Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed04g0796 ATGGCAGGTTTAGCTCCAGAAGGTTCCCAATTTGATTCTCGCCAATTTGATGCTAAAATGAATGAGATTCTTTTATCCGAAGGACAGGATTTTTTTACCTCATATGATGAAGTTTTTGAAACTTTTGATTCAATGGGGCTGCTAGAGAACCTCCTTAGAGGCATATATGCCTATGGTTTTGAGAAGCCATCTGCAATTCAGCAAAGGGGTATTGTTCCTTTCTGCAAGGGCCTTGATGTGATTCAACAGGCTCAGTCTGGAACCGGAAAAACTGCAACCTTCTGCTCTGGGGTACTGCAGCAACTTGATTATGATCTAGTCCAGTGTCAGGCTTTAGTTTTGGCACCTACTAGGGAGCTTGCTCAACAAATTGAGAAGGTTATGAGAGCTCTTGGAGACTATCTTGGTGTTAAGGTTCATGCTTGTGTTGGAGGAACAAGCGTCCGTGAGGATCAGCGTATACTTCAAGCTGGTGTTCATGTTGTAGTTGGAACACCTGGTCGTGTGTTTGACATGTTGAGGAGACAGTCTCTTCGCCCAGATGCTATAAAGATGTTTGTATTGGATGAAGCCGATGAAATGCTTTCTCGCGGTTTTAAAGATCAGATTTATGACATTTTCCAGCTTTTGCCATCCAAAATTCAAGTTGGTGTCTTCTCAGCCACAATGCCACCAGAAGCTTTGGAGATCACTAGGAAGTTCATGAACAAGCCAGTCAGAATCTTGGTAAAACGTGATGAGCTTACTTTAGAAGGTATCAAACAATTTTACGTAAATGTCGATAAAGAAGATTGGAAGCTTGAAACTCTTTGTGATCTTTATGAGACTCTGGCTATCACTCAGAGTGTCATCTTTGTTAACACACGTCGCAAGGTTGACTGGCTTACTGACAAGATGAGAAGCCGAGACCATACCGTATCTGCCACCCATGGAGACATGGACCAGAACACTAGAGATATAATTATGCGGGAGTTTCGGTCTGGCTCTTCTCGTGTTCTTATCACAACTGATTTGCTGGCTCGTGGAATTGATGTTCAGCAAGTCTCCCTTGTCATAAATTTTGATTTGCCAACTCAACCAGAAAACTACCTTCATCGTATTGGTCGAAGTGGGCGTTTCGGAAGGAAGGGTGTCGCCATCAATTTTGTTACAGCGGATGATGAGAGAATGCTTTTTGATATTCAGAAGTTCTATAATGTGGTCGTTGAGGAGCTGCCAGCTAATGTTGCCGATCTTCTATGA 1242 42.83 MAGLAPEGSQFDSRQFDAKMNEILLSEGQDFFTSYDEVFETFDSMGLLENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGVLQQLDYDLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDAIKMFVLDEADEMLSRGFKDQIYDIFQLLPSKIQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVDKEDWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINFDLPTQPENYLHRIGRSGRFGRKGVAINFVTADDERMLFDIQKFYNVVVEELPANVADLL 413
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 6641767 6644671 + Sed0008320.1 Sed04g0796 709399
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed04g0796 413 SMART helicmild6 293 374 IPR001650 -
Sed04g0796 413 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 71 241 IPR014001 -
Sed04g0796 413 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 37 399 - GO:0003723(PANTHER)|GO:0003724(PANTHER)
Sed04g0796 413 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 252 413 IPR001650 -
Sed04g0796 413 SMART ultradead3 59 256 IPR014001 -
Sed04g0796 413 FunFam Eukaryotic initiation factor 4A-II 28 247 - -
Sed04g0796 413 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 109 394 IPR027417 -
Sed04g0796 413 CDD SF2_C_DEAD 253 383 - -
Sed04g0796 413 Pfam Helicase conserved C-terminal domain 266 374 IPR001650 -
Sed04g0796 413 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 187 195 IPR000629 -
Sed04g0796 413 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 40 68 IPR014014 GO:0003724(InterPro)
Sed04g0796 413 Gene3D - 249 413 IPR027417 -
Sed04g0796 413 CDD DEADc_EIF4A 45 242 - -
Sed04g0796 413 Pfam DEAD/DEAH box helicase 65 227 IPR011545 GO:0003676(InterPro)|GO:0005524(InterPro)
Sed04g0796 413 Gene3D - 30 248 IPR027417 -
Sed04g0796 413 FunFam Eukaryotic initiation factor 4A-III 248 413 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed04g0796 Sed-Chr4:6641767 Sed06g0066 Sed-Chr6:402147 4.20E-230 dispersed
Sed04g0796 Sed-Chr4:6641767 Sed09g1673 Sed-Chr9:40115893 9.90E-232 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed04g0796 K03257 - csv:101221456 794.653