Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed04g0798 ATGAAAATCGAGTCGATGAGACGGGGAAGAATAAGGGAGAAGATCCGCCGAAGCAATCTCTATACATTCGCTTGCCTCCGTGCAGAGAGTGCCCGTGAGGCTGACAATTCGCATCCTTTAACGGGGCCTGGTTTCTCACGCATTGTCTGTTGTAACCAACCTCATCTCCATGATAAGAAGCCATTGAAATACAAATCCAATTACATATCCACCACCAAGTATAATGTTCTTACTTTCTTGCCTAAGGCTCTCTTTGAGCAATTCCGGAGGGTTGCCAATGTGTACTTTCTTTTGGCTGCTTTGTTATCGCTCACACCAGTCGCCCCATTTTCGGCCATGAGCATGATTGCTCCTCTCGTGTTTGTTGTTGGGCTCAGTATGGCGAAAGAAGCTCTTGAGGACTGGAGCCGATTTATGCAGGATATGAAAGTTAATATCAGGAAAGTGACTGTTCATAAAGGGGGAGGTGTTTTTGGTCATAGAGCTTGGCACAAGATTCGAGTAGGAGATATCTTGAAAATTGAGAAGGATAAGTTCTTTCCGGCCGATCTACTTCTCCTGTCATCATGCTATGAGGATGGTATATGTTATGTAGAAACTATGAATTTGGATGGTGAGACTAATCTCAAAGTAAAGAGATCCTTGGAAGTAACCTTGCCGTTGGATAATGATGCATCTTTCAAAGATTTTACTGCAAAAATTTACTGTGAAGATCCAAACCCGAATCTTTACACCTTTGTAGGTAACTTTGAATATGATAACCAGATTCATCCTCTTGATCCTAGTCAGATTCTCCTTAGAGATTCAAAATTGAGGAATACAGCTTATGCCTATGGGGTGGTGATATTTACTGGACATGAAAGTAAAGTCATGCAGAATGCAACAAAATCTCCTTCCAAAAGAAGTGGAATAGAGAGAAAAATGGACAAAATTATTTACATCCTTTTTTCTCTCCTTGTATTGATTTCATCGATGAGCTCAATAGGTTTTGCTGTGAAGACAAAGTACCAAATGACAGACTGGTGGTATTTACAAACTACGGGTGACGATCCACTATACAACCCTCAAAAGCCAACCTTATCAGGGCTCATGCATTTGATCACCGCCCTTATACTCTATGGATATTTGTTACCGATCTCACTATATGTTTCCATCGAGGTTGTTAAGGTTTTGCAAGCTTCCTTCATTAACCAAGATATTAACATGTATTGTGATGAAAGTGGCAATACAGCTCGAGCTCGGACTTCAAATTTGAATGAGGAGTTGGGTCAGGTAGACACAATCCTATCTGACAAAACTGGCACTTTGACTTGCAATCAGATGGACTTTCTGAAATGCTCCATTGCTGGTACTCAATATGGAGTTAAAGCTAGTGAGGTTGAACTTGCCGCTGCAAGGCAGATGGCATATGACCTTGAGGAGGAGCAGGATTCAGAATATTCAGTTCCTGTTGAAAAAATTAGCCGACAACCTTCCTCCTCAAGTAGCAGAAGAGGATCAGAGATCGAACTGGAGACTGTTGTTACTTCAGGTGATGTCAAAGAGCAGAAGTCTGCCATAAAGTATTTTGGTTTCGAGGACAGCCGTCTGACAGGTGGAAACTGGTTGAATGAGCCCAAGCCTGATGTTCTTCTATTGTTCTTCCGAATCTTAGCGATTTGTCACACTGCAATTCCTGAGCAGAATGAGGAGACTGGTGCTTATACATATGAAGCCGAGTCCCCCGATGAAGGTGCTTTTCTTGTTGCAGCAAGAGAATTCGGGTTTGAGTTTTGTAAGAGAACACAATCTACTTGTGTTGTCCGTGAAAGATATCCTTCACCTAACCAAGTAATTGAAAGGGAATACAAAATTTTGAATCTCTTGGATTTCACAAGCAAGAGAAAGAGAATGTCTGTAATTATTAGGGACGAGGATGGCCAGATTATTCTTCTTTGCAAAGGGGCTGATAGCATCATCTTCGACCGACTAGCAAAGAACGGAAGAACGTACGAGGAAGCAACCACTAGGCATTTGAATGAATATGGAGAAGCTGGGTTGCGTACTTTGACACTTGCTTACAGGAAGCTTGAGGAGTCTGAATATACTGAATGGAACAATGAGTTTCAGAAGGCTAAGACAGCCATTGGAGGAGAGAGAGATGCAATGCTCGAGCGAGTGTCCGACGTCATGGAACGAGAATTAACTCTTGTTGGTGCTACTGCTGTGGAGGACAAGTTACAGAATGGGGTGCCCCAATGCATAGACACACTTGCACAAGCAGGCCTTAAGATCTGGGTTCTGACAGGAGATAAGATGGAAACTGCCATCAACATAGGATATGCATGCAGTTTACTCCGACAGGGAATGAAGCAGATCTGCATATCAGCAAACTCAGATGCATTAGTTCAGGAAGGCAAACAGGCCACGAAAGATAATATTTTGAACCAAATCACCAACGCTTCACAAAACATCAAGCTGGAGAAGGATCCACATGCTGCATTTGCTTTAATCATTGATGGGAAGACTCTAACCTATGCTCTTGAGGATGATATGAAGCTTCAATTTCTCGAACTCGCTGTTGATTGTGCCTCGGTCATTTGCTGTCGCGTCTCTCCCAAGCAGAAGGCCCTGGTTGTTAGGTTAGTGAAAGAAGGTACTGGTAAAACCACTTTGGCAATTGGTGATGGTGCAAACGATGTAGGAATGATTCAAGAGGCCGATATTGGTGTCGGTATCAGTGGGGTTGAAGGCATGCAGGCTGTGATGGCTAGTGATTTCTCTATTGCTCAATTTCGTTTTCTTGAAAGGCTTCTGGTAGTCCATGGTCATTGGTGCTACAAGAGGATAGCGCAAATGATTTGCTACTTCTTCTACAAGAATATTGCATTTGGATTAACGCTGTTCTACTTCGAAGCATTTGCGGGATTTTCTGGCCAATCAATTTATGATGATTTCTACATGCTATCATTTAATGTCATACTCACCTCATTGCCTGTAATTTCCCTTGGAGTTTTTGAACAAGATGTCTCTTCTGAGGTGTGCCTGCAGTTTCCTGCGCTGTATCAGCAGGGTCCCCGTAATTTGTTCTTTGACTGGCCTCGGATTTTCGGATGGATGGGGAATGCTCTCTACTGCTCTCTAGTTATTTTCTTCCTCAATCTCATAATCTTCTATGACCAGGCATTCCGCTCGGGTGGCCAAACTGCGGATATGACTGCTGTAGGAACCACCATGTTTACTTGCATCATATGGGCAGTAAATTGCCAGATTGCCCTCACAATGAGCCATTTCACCTGGATCCAACACGTTTTCGTGTGGGGTAGTATCGCGATGTGGTATTTGTTCATCTTACTCTATGGAATGATAATATCAGCTGGGCATGCATATAAAATATTTGTTGAAGTACTAGGCCCTGCCCCTGTTTACTGGATAGCCACCATTTTAGTAACAATCACTTGCAATCTCCCATACCTTGCCCACATATCCTTCCAGAGAAGCTTCAATCCAATGGATCATCAAATAATCCAAGAAATCAAATACTACAGAAAGGATGTGGAAGACACACACATGTGGACCAGGGAAAGATCAAAAGCAAGGCAAAAGACAAAGATAGGATTCACAGCCAGAGTAGAAGCAAAGATCAGGCAGTTGAAAGGAAAGCTGCAAAAGAAGCACTCTTCCCTTGGGATGGCTCCTCCAAATGCTGCTTCATGA 3696 42.86 MKIESMRRGRIREKIRRSNLYTFACLRAESAREADNSHPLTGPGFSRIVCCNQPHLHDKKPLKYKSNYISTTKYNVLTFLPKALFEQFRRVANVYFLLAALLSLTPVAPFSAMSMIAPLVFVVGLSMAKEALEDWSRFMQDMKVNIRKVTVHKGGGVFGHRAWHKIRVGDILKIEKDKFFPADLLLLSSCYEDGICYVETMNLDGETNLKVKRSLEVTLPLDNDASFKDFTAKIYCEDPNPNLYTFVGNFEYDNQIHPLDPSQILLRDSKLRNTAYAYGVVIFTGHESKVMQNATKSPSKRSGIERKMDKIIYILFSLLVLISSMSSIGFAVKTKYQMTDWWYLQTTGDDPLYNPQKPTLSGLMHLITALILYGYLLPISLYVSIEVVKVLQASFINQDINMYCDESGNTARARTSNLNEELGQVDTILSDKTGTLTCNQMDFLKCSIAGTQYGVKASEVELAAARQMAYDLEEEQDSEYSVPVEKISRQPSSSSSRRGSEIELETVVTSGDVKEQKSAIKYFGFEDSRLTGGNWLNEPKPDVLLLFFRILAICHTAIPEQNEETGAYTYEAESPDEGAFLVAAREFGFEFCKRTQSTCVVRERYPSPNQVIEREYKILNLLDFTSKRKRMSVIIRDEDGQIILLCKGADSIIFDRLAKNGRTYEEATTRHLNEYGEAGLRTLTLAYRKLEESEYTEWNNEFQKAKTAIGGERDAMLERVSDVMERELTLVGATAVEDKLQNGVPQCIDTLAQAGLKIWVLTGDKMETAINIGYACSLLRQGMKQICISANSDALVQEGKQATKDNILNQITNASQNIKLEKDPHAAFALIIDGKTLTYALEDDMKLQFLELAVDCASVICCRVSPKQKALVVRLVKEGTGKTTLAIGDGANDVGMIQEADIGVGISGVEGMQAVMASDFSIAQFRFLERLLVVHGHWCYKRIAQMICYFFYKNIAFGLTLFYFEAFAGFSGQSIYDDFYMLSFNVILTSLPVISLGVFEQDVSSEVCLQFPALYQQGPRNLFFDWPRIFGWMGNALYCSLVIFFLNLIIFYDQAFRSGGQTADMTAVGTTMFTCIIWAVNCQIALTMSHFTWIQHVFVWGSIAMWYLFILLYGMIISAGHAYKIFVEVLGPAPVYWIATILVTITCNLPYLAHISFQRSFNPMDHQIIQEIKYYRKDVEDTHMWTRERSKARQKTKIGFTARVEAKIRQLKGKLQKKHSSLGMAPPNAAS 1231
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 6648510 6654319 - Sed0005109.1 Sed04g0798 709401
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed04g0798 1231 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 530 694 IPR023299 GO:0000166(InterPro)
Sed04g0798 1231 Gene3D - 426 438 IPR023214 -
Sed04g0798 1231 Gene3D - 439 461 IPR023299 GO:0000166(InterPro)
Sed04g0798 1231 ProSitePatterns E1-E2 ATPases phosphorylation site. 431 437 IPR018303 -
Sed04g0798 1231 FunFam Phospholipid-transporting ATPase 731 927 - -
Sed04g0798 1231 SUPERFAMILY Calcium ATPase, transduction domain A 155 294 IPR008250 -
Sed04g0798 1231 NCBIfam phospholipid-translocating P-type ATPase 64 1171 IPR006539 GO:0000287(InterPro)|GO:0005524(InterPro)|GO:0015914(InterPro)|GO:0016020(InterPro)|GO:0140326(InterPro)
Sed04g0798 1231 Gene3D - 598 730 IPR023299 GO:0000166(InterPro)
Sed04g0798 1231 SUPERFAMILY Calcium ATPase, transmembrane domain M 62 1154 IPR023298 -
Sed04g0798 1231 Coils Coil 455 475 - -
Sed04g0798 1231 CDD P-type_ATPase_APLT_Dnf-like 66 1046 - -
Sed04g0798 1231 SFLD p-type atpase 413 938 IPR044492 -
Sed04g0798 1231 MobiDBLite consensus disorder prediction 481 502 - -
Sed04g0798 1231 MobiDBLite consensus disorder prediction 483 502 - -
Sed04g0798 1231 Pfam Cation transport ATPase (P-type) 552 657 - -
Sed04g0798 1231 Gene3D - 123 297 - -
Sed04g0798 1231 FunFam Phospholipid-transporting ATPase 598 729 - -
Sed04g0798 1231 NCBIfam HAD-IC family P-type ATPase 859 968 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
Sed04g0798 1231 PANTHER PROBABLE PHOSPHOLIPID-TRANSPORTING ATPASE 41 1177 - GO:0005886(PANTHER)|GO:0045332(PANTHER)|GO:0140326(PANTHER)
Sed04g0798 1231 Gene3D - 731 927 IPR023214 -
Sed04g0798 1231 PRINTS P-type cation-transporting ATPase superfamily signature 429 443 - -
Sed04g0798 1231 PRINTS P-type cation-transporting ATPase superfamily signature 887 906 - -
Sed04g0798 1231 FunFam Phospholipid-transporting ATPase 125 295 - -
Sed04g0798 1231 Pfam Phospholipid-translocating ATPase N-terminal 51 116 IPR032631 -
Sed04g0798 1231 SFLD Haloacid Dehalogenase 413 938 - -
Sed04g0798 1231 SUPERFAMILY HAD-like 417 931 IPR036412 -
Sed04g0798 1231 Pfam Phospholipid-translocating P-type ATPase C-terminal 915 1163 IPR032630 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed04g0798 Sed-Chr4:6648510 Sed09g1676 Sed-Chr9:40123945 0.00E+00 dispersed
Sed04g0798 Sed-Chr4:6648510 Sed09g1675 Sed-Chr9:40123945 0.00E+00 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed04g0798 K01530 - csv:101221220 2199.86