Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed04g0750 ATGGAGGGCCGAGAAGGGGAGGCCGGAAATGGGGTTACGGCGGCGGCCGGATCGGATCCTCAAAGGCTTGACACGGCGGCTCGGGCACCGGAAGGTGGCGGTCCGGTGGGTTCTGCGGCGGCGGGAAAGAAGAAGAGGGGAAGACCGAGGAAGTATGGGCCAGACGGGAAGTTGAATGTGGCGGCGCTGTCCCCGAAGCCGATATCGGCGTCGGCTCCGGCACCGGGGGCGGTGATTGATTTCTCGGCGGAAAAGCGTGGGAAAGTGCGGCCGGCGATTTCCTTGACCAAAACCAAATATCAAGTGGAGAATTTAGGTGAATGGGTACCTTGTTCTGTTGGTGCTAATTTCACACCCCATATCATCACTGTCAACACTGGTGAGGACGTTACAATGAAGGTTCTCTCTTTTTCTCAACAAGGGCCTCGAGCCATCTGCATTCTCTCTGCTAACGGTGTGATTTCGAGCGTTACGCTTCGTCAACCCGATTCCTCTGGAGGAACATTAACATATGAGGGTCGTTTCGAGATATTGTCGTTGTCGGGATCGTTCATGCCGAGCGACAGTGTAGGAACGAAGAGCCGAACCGGTGGAATGAGCGTGTCCTTAGCAAGTCCAGACGGGCGTGTTGTTGGTGGTGGAATTGCCGGTTTGTTAGTAGCTGCAAGTCCTGTTCAAGTGGTAGTAGGAAGCTTTATATCAGGGAACCAACATGAACAGAAGTTAAAGAAGTCGAAACAGGACGTCATATTACCGGTTTCTGCTCTTCCAATCTCGAGCACTGAACCGAATTCGTACACGACAACGACCACGCCATCATCGTTTCATGCTGAAACTTGGCCACATTTGGTTCCAGATTTGAGAAGTCAGCCAACTGATATCAATGTCTCTTTAACAAGGAGTTAG 906 52.43 MEGREGEAGNGVTAAAGSDPQRLDTAARAPEGGGPVGSAAAGKKKRGRPRKYGPDGKLNVAALSPKPISASAPAPGAVIDFSAEKRGKVRPAISLTKTKYQVENLGEWVPCSVGANFTPHIITVNTGEDVTMKVLSFSQQGPRAICILSANGVISSVTLRQPDSSGGTLTYEGRFEILSLSGSFMPSDSVGTKSRTGGMSVSLASPDGRVVGGGIAGLLVAASPVQVVVGSFISGNQHEQKLKKSKQDVILPVSALPISSTEPNSYTTTTTPSSFHAETWPHLVPDLRSQPTDINVSLTRS 301
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 6072630 6076950 + Sed0022462.1 Sed04g0750 709353
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed04g0750 301 SUPERFAMILY AF0104/ALDC/Ptd012-like 116 240 - -
Sed04g0750 301 CDD DUF296 118 232 IPR005175 -
Sed04g0750 301 Gene3D - 119 250 - -
Sed04g0750 301 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 32 262 IPR039605 GO:0003680(InterPro)
Sed04g0750 301 Pfam Plants and Prokaryotes Conserved (PCC) domain 119 232 IPR005175 -
Sed04g0750 301 FunFam AT-hook motif nuclear-localized protein 1-like 119 249 - -
Sed04g0750 301 ProSiteProfiles PPC domain profile profile. 114 259 IPR005175 -
Sed04g0750 301 MobiDBLite consensus disorder prediction 1 60 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed04g0750 Sed-Chr4:6072630 Sed12g0242 Sed-Chr12:1406829 1.40E-70 dispersed
Sed04g0750 Sed-Chr4:6072630 Sed05g0863 Sed-Chr5:6958647 4.90E-103 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed04g0750 - - - 0.0