Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed04g0737 ATGAGAAGGGTTTGTTCTCATGCTCTTCTGTTCTTTGTTCTTCCGTTTCTTCTCGGGATTTTCTCTGCCATTGCTGAGAATGAGAATCACATTTTGCTTCAATTCAAACACGCTGTAACAGAGGATCCATTTGGGTTTTTGACCACTTGGACCGCCGCCCAGGATCATTGCCGGAATTTCACCGGCGTGTTCTGTAATCCCAATGGTTTTGTGGAGAAGATTGTTCTCTGGAACTTCAGCTTGGCTGGAACTTTGTCGCCGGCCTTGTCGGGGTTGAAGTTTTTGAGGACGTTGACATTGTTTGGGAATAGATTTACTGGCAATATTCCAATTGAGTATGGCCGCATTGTTACTCTCTGGAAGCTGAACTTGAGCTCCAATGCTTTGTCGGGTTTGGTCCCGGAGTTCGTCGGCGATTTGCCCAACATTCGGTTTCTGGATTTGTCTAGGAATGGCTTCACTGGGGAGATTCCTTCAGCTGTGTTCAGGAATTGTTTCAAGACTAGATTTGTTTCGTTTTCTCATAATAGAATTTCGGGTGTGATACCTTCTACAATTTTGAACTGTTTCAGCCTTGAAGGCTTGGATTTCTCTAACAATGATCTAACTGGGAGCATTCCTTTGCAACTTTGTAACATTCGAAGATTGGAGTATGTTTCTGTGAGAAGCAATGCACTTTCTGGGAGTGTGCAAGGCCAGTTCTCTGCTTGCCACAGCTTGAAACTTGTGGATCTGAGTAGCAATTTGTTTATCGGGTCGCCGCCATTCGAGGTTCTTGGATTCGAAAACATTACTTATTTTAATGTCTCTTATAACAAGTTTAGTGGGGGGATTGCAGAGGTTGTGGGCTGCAGTGTAAATCTGGAAGTTCTTGATGTTTCAGGGAATGGTTTGGATGGGGAGATCCCATTGAGCATTACAAAGTGTGGGAGTCTTAAAATATTGGATTTGGAATCTAACAAGCTGGTTGGGAAGATTCCTGCTGAACTTGCAGATTTGAAAATGCTTTTGGTGATTCGGTTGGGCTATAACTCAATCACCGGGACGGTTCCGGCCATTTTCGGGAACATGGAGCTACTTCAGGTTTTGAATTTGCACAGTCTCAAACTTGTTGGTGAGATTCCTGATGATATAACCAGTTGCAGGTTTCTTCTTGAGCTGGATATTTCTGGCAATGCATTTGAAGGGGGAATTCCCCAATCTCTTTATAACATGACATACCTTGAAATTCTTGATCTTCATGATAACCGTCTGAATGGAAGCATTCCGTCGACGCTTGGGAGCCTCTCGAAACTTCAGTTTCTGGATGTATCTCAAAACCTTCTATCTGGTTCAATACCACCTACTCTTGAAAATCTCACATTGCTGCACCATTTCAATGTCTCTTTCAATAACCTTTCGGGCATTATACCTCCTATAAAGACGATCCAAGATTTCGGGCCTTCTGCATTCTCAAACAATCCTTTGCTTTGTGGTGCTCCCTTGGATTCTTGCTCTGCACATAACACCATGGGCACGACTTCCACATCGAAGAAGCCAAAGATTCTTAGTCTATCTGCAATCATTGCTATTGTAGCAGCAGTTGTGATTCTTGTCGGGGTTTGCGTAATATCCATTTTGAACCTGATGGCTCGATCGAGGAAGGCAAGGAGCACCGTTATCATTGAGAGCACACCACTCGGTTCAACCAATTCTGGGGTCATAATTGGTAAGCTGGTTCTTTTCAGCAAAACATTGCCATCGAAGTACGAAGACTGGGAGGCAGGAACCCAAGCTTTGCTCGACAAGGAATGTCTAATAGGGGGTGGCTCAATCGGCACCGTTTACAAGACAAGTTTCGAGGGTGGAATCTCCATCGCTGTGAAGAAGTTGAACACTCTAGGGAGGATCAGAAGCCAAGATGAGTTCGAGACTGAAATTGGACTTTTGGGAAACATTAAGCACCCGAACTTGGTCGCTTTTCAGGGGTACTATTGGTCCTCGTCAATGCAGTTGATCCTATCGGAATTCATTGCAAACAGAAATCTATATGACAATCTGCACGGTCTGGGTTATGCAGGAACCAGCACAGGCATGGGCAATATAGAGTTACATTGGTCTAGGAGATACCAAATTGCAATTGGAACTGCTAGAGCTCTTGCTTATCTTCACCATGATTGTAGACCTTCAGTTCTTCACCTCAACATAAAATCAACTAACATACTGTTAGACGAAAACTACGAAGCTAAGTTATCCGACTATGGGTTGGGGAAGTTGCTTCCCGTTTTGGACAATTACATCCTAACCAAGTACCATACCGCTGTAGGCTATGTTGCACCGGAGTTGGCACAAAGTTTGAGAGTTAGTGAAAAATGCGACGTCTATAGTTTTGGAGTGATTCTATTGGAGTTGGTAACAGGGAGGAAGCCGGTCGAGAGTCCAAGAGCAAACCAGGTAGTAATTTTGTGTGAATATGTAAGGGAGTTGTTAGAAAGTGGTTGTGCTCCTGACTGTTTTGATAAAAACTTACGTGGCATTGTCGAAAACGAGCTCATCCAAGTGATGAAGTTGGGATTGATTTGTACATCTGAGATCCCTTCAAAGAGACCGAGCATGGCTGAGGTTGTTCAAGTTCTCGAGTCGATAAGAAACGGATTAGTATCATAG 2646 43.76 MRRVCSHALLFFVLPFLLGIFSAIAENENHILLQFKHAVTEDPFGFLTTWTAAQDHCRNFTGVFCNPNGFVEKIVLWNFSLAGTLSPALSGLKFLRTLTLFGNRFTGNIPIEYGRIVTLWKLNLSSNALSGLVPEFVGDLPNIRFLDLSRNGFTGEIPSAVFRNCFKTRFVSFSHNRISGVIPSTILNCFSLEGLDFSNNDLTGSIPLQLCNIRRLEYVSVRSNALSGSVQGQFSACHSLKLVDLSSNLFIGSPPFEVLGFENITYFNVSYNKFSGGIAEVVGCSVNLEVLDVSGNGLDGEIPLSITKCGSLKILDLESNKLVGKIPAELADLKMLLVIRLGYNSITGTVPAIFGNMELLQVLNLHSLKLVGEIPDDITSCRFLLELDISGNAFEGGIPQSLYNMTYLEILDLHDNRLNGSIPSTLGSLSKLQFLDVSQNLLSGSIPPTLENLTLLHHFNVSFNNLSGIIPPIKTIQDFGPSAFSNNPLLCGAPLDSCSAHNTMGTTSTSKKPKILSLSAIIAIVAAVVILVGVCVISILNLMARSRKARSTVIIESTPLGSTNSGVIIGKLVLFSKTLPSKYEDWEAGTQALLDKECLIGGGSIGTVYKTSFEGGISIAVKKLNTLGRIRSQDEFETEIGLLGNIKHPNLVAFQGYYWSSSMQLILSEFIANRNLYDNLHGLGYAGTSTGMGNIELHWSRRYQIAIGTARALAYLHHDCRPSVLHLNIKSTNILLDENYEAKLSDYGLGKLLPVLDNYILTKYHTAVGYVAPELAQSLRVSEKCDVYSFGVILLELVTGRKPVESPRANQVVILCEYVRELLESGCAPDCFDKNLRGIVENELIQVMKLGLICTSEIPSKRPSMAEVVQVLESIRNGLVS 881
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 5951007 5954205 - Sed0001037.1 Sed04g0737 709340
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed04g0737 881 SUPERFAMILY Protein kinase-like (PK-like) 596 873 IPR011009 -
Sed04g0737 881 FunFam Putative LRR receptor-like serine/threonine-protein kinase 571 670 - -
Sed04g0737 881 Pfam Protein kinase domain 598 870 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed04g0737 881 FunFam Leucine-rich repeat receptor protein kinase EMS1 182 277 - -
Sed04g0737 881 SMART LRR_typ_2 429 453 IPR003591 -
Sed04g0737 881 SMART LRR_typ_2 405 428 IPR003591 -
Sed04g0737 881 SMART LRR_typ_2 140 164 IPR003591 -
Sed04g0737 881 SMART LRR_typ_2 116 138 IPR003591 -
Sed04g0737 881 SMART LRR_typ_2 333 356 IPR003591 -
Sed04g0737 881 Pfam Leucine rich repeat N-terminal domain 27 66 IPR013210 -
Sed04g0737 881 FunFam Probable LRR receptor-like serine/threonine-protein kinase At1g12460 25 167 - -
Sed04g0737 881 Gene3D Phosphorylase Kinase; domain 1 570 670 - -
Sed04g0737 881 Pfam Leucine Rich Repeat 431 453 IPR001611 GO:0005515(InterPro)
Sed04g0737 881 Pfam Leucine Rich Repeat 191 212 IPR001611 GO:0005515(InterPro)
Sed04g0737 881 Pfam Leucine Rich Repeat 142 161 IPR001611 GO:0005515(InterPro)
Sed04g0737 881 Pfam Leucine Rich Repeat 287 309 IPR001611 GO:0005515(InterPro)
Sed04g0737 881 Pfam Leucine Rich Repeat 384 405 IPR001611 GO:0005515(InterPro)
Sed04g0737 881 Pfam Leucine Rich Repeat 408 429 IPR001611 GO:0005515(InterPro)
Sed04g0737 881 Pfam Leucine Rich Repeat 311 333 IPR001611 GO:0005515(InterPro)
Sed04g0737 881 SUPERFAMILY L domain-like 260 495 - -
Sed04g0737 881 Gene3D Ribonuclease Inhibitor 282 377 IPR032675 -
Sed04g0737 881 Gene3D Ribonuclease Inhibitor 24 183 IPR032675 -
Sed04g0737 881 ProSiteProfiles Protein kinase domain profile. 594 875 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed04g0737 881 Gene3D Transferase(Phosphotransferase) domain 1 672 879 - -
Sed04g0737 881 CDD STKc_IRAK 600 875 - -
Sed04g0737 881 SUPERFAMILY L domain-like 27 277 - -
Sed04g0737 881 FunFam probable LRR receptor-like serine/threonine-protein kinase IRK 671 881 - -
Sed04g0737 881 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 404 876 IPR050647 -
Sed04g0737 881 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 278 502 - -
Sed04g0737 881 Gene3D Ribonuclease Inhibitor 184 281 IPR032675 -
Sed04g0737 881 Gene3D Ribonuclease Inhibitor 382 499 IPR032675 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed04g0737 Sed-Chr4:5951007 Sed04g2966 Sed-Chr4:41078371 3.80E-79 dispersed
Sed04g0737 Sed-Chr4:5951007 Sed03g0337 Sed-Chr3:2012507 8.10E-82 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
78965 PF00069 Pkinase 1.10E-34 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed04g0737 - - - 0.0