Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed04g0789 ATGGATGCTGGTGGTGGCGCCGTGCACAATCGCACTGTGGAAGATGTTTTCACTGATTTCAAAGGCCGGAGAACCGGCGTCATCAAAGCCCTCACCCTAGATGTTGAAAATTTCTATCAACAATGTGATCCTGAGAAGGAAAATCTATGCTTGTATGGATTTCCAAATGAAGTATGGGAAGTCAATTTACCTGCTGAAGAAGTACCTCCAGAAATTCCAGAGCCGGCGTTGGGCATTAATTTTGCAAGAGATGGCATGAACGAAAGGGATTGGTTGGCTTTGGTTGCTGTCCATAGTGATTCTTGGTTGCTCTCCGTTGCCTTCTATTTTGGTGCAAGATTTGGATTTGATAAAGCTGATAGGAGGCGGCTTTTTAATATGATAAACGATTTGCCAACCGTATTTGAGGTAGTAACAGGTGTTGCAAAGAAACCAGTGAAGGAAAAGTCATCAAGTGCTACTGCTAATGGTAGCAGATCCAAACCAAGCTTTAAAACGGAACACGAGATTCATGGAATATATGGGAGGCAACCGCAGACACGGGAGGATGTAGAGGGCAGGTCTGAAGAAGAAGGAGAAGAAGAAGAAGAAGAGGAAGAAGAAGACGAGCACGGTGACACGTTGTGCGGGGCATGCGGGGAGAATTACGCATCTGATGAATTTTGGATTTGCTGTGATATCTGTGAGAAATGGTTCCATGGAAAATGTGTTAGAATAACTCCAGCAAAAGCAGAGCACATTAAGCAGTACAAATGCCCATCCTGCAACAACCACAAGAGAGGCCGCATTTAA 792 44.57 MDAGGGAVHNRTVEDVFTDFKGRRTGVIKALTLDVENFYQQCDPEKENLCLYGFPNEVWEVNLPAEEVPPEIPEPALGINFARDGMNERDWLALVAVHSDSWLLSVAFYFGARFGFDKADRRRLFNMINDLPTVFEVVTGVAKKPVKEKSSSATANGSRSKPSFKTEHEIHGIYGRQPQTREDVEGRSEEEGEEEEEEEEEDEHGDTLCGACGENYASDEFWICCDICEKWFHGKCVRITPAKAEHIKQYKCPSCNNHKRGRI 263
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 6533395 6536995 + Sed0017049.1 Sed04g0789 709392
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed04g0789 263 SUPERFAMILY FYVE/PHD zinc finger 197 259 IPR011011 -
Sed04g0789 263 Pfam PHD-finger 209 255 IPR019787 -
Sed04g0789 263 MobiDBLite consensus disorder prediction 187 205 - -
Sed04g0789 263 ProSiteProfiles Zinc finger PHD-type profile. 206 258 IPR019787 -
Sed04g0789 263 PANTHER CPG BINDING PROTEIN 10 259 IPR045104 GO:0000976(PANTHER)|GO:0003712(PANTHER)|GO:0005634(PANTHER)|GO:0006355(InterPro)|GO:0042393(InterPro)
Sed04g0789 263 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 198 257 IPR013083 -
Sed04g0789 263 MobiDBLite consensus disorder prediction 162 186 - -
Sed04g0789 263 ProSitePatterns Zinc finger PHD-type signature. 209 255 IPR019786 -
Sed04g0789 263 FunFam PHD finger alfin-like protein 201 257 - -
Sed04g0789 263 Coils Coil 181 201 - -
Sed04g0789 263 Pfam Alfin 12 139 IPR021998 GO:0006355(InterPro)|GO:0042393(InterPro)
Sed04g0789 263 MobiDBLite consensus disorder prediction 146 206 - -
Sed04g0789 263 CDD PHD_AL_plant 208 257 IPR044104 -
Sed04g0789 263 SMART PHD_3 208 256 IPR001965 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed04g0789 Sed-Chr4:6533395 Sed11g0863 Sed-Chr11:20748200 2.00E-100 dispersed
Sed04g0789 Sed-Chr4:6533395 Sed09g1666 Sed-Chr9:40082862 7.70E-121 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
38071 PF12165 Alfin 5.60E-68 No_clan Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed04g0789 K26274 - csv:101222322 431.409