Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed04g0721 ATGAAACTTTTGAAGACGAGGAACTTCCCAGATCGTCAGTACAGAGATGCCCTCGTTGGGTTCGGGCCCCAAAATACTCACTTTTTGTTAGAACTGAGACAACGACTTGATTCGAACAACGTATTAATTGGAACAGAGTTTGGGTACTTTGGGATTGCCACTCAAGATATATACAAATCTATGGAGAAAGCTCGAGGGAATGGCGCAGTTGTGATCCAGGAACCTCAAAAGGCGAACCAAAGCACGTTTGGGTTAGTGCAAGATCGTGATGGTTATAAGTTTAAGCTTATTCAAAGCTCCTCTCCACTTGGTGACCCACTTTGTGAAGTTATGCTCCATGTAGAAGATGTGAATCGCTCTATTAACTTCTATACAAAGGCATTGGGAATGAAGCTATTCAAGAGGCAAAGCAATTCAACAGGACAGATTGTTATGGGTACTTTGGGTTACGGAACAAATCAAAGTCAAACAACAGTGTTGCGGTTTGAAAACAGGAATAACATCCCACGTAATGATGGAAACGATGGCTATTCAATGCTGTATATTGGCACTAATGACGTAAACAAGAGTGCTGAAGCTGCTAAGGTAGTAATCAAAGAGCTTGGTGGAAATATAATCATCGAGCCAGGTCTCTTACCCAATATTAATGTCAAAATCACTGCGTTTATTGACCCTGAAAAATGGATTACTATTATGGTGGACAATAAAGATTACCAAAGAGGAACTCTTTAG 732 40.57 MKLLKTRNFPDRQYRDALVGFGPQNTHFLLELRQRLDSNNVLIGTEFGYFGIATQDIYKSMEKARGNGAVVIQEPQKANQSTFGLVQDRDGYKFKLIQSSSPLGDPLCEVMLHVEDVNRSINFYTKALGMKLFKRQSNSTGQIVMGTLGYGTNQSQTTVLRFENRNNIPRNDGNDGYSMLYIGTNDVNKSAEAAKVVIKELGGNIIIEPGLLPNINVKITAFIDPEKWITIMVDNKDYQRGTL 243
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 5859826 5864797 - Sed0023010.2 Sed04g0721 709324

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed04g0721 243 Gene3D - 104 241 IPR029068 -
Sed04g0721 243 PANTHER LACTOYLGLUTATHIONE LYASE 1 240 - GO:0004462(PANTHER)|GO:0005737(PANTHER)|GO:0019243(PANTHER)
Sed04g0721 243 SUPERFAMILY Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase 108 229 IPR029068 -
Sed04g0721 243 ProSiteProfiles Vicinal oxygen chelate (VOC) domain profile. 106 235 IPR037523 -
Sed04g0721 243 SUPERFAMILY Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase 2 101 IPR029068 -
Sed04g0721 243 ProSiteProfiles Vicinal oxygen chelate (VOC) domain profile. 1 99 IPR037523 -
Sed04g0721 243 Gene3D - 1 100 IPR029068 -
Sed04g0721 243 Pfam Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 110 214 IPR004360 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed04g0721 K01759 - - csv:101203268 384.415
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed04g0721 Sed-Chr4:5859826 Sed10g0602 Sed-Chr10:3984133 6.60E-50 dispersed
Sed04g0720 Sed-Chr4:5859826 Sed04g0721 Sed-Chr4:5859826 4.80E-138 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi10g80 . . Bda02g00935 . . . . . . Cmo18g00268 . . . . Sed01g1484 . Cpe10g00782 Bhi03g00588 Tan03g2302 Cmetu12g1671 . . . . . . . . . . . Cone1ag0008 . . . . Csa06g03511 Chy12g01070 . . Blo14g00006 . . . . . . Sed04g0721 . . . . . Car18g00277 . . Bhi08g01825 Tan01g1721 Cmetu06g0380 Lac10g0680 Hepe07g2040 . . Cla03g00437 Cam03g0463 Cec03g0449 Cco03g0459 Clacu03g0461 Cmu03g1067 Cre03g0753 . Csa01g01070 . Cme12g01496
Vvi19g530 . . . . . . . . . . . . . . . . . . . . . . . . Cla10g00494 Cam10g0486 Cec10g0504 Cco10g0489 Clacu10g0505 Cmu10g1332 Cre10g0735 . . . . . Csa03g00500 . Cme06g02233 . . . . . . . . Sed04g0721 . . . Cma16g00898 . Car16g00874 . . Bhi11g00600 Tan01g1721 Cmetu06g0380 . Hepe07g1266 . . . . . . . . . . . Chy06g01826 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008029 0 2 0 0 0 2 1 2 2 1 2 2 1 1 2 1 2 0 1 2 2 1 2 0 2 1 1 2 1 0 36