Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed04g0699 ATGGCACATAATTTTCACCAATATTCCATTTTCTTTGGCGCCCTAATTATTTGTGTTACACTTACTGCCCCTTGCTTTGGATTCCATCCAAAGTCCTCTAATGTGTGGTCTAACAATCAGTCTTACGTTGTTTCCAATTGGTCCCCGGCCGTTGCCACTTGGTACGGCCCACCTCACGGTGCCGGGAGCGATGGTGGTTCATGCGGGTATGGAAACGCGGTGGCACAACCACCATTTTCATCATTCGTTACGGCGGTAGGACCTTCATTGTACAATTCAGGAAAATCCTGTGGAGCTTGTTACGAGGTGAAATGCTCGAGCATAGGCGTGTGCTCAGGAAATTCGGTGACGGTGGTTATAACTGATAGTTGTCCTGGTGGCCCCTGTGCTTCCGACGCTGTCCATTTTGACCTCAGCGGAACTGCTTTTGGTGCTTTGGCTACACCCGGTAAAGCCGATCAACTTCGTTCTATCGGAAGTCTCCAAATTCAACATAGAAGGGTGCAATGTAAATATTCTGGAACGATCAGTTTTGTGGTGGACATGGGATCGAACCCGAGCTATTTCGCAGTGCTGATCGAATATGAAAATGGAGATGGAGATCTTGGTTCGGTGCAACTAAAACAGGGAGGCTCGAACTCATGGATTCCAATGAGTCAATCATGGGGTGCAGTTTGGAAGCTCAACTTCGGCTCGGTCCTTCACCCTCCCTTCTCCCTCAGACTCACCACCCTCAACTCCGCCAACACCCTAGTGGCTAATGATGTAATTCCCATCGGCTGGAAGCCCGGGAACACTTATAGATCAGCCTTCAACTTCCATACTAATAATTAA 834 48.44 MAHNFHQYSIFFGALIICVTLTAPCFGFHPKSSNVWSNNQSYVVSNWSPAVATWYGPPHGAGSDGGSCGYGNAVAQPPFSSFVTAVGPSLYNSGKSCGACYEVKCSSIGVCSGNSVTVVITDSCPGGPCASDAVHFDLSGTAFGALATPGKADQLRSIGSLQIQHRRVQCKYSGTISFVVDMGSNPSYFAVLIEYENGDGDLGSVQLKQGGSNSWIPMSQSWGAVWKLNFGSVLHPPFSLRLTTLNSANTLVANDVIPIGWKPGNTYRSAFNFHTNN 277
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 5651659 5653042 + Sed0007219.1 Sed04g0699 709302
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed04g0699 277 PANTHER EXPANSIN-B3 23 274 - -
Sed04g0699 277 SUPERFAMILY PHL pollen allergen 175 269 IPR036749 -
Sed04g0699 277 Pfam Expansin C-terminal domain 176 258 IPR007117 -
Sed04g0699 277 SMART dpbb_1 83 165 IPR007112 -
Sed04g0699 277 SUPERFAMILY Barwin-like endoglucanases 41 174 IPR036908 -
Sed04g0699 277 Gene3D - 30 171 IPR036908 -
Sed04g0699 277 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 187 269 IPR007117 -
Sed04g0699 277 Pfam Lytic transglycolase 85 150 IPR009009 -
Sed04g0699 277 Gene3D - 172 274 IPR036749 -
Sed04g0699 277 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 65 175 IPR007112 -
Sed04g0699 277 PRINTS Expansin/Lol pI family signature 46 61 IPR007118 GO:0005576(InterPro)
Sed04g0699 277 PRINTS Expansin/Lol pI family signature 158 174 IPR007118 GO:0005576(InterPro)
Sed04g0699 277 PRINTS Expansin/Lol pI family signature 87 105 IPR007118 GO:0005576(InterPro)
Sed04g0699 277 PRINTS Expansin/Lol pI family signature 255 269 IPR007118 GO:0005576(InterPro)
Sed04g0699 277 PRINTS Expansin/Lol pI family signature 64 82 IPR007118 GO:0005576(InterPro)
Sed04g0699 277 PRINTS Expansin/Lol pI family signature 215 229 IPR007118 GO:0005576(InterPro)
Sed04g0699 277 PRINTS Major pollen allergen Lol pI signature 178 193 IPR005795 GO:0005576(InterPro)|GO:0019953(InterPro)
Sed04g0699 277 PRINTS Major pollen allergen Lol pI signature 194 209 IPR005795 GO:0005576(InterPro)|GO:0019953(InterPro)
Sed04g0699 277 PRINTS Major pollen allergen Lol pI signature 224 241 IPR005795 GO:0005576(InterPro)|GO:0019953(InterPro)
Sed04g0699 277 PRINTS Major pollen allergen Lol pI signature 105 115 IPR005795 GO:0005576(InterPro)|GO:0019953(InterPro)
Sed04g0699 277 CDD DPBB_EXPB_N 47 170 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed02g1811 Sed-Chr2:52702218 Sed04g0699 Sed-Chr4:5651659 2.30E-104 dispersed
Sed04g0699 Sed-Chr4:5651659 Sed04g0848 Sed-Chr4:7374194 1.50E-135 dispersed
Sed04g0699 Sed-Chr4:5651659 Sed05g1952 Sed-Chr5:32873225 1.00E-62 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed04g0699 - - - 0.0