Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed04g0765 ATGAGACCGTTCGTCAGATTTCCAAATTTATTGCACAAAATCCGAAACCAACCTGTAGAATTCATTACATGTTTATACTCCAAATCCAAACGCCAATTCAGTTCCATATCCTCCGTTGCTATTTTCTGGGATTTGGATAATAAACCACCCAAATCCTTACCGCCTTACGAAGCTGCTGTTAAGCTCAAAGCTGCAGCCGCTTCCTTCGGCGTGGTTCGGCACATGGCGGCGTATGCGAATCGGCATGCGTTTAGCTACGTGCCGCAGGTAGTTAGGGAGAGGAGAAGGGAGAGGAAGATGTTGAATCAATTGGAGAGGAAGGGCGTGACCAAATCGATCGAGCCGTATCTGTGTCGAGTTTGTGGGAGGAATTTTTATACAAATGAGAAGTTAGTGTATCATTTTAAGCAAATTCATGAAAGTGAGCATAGGAAGAGGTTGAATCAGATTGAATCTGCTAAGGGTAGTAGAAGAGTGAAGTTGCTTGCCAAGTATTCGATGAAAATACACAAATATAAGAATGCTGCAATGGATGTCTTGACTCCAAAAGTGGGATATGGGTTAGCAGATGAGTTGAAGAGGGCAGGGTTTTTTGTGAAAACCGTATCGGATAAGCCGGAAGCGGCTGATGTAGAATTGAGAAAGGACATGGTTGAGATTATGGATAGGAGAAGAGCAGAGTGCTTGGTTCTTGTATCAGATGATTCAGATTTTGTGAATGTTTTGAAGGAGGCCAAATTGAGATGCCTTAGGACAGTTGTTGTTGGGGATGTTAATGATGGGCCATTGAAGAGAAATGCTGATACTGGGTTTTCTTGGAAGGAGATTTTGATGGGGAAGGCTAAAAAGGAGGCTGTCTCTGTTGTGGGGAAATGGAAGGATAGGGATGTTTTGAAGAGATTGGAGTGGACATACAATCCTCAATTGGAAAAGAAAGTGTTTGGTTTGGACGAAGATGTTGAAGGTCCTATTGAGGAGGGACATTGTGAGAATATGCAAAATGATGACAGTAGTGCCTGGTGGGATCTTAGCTCTGATACTGAAAATGTTTCTTCAGGAACATGTAAATGA 1071 42.67 MRPFVRFPNLLHKIRNQPVEFITCLYSKSKRQFSSISSVAIFWDLDNKPPKSLPPYEAAVKLKAAAASFGVVRHMAAYANRHAFSYVPQVVRERRRERKMLNQLERKGVTKSIEPYLCRVCGRNFYTNEKLVYHFKQIHESEHRKRLNQIESAKGSRRVKLLAKYSMKIHKYKNAAMDVLTPKVGYGLADELKRAGFFVKTVSDKPEAADVELRKDMVEIMDRRRAECLVLVSDDSDFVNVLKEAKLRCLRTVVVGDVNDGPLKRNADTGFSWKEILMGKAKKEAVSVVGKWKDRDVLKRLEWTYNPQLEKKVFGLDEDVEGPIEEGHCENMQNDDSSAWWDLSSDTENVSSGTCK 356
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 6171665 6173046 + Sed0011330.1 Sed04g0765 709368
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed04g0765 356 ProSiteProfiles Zinc finger C2H2 type domain profile. 116 144 IPR013087 -
Sed04g0765 356 PANTHER C2H2-TYPE DOMAIN-CONTAINING PROTEIN 35 352 - -
Sed04g0765 356 SUPERFAMILY beta-beta-alpha zinc fingers 113 142 IPR036236 -
Sed04g0765 356 Gene3D - 29 275 - -
Sed04g0765 356 ProSitePatterns Zinc finger C2H2 type domain signature. 118 139 IPR013087 -
Sed04g0765 356 Pfam NYN domain 188 268 IPR021139 GO:0004540(InterPro)
Sed04g0765 356 MobiDBLite consensus disorder prediction 326 356 - -
Sed04g0765 356 CDD PIN_LabA-like 126 257 - -
Sed04g0765 356 MobiDBLite consensus disorder prediction 333 356 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g2683 Sed-Chr1:21506928 Sed04g0765 Sed-Chr4:6171665 1.70E-58 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
38069 PF01936 NYN 1.20E-09 CL0280 Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed04g0765 - - - 0.0