Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed04g0715 ATGTCTGGTCGGGTTCTTGAAGCCTTGTCATTTGGGTCTCACCATGGTCAAGGTAACCAATCTCTGCCCTTTTCATCTGCAAATCCATCAATGAAGTTCTTGCTCTTGCATGGGTATCTGGACATTTGGGTCAAGGAGGCCAGGAACCTGCCCAATATGGATGTGTTTCATAACCCTCTTGGGGATGTGTTTTCAAAAGGGAAGAGCCCTTCAAAGGGGACTAGTGATCCCTATGTCACCATTTCTGTATCAGGGACTGTGATAGGAAGAACTTTTGTGATTGATAATGATGAGAATCCTGCTTGGATGCAACATTTTAATATTCCTGTAGCTCATTATGGTGCCGAATTGTACTTTGTGGTTAAAGACCATGATGTTGTGGGATCACAAATCATTGGTGTTGTTGCAATTCCTGTGGAGCAATTGTTCTCTGGAGCCTTGGTTGAGGGAACCTACCCAATCCTGAATAGTTGTAGGCAGCCTTGCAAGCAAGGGGCCGTCTTGAGTTTGTCCATTCGGTATACTCCGGCGGACCAGGCAGCTATTTTTCAGGGTGGAATGTATGCATCTTCGGACCACCAGGGAGTTTCAGGCACATATTTTCCTCTTAGGAAGGGGTGTAAGCTGACATTGTACCAAGATGCCCATGTTGAGGATGGATATCTTCCAACAGATTTTAGGCTTCATGGTGGGGCTGAATATGAACATAGGAGCTGTTGGGATGACATCTCTGAATCAATTAGACAGGCTCGTCGGTTGATCTATATTACAGGCTGGTCTGTATGCCACGGCGTTAGACTGGTTAGAGATGGAAAACACAAAGAATGCATATTAGGGGACCTTCTCAAAGCCAAGTCCCAAGAAGGAGTAAGAGTGTTGCTTCTTGTATGGGATGATCCAACTTCACGTGGTATGTTGGGATGGAAAAAGGTTGGGATGTTGCATACAAATGATGAGGAGACTCGTCGTTTTTTCAAGCATTCTTCAGTCCAAGTGATTTTGTGCCCACGATCTGGTGGAAAAGGCCATAGTTGGATTAGAAAACCGGAAGCTGGAGCCATCTATTCCCACCATCAAAAGACAGTTATCGTAGATGCTGATGCTGGCCATCACAAAAGAAAAATTGTAGCTTTTGTTGGAGGTCTCGATTTATGTGTCGGTCGATATGATACTCCGAGACATCCTCTTTTCAAGACACTGCAAACTACGCACGTGGATGATTTCTACAACCCAAATTTTGCGGGACCAACTACTGGTTGTCCAAGAGTACCATGGCATGATTTGCACTCTAAGATTGATGGTCCTGCTGCATACGATGTCCTTGCAAATTTTGAGGAGCGTTGGTTGAGAGCTTCGGAGCCTCATGTGCTTAGAAGGCTAAAAAAGTTACATGAAGATGTATTGCTCAAAATTGAAAGAATTCCTGAAATTTTGGGAATTGATGATGCTACTCAACTGTGTAACAATGATCCAGAAGGTTGGAACGTCCAGATTTTTCGTTCGATCGATTCCAATTCTGTGAAAGGATTTCCTGACAACCCAAAAGATGCTATAAGTAGGAACTTAGTATGTGGAAAGAATGTGATGATAGACATGAGTATACATTCAGCATATGTTAGTGCAATCCGTTCTGCTCAACGCTTCATTTATATTGAAAACCAGTACTTCCTTGGATCATCTTATAATTGGAGTGCTCTCAAAGACGTGGGGGCAAATAACTTAATACCGATGGAAATTGCCCTTAAAATTGTGGAGAAAATCAAAGCTAACGAAAGGTTTTCTGTATACGTGGTTATCCCAATGTGGCCGGAAGGTGTTCCTACAGGCTTTCAAGTTCAAAGAATTCTTTTCTGGCAGAGTAGGACAATGCAAATGATGTATGAAATGATATATAGAGCTTTGGAGGAGGTTGGACTTCATAAAACATATGAGCCTGAAGACTACTTGAATTTCTTTTGCCTTGGAAATCGCGAGGTGGTCAGTGATAGAGATGGCGTCGAAGCTGGGAATGCAGAAAAGATTCAATCGCATGTTCGTAAGAGTCGACGCTTTATGATCTATGTTCATTCGAAAGGAATGATAGTAGATGACGAGTATGTCATATTGGGGTCGGCGAATATCAATCAGCGGTCCCTTGAAGGTACCAGAGACACTGAAATTGCAATGGGTGCATATCAACCTCATCATACATGGTCCTCAAGCAAACGCTCAAGCCCACGTGGTCAGGTGTACGGATATAGAATGTCATTATGGACAGAGCACACAGGGACTGTGGAGGAATGTCTCGAGAGACCGGAGAGTATCGAATGTGTAAGACGAATGAGATCATTGGGTGAGAAAAATTGGAGACAATATGTAGCTGAGGAAGTAACTGAAATGAGAAGCCATCTTCTTAAGTATCCATTGCAAGTTGACCCAACTGGTAATATCACCCATCTTCCTGGTTCTGAAACCTTCCCCGACCTTGGTGGTAAAATATTGGGCACATTCATTCCCATCCAAGAGAACCTTACAATATGA 2520 43.21 MSGRVLEALSFGSHHGQGNQSLPFSSANPSMKFLLLHGYLDIWVKEARNLPNMDVFHNPLGDVFSKGKSPSKGTSDPYVTISVSGTVIGRTFVIDNDENPAWMQHFNIPVAHYGAELYFVVKDHDVVGSQIIGVVAIPVEQLFSGALVEGTYPILNSCRQPCKQGAVLSLSIRYTPADQAAIFQGGMYASSDHQGVSGTYFPLRKGCKLTLYQDAHVEDGYLPTDFRLHGGAEYEHRSCWDDISESIRQARRLIYITGWSVCHGVRLVRDGKHKECILGDLLKAKSQEGVRVLLLVWDDPTSRGMLGWKKVGMLHTNDEETRRFFKHSSVQVILCPRSGGKGHSWIRKPEAGAIYSHHQKTVIVDADAGHHKRKIVAFVGGLDLCVGRYDTPRHPLFKTLQTTHVDDFYNPNFAGPTTGCPRVPWHDLHSKIDGPAAYDVLANFEERWLRASEPHVLRRLKKLHEDVLLKIERIPEILGIDDATQLCNNDPEGWNVQIFRSIDSNSVKGFPDNPKDAISRNLVCGKNVMIDMSIHSAYVSAIRSAQRFIYIENQYFLGSSYNWSALKDVGANNLIPMEIALKIVEKIKANERFSVYVVIPMWPEGVPTGFQVQRILFWQSRTMQMMYEMIYRALEEVGLHKTYEPEDYLNFFCLGNREVVSDRDGVEAGNAEKIQSHVRKSRRFMIYVHSKGMIVDDEYVILGSANINQRSLEGTRDTEIAMGAYQPHHTWSSSKRSSPRGQVYGYRMSLWTEHTGTVEECLERPESIECVRRMRSLGEKNWRQYVAEEVTEMRSHLLKYPLQVDPTGNITHLPGSETFPDLGGKILGTFIPIQENLTI 839
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 5793597 5811384 + Sed0004593.1 Sed04g0715 709318
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed04g0715 839 FunFam Phospholipase D delta 230 467 - -
Sed04g0715 839 ProSiteProfiles C2 domain profile. 19 152 IPR000008 -
Sed04g0715 839 SUPERFAMILY Phospholipase D/nuclease 194 456 - -
Sed04g0715 839 SMART C2_3c 39 151 IPR000008 -
Sed04g0715 839 Pfam Phospholipase D C terminal 759 829 IPR024632 -
Sed04g0715 839 CDD C2_plant_PLD 34 175 - -
Sed04g0715 839 Gene3D Endonuclease Chain A 497 747 - -
Sed04g0715 839 PANTHER PHOSPHOLIPASE D 35 827 IPR015679 GO:0004630(PANTHER)|GO:0005886(PANTHER)|GO:0009395(PANTHER)
Sed04g0715 839 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 36 176 IPR035892 -
Sed04g0715 839 Gene3D C2 domain 25 174 IPR035892 -
Sed04g0715 839 Gene3D Endonuclease Chain A 228 466 - -
Sed04g0715 839 Pfam C2 domain 38 153 IPR000008 -
Sed04g0715 839 SMART pld_4 353 388 IPR001736 GO:0003824(InterPro)
Sed04g0715 839 SMART pld_4 684 711 IPR001736 GO:0003824(InterPro)
Sed04g0715 839 SUPERFAMILY Phospholipase D/nuclease 534 771 - -
Sed04g0715 839 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 353 388 IPR001736 GO:0003824(InterPro)
Sed04g0715 839 FunFam Phospholipase D 501 730 - -
Sed04g0715 839 Pfam Phospholipase D Active site motif 686 711 IPR001736 GO:0003824(InterPro)
Sed04g0715 839 PIRSF PLD_plant 25 839 IPR011402 GO:0004630(InterPro)|GO:0005509(InterPro)|GO:0016020(InterPro)|GO:0046470(InterPro)
Sed04g0715 839 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 684 711 IPR001736 GO:0003824(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed04g0715 Sed-Chr4:5793597 Sed04g0717 Sed-Chr4:5819666 0.00E+00 dispersed
Sed04g0715 Sed-Chr4:5793597 Sed04g0716 Sed-Chr4:5819666 0.00E+00 tandem
Sed03g1297 Sed-Chr3:8285576 Sed04g0715 Sed-Chr4:5793597 0.00E+00 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed04g0715 K01115 - csv:101208016 1487.24