Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed04g0794 ATGGCTGAAGAAGAAACCTCCAGCGAATCCTTCACCGCCACCCACACGGTGATCGCCATCAACAGGGACAAGAACAGCCAATACGCGGTTAAATGGGCCGTGGAGCATCTGTTCAACAGGAATGTCACCGGCGATTGCATCCTCATCCATGTTCGCAGCCAGAGCTTGCATCCTCAGGATGCGGATATGGTTCCTAAGGAGTTTCGTCCGCCGACCGATGCCGAGTTGCATCAGTTTTTCCTTCCCTTCAGAGGATTCTGTGCACGAAAAGGAATAGTTGCAAAGGAGATTATTATCCACGACATTGATGTTCCAAGTGCACTTATCGATTATATAAGTAAACAGTCCATCAGCAATATTGTTGTGGGTGCTTCCAGCCGAAATGCTATTATGAGGAAGTTCAAACATCCAGATGTACCGACGTGTTTGCTCAAATCAACTCCGGAATCATGTTCTGTATATGTCATAGCTAGAGGAAAAGTTCATGCTAAGAGATTGAGAAAGCGACATACTTCACTAACTGATGGGACAGAAAGTCCATATGGAACTCCACACATCGACAAGTTTCTATCAACACTACAAAACTCAGGATTCTCTGAAGATAAAAGCAGGCATCATTCTGGAAGCAGTGTTGATTCACTGTCAATCAGTAGTGACTTTTCAGAGATTCTAAGTTTCAAATCAATTGAAACATCCTCTGAGAACCCAGATTTTTCCTTAACCTCCTCGGAGATTAATTCGAAGAGCTTTGGTTCTTCTAACACCTCAGCTTCCTTTGAATCTGAGATGAGAAAGTTGAAGTATGAACTCAAACATACAATGGAAATGTATGACTCAGTTTGTCAGGAAGCTGTAGTAGCAAATCACCAGGCAAAAGAACTCGAACAATTAAAGATAGAAGAGAAAAAGTCTGACGGAGGTAAATCTGCAGAAGAGGTGTTAATAGCATTGGCAGAGGTTGAGAAGCAGAAGAACAAGGCTGCGACGGAAGCAGCTCTAATGGCACAAAAGCTGGCAGAATTAGAGACCCAGAAAAAACGAAATATTGCTGAAAAAAAGGCTAGGATTGAGGCGGAGGAGAAGCAGAAATCAATTGATTTATTTGAGCGTAGTAATATCTGCTATAAACGCTACAAAATTGATGAGATCGAAGCTGCAACAGATCATTTTAATGAGTCAAAAAAGATTGGTGAAGGCGGATATGGACCTGTTTACCAAGCCTTACTCCATGATACTTCTGTTGCCATTAAGATCTTGAGACCAGATAGATCTCATGGGCTGAAACAATTCCAGCAAGAGATTGAGGTTTTAAGCCGCATGAGGCATCCACACATGGTTCTTCTCTTAGGTGCCTGCCCAGAATATGGTTGCCTTGTTTATGAATTTATGGAAAATGGGAGCTTAGAAGACCGTCTTTTCCGGAAAGACAACACTCCTTCAATCCCTTGGAGAACTCGTTTCAGGATAGCTTCTGATATCGCCACTGCCCTTCTCTTCCTTCATCAAATGAAGCCAGAACCCGTGGTGCATCGTGATCTCAAGCCAGCTAACATTCTCTTAGATAGCAACTACGTGAGCAAAATAGGCGATGTGGGCTTGGCCAGGCTAGTTCCACCATCGGTTGCCGATAGTGTTACTCAATATCACATGACAGCTGCAGCTGGAACCTTCTGTTACATTGATCCAGAATACCAACAAACAGGATTGCTGGGAGTGAAATCAGATATTTACTCATTTGGTGTTCTTCTACTCCAACTCATCACTGCAAGGTCACCGATGGGTCTTACATACCAGGTTGAGGAGGCCATTGAACACGGTACATTTTCACAGGTTCTTGATCGTACGATTACAGATTGGCCTGTTGAAGATACTCGTGGCCTCGCTCAATTAGCCCTGCAGTGCTGCGAGCTTAGGAAAAGAGATAGACCCGACCTCTGCAAAGTTATATTGCCAGAACTGGTTAGGCTAAAAAATCTGGGATTGAGCGAACCACCACCCGAAGGCAAGCTTCCAAGTTTTGGCGATTCAACTCCAACTTTGGAGGGATCAGAAAATGAGGCGGAATGA 2067 43.88 MAEEETSSESFTATHTVIAINRDKNSQYAVKWAVEHLFNRNVTGDCILIHVRSQSLHPQDADMVPKEFRPPTDAELHQFFLPFRGFCARKGIVAKEIIIHDIDVPSALIDYISKQSISNIVVGASSRNAIMRKFKHPDVPTCLLKSTPESCSVYVIARGKVHAKRLRKRHTSLTDGTESPYGTPHIDKFLSTLQNSGFSEDKSRHHSGSSVDSLSISSDFSEILSFKSIETSSENPDFSLTSSEINSKSFGSSNTSASFESEMRKLKYELKHTMEMYDSVCQEAVVANHQAKELEQLKIEEKKSDGGKSAEEVLIALAEVEKQKNKAATEAALMAQKLAELETQKKRNIAEKKARIEAEEKQKSIDLFERSNICYKRYKIDEIEAATDHFNESKKIGEGGYGPVYQALLHDTSVAIKILRPDRSHGLKQFQQEIEVLSRMRHPHMVLLLGACPEYGCLVYEFMENGSLEDRLFRKDNTPSIPWRTRFRIASDIATALLFLHQMKPEPVVHRDLKPANILLDSNYVSKIGDVGLARLVPPSVADSVTQYHMTAAAGTFCYIDPEYQQTGLLGVKSDIYSFGVLLLQLITARSPMGLTYQVEEAIEHGTFSQVLDRTITDWPVEDTRGLAQLALQCCELRKRDRPDLCKVILPELVRLKNLGLSEPPPEGKLPSFGDSTPTLEGSENEAE 688
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 6629659 6635396 + Sed0014266.1 Sed04g0794 709397
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed04g0794 688 ProSitePatterns Serine/Threonine protein kinases active-site signature. 508 520 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed04g0794 688 Coils Coil 310 362 - -
Sed04g0794 688 SUPERFAMILY Protein kinase-like (PK-like) 370 649 IPR011009 -
Sed04g0794 688 Gene3D HUPs 3 157 IPR014729 -
Sed04g0794 688 ProSiteProfiles Protein kinase domain profile. 390 654 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed04g0794 688 FunFam Adenine nucleotide alpha hydrolase-like domain kinase 362 462 - -
Sed04g0794 688 MobiDBLite consensus disorder prediction 233 256 - -
Sed04g0794 688 PANTHER OS02G0152300 PROTEIN 18 661 IPR051348 -
Sed04g0794 688 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 15 155 - -
Sed04g0794 688 Gene3D Phosphorylase Kinase; domain 1 369 462 - -
Sed04g0794 688 CDD STK_N 16 159 - -
Sed04g0794 688 Gene3D Transferase(Phosphotransferase) domain 1 463 659 - -
Sed04g0794 688 Pfam Universal stress protein family 16 132 IPR006016 -
Sed04g0794 688 Pfam Protein tyrosine and serine/threonine kinase 393 648 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed04g0794 688 SMART serkin_6 390 654 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed04g0794 688 MobiDBLite consensus disorder prediction 661 688 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed04g0794 Sed-Chr4:6629659 Sed09g1671 Sed-Chr9:40101459 2.5e-312 dispersed
Sed04g0794 Sed-Chr4:6629659 Sed09g1670 Sed-Chr9:40101459 2.5e-312 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
78968 PF07714 PK_Tyr_Ser-Thr 1.90E-41 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed04g0794 - - - 0.0