Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed04g0765 | ATGAGACCGTTCGTCAGATTTCCAAATTTATTGCACAAAATCCGAAACCAACCTGTAGAATTCATTACATGTTTATACTCCAAATCCAAACGCCAATTCAGTTCCATATCCTCCGTTGCTATTTTCTGGGATTTGGATAATAAACCACCCAAATCCTTACCGCCTTACGAAGCTGCTGTTAAGCTCAAAGCTGCAGCCGCTTCCTTCGGCGTGGTTCGGCACATGGCGGCGTATGCGAATCGGCATGCGTTTAGCTACGTGCCGCAGGTAGTTAGGGAGAGGAGAAGGGAGAGGAAGATGTTGAATCAATTGGAGAGGAAGGGCGTGACCAAATCGATCGAGCCGTATCTGTGTCGAGTTTGTGGGAGGAATTTTTATACAAATGAGAAGTTAGTGTATCATTTTAAGCAAATTCATGAAAGTGAGCATAGGAAGAGGTTGAATCAGATTGAATCTGCTAAGGGTAGTAGAAGAGTGAAGTTGCTTGCCAAGTATTCGATGAAAATACACAAATATAAGAATGCTGCAATGGATGTCTTGACTCCAAAAGTGGGATATGGGTTAGCAGATGAGTTGAAGAGGGCAGGGTTTTTTGTGAAAACCGTATCGGATAAGCCGGAAGCGGCTGATGTAGAATTGAGAAAGGACATGGTTGAGATTATGGATAGGAGAAGAGCAGAGTGCTTGGTTCTTGTATCAGATGATTCAGATTTTGTGAATGTTTTGAAGGAGGCCAAATTGAGATGCCTTAGGACAGTTGTTGTTGGGGATGTTAATGATGGGCCATTGAAGAGAAATGCTGATACTGGGTTTTCTTGGAAGGAGATTTTGATGGGGAAGGCTAAAAAGGAGGCTGTCTCTGTTGTGGGGAAATGGAAGGATAGGGATGTTTTGAAGAGATTGGAGTGGACATACAATCCTCAATTGGAAAAGAAAGTGTTTGGTTTGGACGAAGATGTTGAAGGTCCTATTGAGGAGGGACATTGTGAGAATATGCAAAATGATGACAGTAGTGCCTGGTGGGATCTTAGCTCTGATACTGAAAATGTTTCTTCAGGAACATGTAAATGA | 1071 | 42.67 | MRPFVRFPNLLHKIRNQPVEFITCLYSKSKRQFSSISSVAIFWDLDNKPPKSLPPYEAAVKLKAAAASFGVVRHMAAYANRHAFSYVPQVVRERRRERKMLNQLERKGVTKSIEPYLCRVCGRNFYTNEKLVYHFKQIHESEHRKRLNQIESAKGSRRVKLLAKYSMKIHKYKNAAMDVLTPKVGYGLADELKRAGFFVKTVSDKPEAADVELRKDMVEIMDRRRAECLVLVSDDSDFVNVLKEAKLRCLRTVVVGDVNDGPLKRNADTGFSWKEILMGKAKKEAVSVVGKWKDRDVLKRLEWTYNPQLEKKVFGLDEDVEGPIEEGHCENMQNDDSSAWWDLSSDTENVSSGTCK | 356 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 6171665 | 6173046 | + | Sed0011330.1 | Sed04g0765 | 709368 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed04g0765 | 356 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 116 | 144 | IPR013087 | - | |
Sed04g0765 | 356 | PANTHER | C2H2-TYPE DOMAIN-CONTAINING PROTEIN | 35 | 352 | - | - | |
Sed04g0765 | 356 | SUPERFAMILY | beta-beta-alpha zinc fingers | 113 | 142 | IPR036236 | - | |
Sed04g0765 | 356 | Gene3D | - | 29 | 275 | - | - | |
Sed04g0765 | 356 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 118 | 139 | IPR013087 | - | |
Sed04g0765 | 356 | Pfam | NYN domain | 188 | 268 | IPR021139 | GO:0004540(InterPro) | |
Sed04g0765 | 356 | MobiDBLite | consensus disorder prediction | 326 | 356 | - | - | |
Sed04g0765 | 356 | CDD | PIN_LabA-like | 126 | 257 | - | - | |
Sed04g0765 | 356 | MobiDBLite | consensus disorder prediction | 333 | 356 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed01g2683 | Sed-Chr1:21506928 | Sed04g0765 | Sed-Chr4:6171665 | 1.70E-58 | dispersed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
38069 | PF01936 | NYN | 1.20E-09 | CL0280 | Sed | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed04g0765 | - | - | - | 0.0 |