Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed04g0693 | ATGTCATTTTCGGGAGCCGAGATGGCGGAGGAAGCGAACAACGGCGAGGATGAGTTTTCGGACGACGGGTCACAGGCGGGTGAGAAAAAGAGGAGACTTAACATGGAGCAGGTCAAAACGCTTGAGAAAAACTTCGAGCTTGGGAACAAGCTTGAGCCTGAGAGGAAAATGCAACTGGCTCGAGCCCTTGGTCTCCAGCCAAGGCAAATCGCTATCTGGTTTCAGAACAGAAGGGCTCGGTGGAAGACAAAGCAGCTTGAAAAAGACTATGATCTTCTCAAAACTCAATTTGAGGCTATCAAATCAGATAATGAAACCCTCAAATCCCACAACCAGAAACTTCAAGCAGAGATAATGGCACTAAAAAGCAGAGAGCCAACAGAATCAATAAACCTGAACAAGGAAACAGAGGGGTGTAGCAGTAACAGAAGTGAAAACAGCTCTGATAACATCAAATTGGACATAATTTCAAGAACACCACCAGCCATGGATAGCCCTCATGATCACAATCAGCATCACCAAACAAACAGACCTCTTTTTCCCAATTCCTTAAGGCCACCAGCTCTGGCTCAGCTCTTTCAAACCTCCTCAAAGCAACAACTTGACAACAACAACAACAACAATCATCCTCAAATTGCTAAAGAAGATCAAAGCACTAGCTTGTCCAATATGTTCTGTGGAATGGATGATCATTCTGGATTTTGGCCTTGGTTGGAGCAGCAACATTTCAACTAA | 735 | 44.49 | MSFSGAEMAEEANNGEDEFSDDGSQAGEKKRRLNMEQVKTLEKNFELGNKLEPERKMQLARALGLQPRQIAIWFQNRRARWKTKQLEKDYDLLKTQFEAIKSDNETLKSHNQKLQAEIMALKSREPTESINLNKETEGCSSNRSENSSDNIKLDIISRTPPAMDSPHDHNQHHQTNRPLFPNSLRPPALAQLFQTSSKQQLDNNNNNNHPQIAKEDQSTSLSNMFCGMDDHSGFWPWLEQQHFN | 244 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 5541415 | 5542839 | - | Sed0011889.2 | Sed04g0693 | 709296 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed04g0693 | 244 | Coils | Coil | 97 | 124 | - | - | |
Sed04g0693 | 244 | PANTHER | HOMEOBOX-LEUCINE ZIPPER PROTEIN | 16 | 225 | IPR045224 | GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0043565(PANTHER)|GO:0045893(PANTHER) | |
Sed04g0693 | 244 | Pfam | Homeodomain | 29 | 82 | IPR001356 | GO:0003677(InterPro) | |
Sed04g0693 | 244 | PRINTS | Lambda-repressor HTH signature | 55 | 64 | IPR000047 | GO:0003677(InterPro) | |
Sed04g0693 | 244 | PRINTS | Lambda-repressor HTH signature | 64 | 80 | IPR000047 | GO:0003677(InterPro) | |
Sed04g0693 | 244 | Gene3D | - | 21 | 90 | - | - | |
Sed04g0693 | 244 | ProSitePatterns | 'Homeobox' domain signature. | 59 | 82 | IPR017970 | GO:0000981(InterPro)|GO:0006355(InterPro) | |
Sed04g0693 | 244 | FunFam | Homeobox-leucine zipper protein ATHB-13 | 21 | 88 | - | - | |
Sed04g0693 | 244 | ProSiteProfiles | 'Homeobox' domain profile. | 24 | 84 | IPR001356 | GO:0003677(InterPro) | |
Sed04g0693 | 244 | Pfam | Homeobox associated leucine zipper | 84 | 124 | IPR003106 | GO:0006355(InterPro)|GO:0043565(InterPro) | |
Sed04g0693 | 244 | CDD | homeodomain | 29 | 85 | IPR001356 | GO:0003677(InterPro) | |
Sed04g0693 | 244 | SMART | HOX_1 | 27 | 88 | IPR001356 | GO:0003677(InterPro) | |
Sed04g0693 | 244 | MobiDBLite | consensus disorder prediction | 158 | 184 | - | - | |
Sed04g0693 | 244 | SUPERFAMILY | Homeodomain-like | 20 | 86 | IPR009057 | - | |
Sed04g0693 | 244 | MobiDBLite | consensus disorder prediction | 1 | 35 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed03g0193 | Sed-Chr3:1194664 | Sed04g0693 | Sed-Chr4:5541415 | 8.70E-44 | dispersed | |
Sed04g0693 | Sed-Chr4:5541415 | Sed06g1545 | Sed-Chr6:40270934 | 2.80E-93 | dispersed | |
Sed04g0692 | Sed-Chr4:5541415 | Sed04g0693 | Sed-Chr4:5541415 | 4.30E-120 | tandem |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
38063 | PF00046 | Homeodomain | 2.10E-15 | CL0123 | Sed | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed04g0693 | K09338 | - | csv:101221595 | 392.504 |