPHDHNQHHQTNRPLFPNSLRPPALAQLFQTSSKQQLDNNNNNNHPQIAKEDQSTSLSNMFCGMDDHSGFWPWLEQQHFN 244
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 5541415 5542839 - Sed0011889.2 Sed04g0693 709296
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed04g0693 244 Coils Coil 97 124 - -
Sed04g0693 244 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 16 225 IPR045224 GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0043565(PANTHER)|GO:0045893(PANTHER)
Sed04g0693 244 Pfam Homeodomain 29 82 IPR001356 GO:0003677(InterPro)
Sed04g0693 244 PRINTS Lambda-repressor HTH signature 55 64 IPR000047 GO:0003677(InterPro)
Sed04g0693 244 PRINTS Lambda-repressor HTH signature 64 80 IPR000047 GO:0003677(InterPro)
Sed04g0693 244 Gene3D - 21 90 - -
Sed04g0693 244 ProSitePatterns 'Homeobox' domain signature. 59 82 IPR017970 GO:0000981(InterPro)|GO:0006355(InterPro)
Sed04g0693 244 FunFam Homeobox-leucine zipper protein ATHB-13 21 88 - -
Sed04g0693 244 ProSiteProfiles 'Homeobox' domain profile. 24 84 IPR001356 GO:0003677(InterPro)
Sed04g0693 244 Pfam Homeobox associated leucine zipper 84 124 IPR003106 GO:0006355(InterPro)|GO:0043565(InterPro)
Sed04g0693 244 CDD homeodomain 29 85 IPR001356 GO:0003677(InterPro)
Sed04g0693 244 SMART HOX_1 27 88 IPR001356 GO:0003677(InterPro)
Sed04g0693 244 MobiDBLite consensus disorder prediction 158 184 - -
Sed04g0693 244 SUPERFAMILY Homeodomain-like 20 86 IPR009057 -
Sed04g0693 244 MobiDBLite consensus disorder prediction 1 35 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed03g0193 Sed-Chr3:1194664 Sed04g0693 Sed-Chr4:5541415 8.70E-44 dispersed
Sed04g0693 Sed-Chr4:5541415 Sed06g1545 Sed-Chr6:40270934 2.80E-93 dispersed
Sed04g0692 Sed-Chr4:5541415 Sed04g0693 Sed-Chr4:5541415 4.30E-120 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
38063 PF00046 Homeodomain 2.10E-15 CL0123 Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed04g0693 K09338 - csv:101221595 392.504