Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed04g0717 ATGGCTGGTCGGGTTCTTGAAGCCTTGCCATTTAGGTCTCAACATGGTCAAGGTAATCAAGCTCTGCCCTTTTCATCTGCAAATCCATCATTGAAGTTCTTGCTCTTGCATGGTTATTTGGACATTTGGGTCAAGGAGGCCAAGAACCTGCCCAATATGGATATGTTTCATAAGACTCTTGGGGATGTGTTTTCAAAAGTGTCTTTTAAGAGTTCCAAGAACAGTTCTGGTGGGAAGAAGCCCCCAAAGGTGACTAGTGATCCCTATGTCACCATTTCTGTATCAGGGGCTGTGATAGCAAGAACTTTTGTGATTGATAATGATGAGAATCCTGCTTGGATGCAGCATTTTAATGTTCCTGTGGCTCATTATGGTGCTGAATTGCACTTTGTGGTTAAAGACCATGATGTTGTGGGATCACAAATCATTGGTGTTGTTGCAATTCCTGTGGAGCAATTGTACTCTGGAGCCTTGGTTGAGGGAACCTACCCAATCCTGAATAACAGTAGGAAGCCCTGCAAGCCCGGGGCAGTTTTGAGTTTGTCGATTCAGTATACTCCAGCGGAACAGGCAGCTATTTTTCGGGGTGGAATGTATGCATCTTCGGACCACCAGGGAGTTTCAGGCACATATTTTCCTCTTAGGAAGGGAGGTAAGCTTACATTGTATCAAGATGCCCATGTTGAGGATGGTTATCTTCCAACAGATTTTAGGCTTCATGGTGGGGTTGAATATGAACATAGGAGCTGTTGGGATGACATCTCTGAATCAATTAGACAGGCTCGTCGTTTGATCTATATTACAGGCTGGTCTGTATGCCACGGCGTTAGACTGGTTAGAGATGGAAAAGACAAAGAATGCATATTAGGGGACCTTCTCAAAGCCAAGTCCCAAGAAGGAGTAAGAGTGTTGCTTCTTATATGGGATGATCCAACTTCAACTAGTATGTTGGGATATAAAACGGTTGGGATGATGAATACAAACGATGAGGAGACTCGTCGGTTTTTCAAGCATTCTTCAGTCCAAGTGATTTTGTGCCCACGATCTGGTGGAAAAGGTCATAGTTGGATTAGAAAACAGGAAGCTGAAGCCATCTATACCCACCATCAAAAGACAGTTATTGTAGATGCTGATGCTGGCCATCACAAAAGAAAAATTGTAGCTTTTGTTGGAGGTCTCGATTTATGTTACGGTCGATATGATACTCCAAGACATCCTCTTTTCAAGACATTGCAAACTACGCACGTGGATGATTTTCACAACCCAAATTTTGTGGGACCAACTACGGGTTGTCCAAGAGAACCGTGGCATGATTTGCACTCTAAGATTGATGGTCCTGCCGCATACGATGTCCTTGCGAATTTTGAGGAGCGTTGGTTGAGAGCTTCGGAGCCTCATGGGCTTAAAAGGCTAAAAAAGTTAAATGAAGATGTATTGCTCAAAATTGAAAGAATTCCTGAAATTTTGGGAATTGATGTTGCTACTCGACTGTGTAACAATGATCCAGAAGGTTGGAACGTCCAGATTTTTCGTTCGATCGATTCCAATTCTGTGAAAGGATTTCCTGACAACCCAAAAGATGCTATAAGTAGAAACTTAGTATGTGGAAAGAATGTGATGATAGACATGAGTATACATTCAGCATATGTTAGTGCAATCCGTTCTGCTCAACGCTTCATTTATATTGAAAACCAGTACTTCCTTGGATCATCTTATAATTGGAGTGCTTACAAAGACTTAGGGGCAAATAACTTAATACCGATGGAAATTGCCCTTAAAATTGTGGAGAAAATCAAAGCCAAAGAAAGGTTTTCGGCGTACGTGGTTATCCCAATGTGGCCGGAAGGTGCTCCTACAAGCGCTCCTATTCAAAGAATTCTTTTCTGGCAGGACAATGCAAATGATGTATGA 1911 42.39 MAGRVLEALPFRSQHGQGNQALPFSSANPSLKFLLLHGYLDIWVKEAKNLPNMDMFHKTLGDVFSKVSFKSSKNSSGGKKPPKVTSDPYVTISVSGAVIARTFVIDNDENPAWMQHFNVPVAHYGAELHFVVKDHDVVGSQIIGVVAIPVEQLYSGALVEGTYPILNNSRKPCKPGAVLSLSIQYTPAEQAAIFRGGMYASSDHQGVSGTYFPLRKGGKLTLYQDAHVEDGYLPTDFRLHGGVEYEHRSCWDDISESIRQARRLIYITGWSVCHGVRLVRDGKDKECILGDLLKAKSQEGVRVLLLIWDDPTSTSMLGYKTVGMMNTNDEETRRFFKHSSVQVILCPRSGGKGHSWIRKQEAEAIYTHHQKTVIVDADAGHHKRKIVAFVGGLDLCYGRYDTPRHPLFKTLQTTHVDDFHNPNFVGPTTGCPREPWHDLHSKIDGPAAYDVLANFEERWLRASEPHGLKRLKKLNEDVLLKIERIPEILGIDVATRLCNNDPEGWNVQIFRSIDSNSVKGFPDNPKDAISRNLVCGKNVMIDMSIHSAYVSAIRSAQRFIYIENQYFLGSSYNWSAYKDLGANNLIPMEIALKIVEKIKAKERFSAYVVIPMWPEGAPTSAPIQRILFWQDNANDV 636
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 5819666 5838631 + Sed0020576.2 Sed04g0717 709320
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed04g0717 636 SUPERFAMILY Phospholipase D/nuclease 207 463 - -
Sed04g0717 636 CDD C2_plant_PLD 34 186 - -
Sed04g0717 636 PANTHER PHOSPHOLIPASE D 35 632 IPR015679 GO:0004630(PANTHER)|GO:0005886(PANTHER)|GO:0009395(PANTHER)
Sed04g0717 636 SUPERFAMILY Phospholipase D/nuclease 545 627 - -
Sed04g0717 636 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 364 399 IPR001736 GO:0003824(InterPro)
Sed04g0717 636 Gene3D Endonuclease Chain A 510 631 - -
Sed04g0717 636 ProSiteProfiles C2 domain profile. 19 163 IPR000008 -
Sed04g0717 636 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 36 187 IPR035892 -
Sed04g0717 636 Gene3D C2 domain 25 186 IPR035892 -
Sed04g0717 636 Pfam Phospholipase D Active site motif 366 399 IPR001736 GO:0003824(InterPro)
Sed04g0717 636 FunFam Phospholipase D delta 241 478 - -
Sed04g0717 636 Pfam C2 domain 38 164 IPR000008 -
Sed04g0717 636 Gene3D Endonuclease Chain A 240 478 - -
Sed04g0717 636 SMART C2_3c 39 162 IPR000008 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed04g0715 Sed-Chr4:5793597 Sed04g0717 Sed-Chr4:5819666 0.00E+00 dispersed
Sed04g0717 Sed-Chr4:5819666 Sed04g2194 Sed-Chr4:35920028 2.90E-254 dispersed
Sed04g0716 Sed-Chr4:5819666 Sed04g0717 Sed-Chr4:5819666 0.00E+00 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed04g0717 K01115 - csv:101208016 1139.02