Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed04g0798 | ATGAAAATCGAGTCGATGAGACGGGGAAGAATAAGGGAGAAGATCCGCCGAAGCAATCTCTATACATTCGCTTGCCTCCGTGCAGAGAGTGCCCGTGAGGCTGACAATTCGCATCCTTTAACGGGGCCTGGTTTCTCACGCATTGTCTGTTGTAACCAACCTCATCTCCATGATAAGAAGCCATTGAAATACAAATCCAATTACATATCCACCACCAAGTATAATGTTCTTACTTTCTTGCCTAAGGCTCTCTTTGAGCAATTCCGGAGGGTTGCCAATGTGTACTTTCTTTTGGCTGCTTTGTTATCGCTCACACCAGTCGCCCCATTTTCGGCCATGAGCATGATTGCTCCTCTCGTGTTTGTTGTTGGGCTCAGTATGGCGAAAGAAGCTCTTGAGGACTGGAGCCGATTTATGCAGGATATGAAAGTTAATATCAGGAAAGTGACTGTTCATAAAGGGGGAGGTGTTTTTGGTCATAGAGCTTGGCACAAGATTCGAGTAGGAGATATCTTGAAAATTGAGAAGGATAAGTTCTTTCCGGCCGATCTACTTCTCCTGTCATCATGCTATGAGGATGGTATATGTTATGTAGAAACTATGAATTTGGATGGTGAGACTAATCTCAAAGTAAAGAGATCCTTGGAAGTAACCTTGCCGTTGGATAATGATGCATCTTTCAAAGATTTTACTGCAAAAATTTACTGTGAAGATCCAAACCCGAATCTTTACACCTTTGTAGGTAACTTTGAATATGATAACCAGATTCATCCTCTTGATCCTAGTCAGATTCTCCTTAGAGATTCAAAATTGAGGAATACAGCTTATGCCTATGGGGTGGTGATATTTACTGGACATGAAAGTAAAGTCATGCAGAATGCAACAAAATCTCCTTCCAAAAGAAGTGGAATAGAGAGAAAAATGGACAAAATTATTTACATCCTTTTTTCTCTCCTTGTATTGATTTCATCGATGAGCTCAATAGGTTTTGCTGTGAAGACAAAGTACCAAATGACAGACTGGTGGTATTTACAAACTACGGGTGACGATCCACTATACAACCCTCAAAAGCCAACCTTATCAGGGCTCATGCATTTGATCACCGCCCTTATACTCTATGGATATTTGTTACCGATCTCACTATATGTTTCCATCGAGGTTGTTAAGGTTTTGCAAGCTTCCTTCATTAACCAAGATATTAACATGTATTGTGATGAAAGTGGCAATACAGCTCGAGCTCGGACTTCAAATTTGAATGAGGAGTTGGGTCAGGTAGACACAATCCTATCTGACAAAACTGGCACTTTGACTTGCAATCAGATGGACTTTCTGAAATGCTCCATTGCTGGTACTCAATATGGAGTTAAAGCTAGTGAGGTTGAACTTGCCGCTGCAAGGCAGATGGCATATGACCTTGAGGAGGAGCAGGATTCAGAATATTCAGTTCCTGTTGAAAAAATTAGCCGACAACCTTCCTCCTCAAGTAGCAGAAGAGGATCAGAGATCGAACTGGAGACTGTTGTTACTTCAGGTGATGTCAAAGAGCAGAAGTCTGCCATAAAGTATTTTGGTTTCGAGGACAGCCGTCTGACAGGTGGAAACTGGTTGAATGAGCCCAAGCCTGATGTTCTTCTATTGTTCTTCCGAATCTTAGCGATTTGTCACACTGCAATTCCTGAGCAGAATGAGGAGACTGGTGCTTATACATATGAAGCCGAGTCCCCCGATGAAGGTGCTTTTCTTGTTGCAGCAAGAGAATTCGGGTTTGAGTTTTGTAAGAGAACACAATCTACTTGTGTTGTCCGTGAAAGATATCCTTCACCTAACCAAGTAATTGAAAGGGAATACAAAATTTTGAATCTCTTGGATTTCACAAGCAAGAGAAAGAGAATGTCTGTAATTATTAGGGACGAGGATGGCCAGATTATTCTTCTTTGCAAAGGGGCTGATAGCATCATCTTCGACCGACTAGCAAAGAACGGAAGAACGTACGAGGAAGCAACCACTAGGCATTTGAATGAATATGGAGAAGCTGGGTTGCGTACTTTGACACTTGCTTACAGGAAGCTTGAGGAGTCTGAATATACTGAATGGAACAATGAGTTTCAGAAGGCTAAGACAGCCATTGGAGGAGAGAGAGATGCAATGCTCGAGCGAGTGTCCGACGTCATGGAACGAGAATTAACTCTTGTTGGTGCTACTGCTGTGGAGGACAAGTTACAGAATGGGGTGCCCCAATGCATAGACACACTTGCACAAGCAGGCCTTAAGATCTGGGTTCTGACAGGAGATAAGATGGAAACTGCCATCAACATAGGATATGCATGCAGTTTACTCCGACAGGGAATGAAGCAGATCTGCATATCAGCAAACTCAGATGCATTAGTTCAGGAAGGCAAACAGGCCACGAAAGATAATATTTTGAACCAAATCACCAACGCTTCACAAAACATCAAGCTGGAGAAGGATCCACATGCTGCATTTGCTTTAATCATTGATGGGAAGACTCTAACCTATGCTCTTGAGGATGATATGAAGCTTCAATTTCTCGAACTCGCTGTTGATTGTGCCTCGGTCATTTGCTGTCGCGTCTCTCCCAAGCAGAAGGCCCTGGTTGTTAGGTTAGTGAAAGAAGGTACTGGTAAAACCACTTTGGCAATTGGTGATGGTGCAAACGATGTAGGAATGATTCAAGAGGCCGATATTGGTGTCGGTATCAGTGGGGTTGAAGGCATGCAGGCTGTGATGGCTAGTGATTTCTCTATTGCTCAATTTCGTTTTCTTGAAAGGCTTCTGGTAGTCCATGGTCATTGGTGCTACAAGAGGATAGCGCAAATGATTTGCTACTTCTTCTACAAGAATATTGCATTTGGATTAACGCTGTTCTACTTCGAAGCATTTGCGGGATTTTCTGGCCAATCAATTTATGATGATTTCTACATGCTATCATTTAATGTCATACTCACCTCATTGCCTGTAATTTCCCTTGGAGTTTTTGAACAAGATGTCTCTTCTGAGGTGTGCCTGCAGTTTCCTGCGCTGTATCAGCAGGGTCCCCGTAATTTGTTCTTTGACTGGCCTCGGATTTTCGGATGGATGGGGAATGCTCTCTACTGCTCTCTAGTTATTTTCTTCCTCAATCTCATAATCTTCTATGACCAGGCATTCCGCTCGGGTGGCCAAACTGCGGATATGACTGCTGTAGGAACCACCATGTTTACTTGCATCATATGGGCAGTAAATTGCCAGATTGCCCTCACAATGAGCCATTTCACCTGGATCCAACACGTTTTCGTGTGGGGTAGTATCGCGATGTGGTATTTGTTCATCTTACTCTATGGAATGATAATATCAGCTGGGCATGCATATAAAATATTTGTTGAAGTACTAGGCCCTGCCCCTGTTTACTGGATAGCCACCATTTTAGTAACAATCACTTGCAATCTCCCATACCTTGCCCACATATCCTTCCAGAGAAGCTTCAATCCAATGGATCATCAAATAATCCAAGAAATCAAATACTACAGAAAGGATGTGGAAGACACACACATGTGGACCAGGGAAAGATCAAAAGCAAGGCAAAAGACAAAGATAGGATTCACAGCCAGAGTAGAAGCAAAGATCAGGCAGTTGAAAGGAAAGCTGCAAAAGAAGCACTCTTCCCTTGGGATGGCTCCTCCAAATGCTGCTTCATGA | 3696 | 42.86 | MKIESMRRGRIREKIRRSNLYTFACLRAESAREADNSHPLTGPGFSRIVCCNQPHLHDKKPLKYKSNYISTTKYNVLTFLPKALFEQFRRVANVYFLLAALLSLTPVAPFSAMSMIAPLVFVVGLSMAKEALEDWSRFMQDMKVNIRKVTVHKGGGVFGHRAWHKIRVGDILKIEKDKFFPADLLLLSSCYEDGICYVETMNLDGETNLKVKRSLEVTLPLDNDASFKDFTAKIYCEDPNPNLYTFVGNFEYDNQIHPLDPSQILLRDSKLRNTAYAYGVVIFTGHESKVMQNATKSPSKRSGIERKMDKIIYILFSLLVLISSMSSIGFAVKTKYQMTDWWYLQTTGDDPLYNPQKPTLSGLMHLITALILYGYLLPISLYVSIEVVKVLQASFINQDINMYCDESGNTARARTSNLNEELGQVDTILSDKTGTLTCNQMDFLKCSIAGTQYGVKASEVELAAARQMAYDLEEEQDSEYSVPVEKISRQPSSSSSRRGSEIELETVVTSGDVKEQKSAIKYFGFEDSRLTGGNWLNEPKPDVLLLFFRILAICHTAIPEQNEETGAYTYEAESPDEGAFLVAAREFGFEFCKRTQSTCVVRERYPSPNQVIEREYKILNLLDFTSKRKRMSVIIRDEDGQIILLCKGADSIIFDRLAKNGRTYEEATTRHLNEYGEAGLRTLTLAYRKLEESEYTEWNNEFQKAKTAIGGERDAMLERVSDVMERELTLVGATAVEDKLQNGVPQCIDTLAQAGLKIWVLTGDKMETAINIGYACSLLRQGMKQICISANSDALVQEGKQATKDNILNQITNASQNIKLEKDPHAAFALIIDGKTLTYALEDDMKLQFLELAVDCASVICCRVSPKQKALVVRLVKEGTGKTTLAIGDGANDVGMIQEADIGVGISGVEGMQAVMASDFSIAQFRFLERLLVVHGHWCYKRIAQMICYFFYKNIAFGLTLFYFEAFAGFSGQSIYDDFYMLSFNVILTSLPVISLGVFEQDVSSEVCLQFPALYQQGPRNLFFDWPRIFGWMGNALYCSLVIFFLNLIIFYDQAFRSGGQTADMTAVGTTMFTCIIWAVNCQIALTMSHFTWIQHVFVWGSIAMWYLFILLYGMIISAGHAYKIFVEVLGPAPVYWIATILVTITCNLPYLAHISFQRSFNPMDHQIIQEIKYYRKDVEDTHMWTRERSKARQKTKIGFTARVEAKIRQLKGKLQKKHSSLGMAPPNAAS | 1231 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 6648510 | 6654319 | - | Sed0005109.1 | Sed04g0798 | 709401 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed04g0798 | 1231 | SUPERFAMILY | Metal cation-transporting ATPase, ATP-binding domain N | 530 | 694 | IPR023299 | GO:0000166(InterPro) | |
Sed04g0798 | 1231 | Gene3D | - | 426 | 438 | IPR023214 | - | |
Sed04g0798 | 1231 | Gene3D | - | 439 | 461 | IPR023299 | GO:0000166(InterPro) | |
Sed04g0798 | 1231 | ProSitePatterns | E1-E2 ATPases phosphorylation site. | 431 | 437 | IPR018303 | - | |
Sed04g0798 | 1231 | FunFam | Phospholipid-transporting ATPase | 731 | 927 | - | - | |
Sed04g0798 | 1231 | SUPERFAMILY | Calcium ATPase, transduction domain A | 155 | 294 | IPR008250 | - | |
Sed04g0798 | 1231 | NCBIfam | phospholipid-translocating P-type ATPase | 64 | 1171 | IPR006539 | GO:0000287(InterPro)|GO:0005524(InterPro)|GO:0015914(InterPro)|GO:0016020(InterPro)|GO:0140326(InterPro) | |
Sed04g0798 | 1231 | Gene3D | - | 598 | 730 | IPR023299 | GO:0000166(InterPro) | |
Sed04g0798 | 1231 | SUPERFAMILY | Calcium ATPase, transmembrane domain M | 62 | 1154 | IPR023298 | - | |
Sed04g0798 | 1231 | Coils | Coil | 455 | 475 | - | - | |
Sed04g0798 | 1231 | CDD | P-type_ATPase_APLT_Dnf-like | 66 | 1046 | - | - | |
Sed04g0798 | 1231 | SFLD | p-type atpase | 413 | 938 | IPR044492 | - | |
Sed04g0798 | 1231 | MobiDBLite | consensus disorder prediction | 481 | 502 | - | - | |
Sed04g0798 | 1231 | MobiDBLite | consensus disorder prediction | 483 | 502 | - | - | |
Sed04g0798 | 1231 | Pfam | Cation transport ATPase (P-type) | 552 | 657 | - | - | |
Sed04g0798 | 1231 | Gene3D | - | 123 | 297 | - | - | |
Sed04g0798 | 1231 | FunFam | Phospholipid-transporting ATPase | 598 | 729 | - | - | |
Sed04g0798 | 1231 | NCBIfam | HAD-IC family P-type ATPase | 859 | 968 | IPR001757 | GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro) | |
Sed04g0798 | 1231 | PANTHER | PROBABLE PHOSPHOLIPID-TRANSPORTING ATPASE | 41 | 1177 | - | GO:0005886(PANTHER)|GO:0045332(PANTHER)|GO:0140326(PANTHER) | |
Sed04g0798 | 1231 | Gene3D | - | 731 | 927 | IPR023214 | - | |
Sed04g0798 | 1231 | PRINTS | P-type cation-transporting ATPase superfamily signature | 429 | 443 | - | - | |
Sed04g0798 | 1231 | PRINTS | P-type cation-transporting ATPase superfamily signature | 887 | 906 | - | - | |
Sed04g0798 | 1231 | FunFam | Phospholipid-transporting ATPase | 125 | 295 | - | - | |
Sed04g0798 | 1231 | Pfam | Phospholipid-translocating ATPase N-terminal | 51 | 116 | IPR032631 | - | |
Sed04g0798 | 1231 | SFLD | Haloacid Dehalogenase | 413 | 938 | - | - | |
Sed04g0798 | 1231 | SUPERFAMILY | HAD-like | 417 | 931 | IPR036412 | - | |
Sed04g0798 | 1231 | Pfam | Phospholipid-translocating P-type ATPase C-terminal | 915 | 1163 | IPR032630 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed04g0798 | Sed-Chr4:6648510 | Sed09g1676 | Sed-Chr9:40123945 | 0.00E+00 | dispersed | |
Sed04g0798 | Sed-Chr4:6648510 | Sed09g1675 | Sed-Chr9:40123945 | 0.00E+00 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed04g0798 | K01530 | - | csv:101221220 | 2199.86 |