Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed04g0716 ATGGCTGGTCGGGTTCTTGAAGCCTTGCCATTTAGGTCTCAACATGGTCAAGGTAATCAAGCTCTGCCCTTTTCATCTGCAAATCCATCATTGAAGTTCTTGCTCTTGCATGGTTATTTGGACATTTGGGTCAAGGAGGCCAAGAACCTGCCCAATATGGATATGTTTCATAAGACTCTTGGGGATGTGTTTTCAAAAGTGTCTTTTAAGAGTTCCAAGAACAGTTCTGGTGGGAAGAAGCCCCCAAAGGTGACTAGTGATCCCTATGTCACCATTTCTGTATCAGGGGCTGTGATAGCAAGAACTTTTGTGATTGATAATGATGAGAATCCTGCTTGGATGCAGCATTTTAATGTTCCTGTGGCTCATTATGGTGCTGAATTGCACTTTGTGGTTAAAGACCATGATGTTGTGGGATCACAAATCATTGGTGTTGTTGCAATTCCTGTGGAGCAATTGTACTCTGGAGCCTTGGTTGAGGGAACCTACCCAATCCTGAATAACAGTAGGAAGCCCTGCAAGCCCGGGGCAGTTTTGAGTTTGTCGATTCAGTATACTCCAGCGGAACAGGCAGCTATTTTTCGGGGTGGAATGTATGCATCTTCGGACCACCAGGGAGTTTCAGGCACATATTTTCCTCTTAGGAAGGGAGGTAAGCTTACATTGTATCAAGATGCCCATGTTGAGGATGGTTATCTTCCAACAGATTTTAGGCTTCATGGTGGGGTTGAATATGAACATAGGAGCTGTTGGGATGACATCTCTGAATCAATTAGACAGGCTCGTCGTTTGATCTATATTACAGGCTGGTCTGTATGCCACGGCGTTAGACTGGTTAGAGATGGAAAAGACAAAGAATGCATATTAGGGGACCTTCTCAAAGCCAAGTCCCAAGAAGGAGTAAGAGTGTTGCTTCTTATATGGGATGATCCAACTTCAACTAGTATGTTGGGATATAAAACGGTTGGGATGATGAATACAAACGATGAGGAGACTCGTCGGTTTTTCAAGCATTCTTCAGTCCAAGTGATTTTGTGCCCACGATCTGGTGGAAAAGGTCATAGTTGGATTAGAAAACAGGAAGCTGAAGCCATCTATACCCACCATCAAAAGACAGTTATTGTAGATGCTGATGCTGGCCATCACAAAAGAAAAATTGTAGCTTTTGTTGGAGGTCTCGATTTATGTTACGGTCGATATGATACTCCAAGACATCCTCTTTTCAAGACATTGCAAACTACGCACGTGGATGATTTTCACAACCCAAATTTTGTGGGACCAACTACGGGTTGTCCAAGAGAACCGTGGCATGATTTGCACTCTAAGATTGATGGTCCTGCCGCATACGATGTCCTTGCGAATTTTGAGGAGCGTTGGTTGAGAGCTTCGGAGCCTCATGGGCTTAAAAGGCTAAAAAAGTTAAATGAAGATGTATTGCTCAAAATTGAAAGAATTCCTGAAATTTTGGGAATTGATGTTGCTACTCGACTGTGTAACAATGATCCAGAAGGTTGGAACGTCCAGATTTTTCGTTCGATCGATTCCAATTCTGTGAAAGGATTTCCTGACAACCCAAAAGATGCTATAAGTAGAAACTTAGTATGTGGAAAGAATGTGATGATAGACATGAGTATACATTCAGCATATGTTAGTGCAATCCGTTCTGCTCAACGCTTCATTTATATTGAAAACCAGTACTTCCTTGGATCATCTTATAATTGGAGTGCTTACAAAGACTTAGGGGCAAATAACTTAATACCGATGGAAATTGCCCTTAAAATTGTGGAGAAAATCAAAGCCAAAGAAAGGTTTTCGGCGTACGTGGTTATCCCAATGTGGCCGGAAGGTGCTCCTACAAGCGCTCCTATTCAAAGAATTCTTTTCTGGCAGAGTAGGACAATGCAAATGATGTATGAAATGATATATAGAGCTTTGGAAGAGGTTGGACTTCATAAAACCTATGAGCCTCAAGACTACTTGAATTTCTTTTGCCTTGGAAACCGTGAGGTGGTCAGTGATAGAGACGGCATCGAAGCCGAGAATGCAGAAAAGATTCAATCGCATGTTCGTAAGAGTCGACGCTTTATGATCTATGTTCATTCGAAAGGAATGATAGTAGATGACGAGTATGTCATATTGGGGTCGGCGAATATCAATCAGCGGTCCCTTGAAGGTACCAGAGACACTGAAATTGCAATGGGTGCATATCAACCTCATCATACATGGTCCTCAAGAAAACGCTCAAGCCCACGTGGTCAGGTGTACGGATATAGAATGTCATTATGGGCAGAGCACACAGGGACTATGGAGGAATGTTTCGAGAGACCGGAGAGTATCGAATGTGTAAGACGAATGAGATCATTGGGTGAGAAAAATTGGAGACAATATGTAGCTGAGGAAGTAACTGAAATGAGAAGCCATCTTCTCAAGTATCCATTGCAAGTTGATCCAACTGGTAAGGTCACCCATCTTCCTGGTTCTGAAACCTTCCCCGACCTTGGTGGCAACATATTGGGCACATTCATTGCCATCCAAGAGAACCTTACAATATGA 2553 42.73 MAGRVLEALPFRSQHGQGNQALPFSSANPSLKFLLLHGYLDIWVKEAKNLPNMDMFHKTLGDVFSKVSFKSSKNSSGGKKPPKVTSDPYVTISVSGAVIARTFVIDNDENPAWMQHFNVPVAHYGAELHFVVKDHDVVGSQIIGVVAIPVEQLYSGALVEGTYPILNNSRKPCKPGAVLSLSIQYTPAEQAAIFRGGMYASSDHQGVSGTYFPLRKGGKLTLYQDAHVEDGYLPTDFRLHGGVEYEHRSCWDDISESIRQARRLIYITGWSVCHGVRLVRDGKDKECILGDLLKAKSQEGVRVLLLIWDDPTSTSMLGYKTVGMMNTNDEETRRFFKHSSVQVILCPRSGGKGHSWIRKQEAEAIYTHHQKTVIVDADAGHHKRKIVAFVGGLDLCYGRYDTPRHPLFKTLQTTHVDDFHNPNFVGPTTGCPREPWHDLHSKIDGPAAYDVLANFEERWLRASEPHGLKRLKKLNEDVLLKIERIPEILGIDVATRLCNNDPEGWNVQIFRSIDSNSVKGFPDNPKDAISRNLVCGKNVMIDMSIHSAYVSAIRSAQRFIYIENQYFLGSSYNWSAYKDLGANNLIPMEIALKIVEKIKAKERFSAYVVIPMWPEGAPTSAPIQRILFWQSRTMQMMYEMIYRALEEVGLHKTYEPQDYLNFFCLGNREVVSDRDGIEAENAEKIQSHVRKSRRFMIYVHSKGMIVDDEYVILGSANINQRSLEGTRDTEIAMGAYQPHHTWSSRKRSSPRGQVYGYRMSLWAEHTGTMEECFERPESIECVRRMRSLGEKNWRQYVAEEVTEMRSHLLKYPLQVDPTGKVTHLPGSETFPDLGGNILGTFIAIQENLTI 850
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 5819666 5838631 + Sed0020576.1 Sed04g0716 709319
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed04g0716 850 FunFam Phospholipase D delta 241 478 - -
Sed04g0716 850 Pfam Phospholipase D Active site motif 366 399 IPR001736 GO:0003824(InterPro)
Sed04g0716 850 Pfam Phospholipase D Active site motif 697 722 IPR001736 GO:0003824(InterPro)
Sed04g0716 850 SUPERFAMILY Phospholipase D/nuclease 545 782 - -
Sed04g0716 850 SUPERFAMILY Phospholipase D/nuclease 207 463 - -
Sed04g0716 850 CDD C2_plant_PLD 34 186 - -
Sed04g0716 850 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 36 187 IPR035892 -
Sed04g0716 850 Gene3D Endonuclease Chain A 510 747 - -
Sed04g0716 850 PIRSF PLD_plant 25 850 IPR011402 GO:0004630(InterPro)|GO:0005509(InterPro)|GO:0016020(InterPro)|GO:0046470(InterPro)
Sed04g0716 850 FunFam Phospholipase D 512 741 - -
Sed04g0716 850 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 364 399 IPR001736 GO:0003824(InterPro)
Sed04g0716 850 SMART pld_4 364 399 IPR001736 GO:0003824(InterPro)
Sed04g0716 850 SMART pld_4 695 722 IPR001736 GO:0003824(InterPro)
Sed04g0716 850 ProSiteProfiles C2 domain profile. 19 163 IPR000008 -
Sed04g0716 850 Gene3D Endonuclease Chain A 240 478 - -
Sed04g0716 850 Pfam Phospholipase D C terminal 770 840 IPR024632 -
Sed04g0716 850 PANTHER PHOSPHOLIPASE D 35 838 IPR015679 GO:0004630(PANTHER)|GO:0005886(PANTHER)|GO:0009395(PANTHER)
Sed04g0716 850 Pfam C2 domain 38 164 IPR000008 -
Sed04g0716 850 SMART C2_3c 39 162 IPR000008 -
Sed04g0716 850 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 695 722 IPR001736 GO:0003824(InterPro)
Sed04g0716 850 Gene3D C2 domain 25 186 IPR035892 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed03g1297 Sed-Chr3:8285576 Sed04g0716 Sed-Chr4:5819666 0.00E+00 dispersed
Sed04g0716 Sed-Chr4:5819666 Sed04g2194 Sed-Chr4:35920028 0.00E+00 dispersed
Sed04g0715 Sed-Chr4:5793597 Sed04g0716 Sed-Chr4:5819666 0.00E+00 tandem
Sed04g0716 Sed-Chr4:5819666 Sed04g0717 Sed-Chr4:5819666 0.00E+00 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed04g0716 K01115 - csv:101208016 1540.4