Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed04g0819 ATGGGAAGCGGAGCGTCCAGCCTGTTCTCCTGCCTCAAGCCGGAGAGCCGCCCCTCCGCCGCCGCCGACAACCCCGACGTCCTCTTCTCCGCCTCCGAGCCTCTGGACGAAACCCTCGGCCACTCCTTCTGCTACGTCCGCTCTTCCAACCGCTTCCTCTCCCCCTCCCACTCCGATCGCTTCCTCTCCCCTTCCCACTCCCTCCGCTTCTCCTCCCCTCCCCACTCCACCGCCGCCTTCAAGGCCATCTCCGGCGCCTCCGTCAGCGCCAACAGTTCCATTCCCAGATCTGTTCTCATCCTCGACTCCGCCCCCGACGCCACCCTCCTCAATGGCTTCGAGACTTCTTCTTCTTTCACGGCCCTCCCCCTTCAGCCCGTTCCCCGAGGCGCCGCTGTTGACCCCTTCGACCGCGCCGCCGGCGGCTTCTTCCTCTCCGGCCCGATTGAGCGCGGCGCCCTCTCTGGCCCTCTCGATCCCAGTCTCGATCCTCCCGGTTCCGCCCGAGTCCATTTCTCCGCTCCCCTTGGTGGAATGTACGCCAAGAAGAAGAGGAAGAAGAGTATTTCCGGTTTCAAGAAGGTCTTTACTAGGAATTTTTCTGATAAGCGGCCCTGGGTTGTGCCGGTGTTGAATTTCGTTGGCCGGAAGGAGGCCTCGACCACTGCCGCCGCGGGAGATGAGGCGGAGGCGAGGAACGAGACGGATGTTCAATGGGCGCTTGGGAAGGCTGGGGAGGATCGTGTTCATGTGGTTGTTTCCGAGGAGCAAGGCTGGTTGTTTGTTGGGATTTATGATGGGTTTAATGGCCCCGATGGGCCGGAATTCTTGATGGGTAATCTCTATAAAGCTGTGTTCAACGAGCTTCAGGGATTGTTTTGGGAAATTGATGATTCCGTGCAGGCTGCTGCTAATGTCGTTGCCGAGACTACAGTCAGTGTGAATGAAACTAATGCTCCAACCGTTGAATGTAATGGGCCTGTTTCAGTTGTTGCAAATGAAGGGGAAGCTGAACCGCCAGCTACTGATCGAGGATCGGTGAAGAGGGTCACGTTTCAATCCGAGGATGGATTGGAGAGCAGGCGGAGGAAGCGGCTGTGGGAGTATTTAGCCGAGGACGATTCGCAGGACGGACTTGATCTTTCGGGGTCGGATAGATTTGCATTTTCGGTTGATGATGCGCTTAGTGTAAATAGTGCAGGTTCAGTAGCTGGTAGAAGGTGGCTGCTATTGTCCAAGTTAAAACAAGGGCTGTCAAAGCACAAGGAGGGTAATAATGTGAAGACTTTATTCCCGTGGAAGTATGGTTTAGGAGATAAAGAGAAGGTTGAGGCTGAGAATAGGGTGGAGGAGAGCTCTTATCGGAGCGGTAAGAGGAGAAAGGAAGGCTTAATTGATCATGAGTTGGTGTTGGGGGCGTTGTCAAGGGCTCTTGAAGTAACTGAATTAGCATATTTGGATATGACAGATAAGTTGCTTGATTCAAATCCAGAGCTTGCTTTGATGGGTTCTTGCTTGCTGGTTGTGTTAATGAGGGATGAAGATGTGTATGTAATGAATTTGGGCGACAGCCGTGCCATTGTTGCACAGTATGAGCAACAAGAAGTTGGCCCAAGTGAGGACTTGAAAGAGGGGAGCGACAAAAGAACAGGCATGGAGGGTATACTTGAGGAATCTACCGCAATGAGTGAAGGAAAAATAACCCAAACTAACCAGACTTTGGCTCAGACGACGAGATTATCTGCATTGCAACTATCCACTGATCATAGCACGAGCATTGAAGAGGAAGTAAAAAGAATAAAGAATGAGCACCCTGATGATAAACAATGCATTGTCAATGATAGAGTGAAGGGTCGTTTAAAGGTTACAAGGGCATTTGGTGCAGGATTTTTGAAACAGCCAAAGTTGAACGCTGTATTATTGGAAATGTTTCGGAATGATTACATTGGTACGGCACCATATTTATCATGCATCCCTTCTCTTTGTCACCATAGACTTTGCCCCACAGATCAGTTCATAGTGCTCTCATCTGATGGGTTGTATCAATATCTAACCAATGAAGAAGTGGTTTCTTATGTTGAGAACTTTATTGAGAAATTTCCAGATGGAGACCCTGCACAGCACTTGATAGAGGAGCTTCTTTGCCGTGCAGCTAGAAAAGCAGGGATGGATTTTCATGAATTGTTGGACATCCCACAGGGGGATCGGAGGAAGTATCATGATGACGTAACTGTTATGGTCATTTCACTTGAAGGAAGAATCTGGAAATCCTCAGGAAAATATCTTTGA 2289 50.59 MGSGASSLFSCLKPESRPSAAADNPDVLFSASEPLDETLGHSFCYVRSSNRFLSPSHSDRFLSPSHSLRFSSPPHSTAAFKAISGASVSANSSIPRSVLILDSAPDATLLNGFETSSSFTALPLQPVPRGAAVDPFDRAAGGFFLSGPIERGALSGPLDPSLDPPGSARVHFSAPLGGMYAKKKRKKSISGFKKVFTRNFSDKRPWVVPVLNFVGRKEASTTAAAGDEAEARNETDVQWALGKAGEDRVHVVVSEEQGWLFVGIYDGFNGPDGPEFLMGNLYKAVFNELQGLFWEIDDSVQAAANVVAETTVSVNETNAPTVECNGPVSVVANEGEAEPPATDRGSVKRVTFQSEDGLESRRRKRLWEYLAEDDSQDGLDLSGSDRFAFSVDDALSVNSAGSVAGRRWLLLSKLKQGLSKHKEGNNVKTLFPWKYGLGDKEKVEAENRVEESSYRSGKRRKEGLIDHELVLGALSRALEVTELAYLDMTDKLLDSNPELALMGSCLLVVLMRDEDVYVMNLGDSRAIVAQYEQQEVGPSEDLKEGSDKRTGMEGILEESTAMSEGKITQTNQTLAQTTRLSALQLSTDHSTSIEEEVKRIKNEHPDDKQCIVNDRVKGRLKVTRAFGAGFLKQPKLNAVLLEMFRNDYIGTAPYLSCIPSLCHHRLCPTDQFIVLSSDGLYQYLTNEEVVSYVENFIEKFPDGDPAQHLIEELLCRAARKAGMDFHELLDIPQGDRRKYHDDVTVMVISLEGRIWKSSGKYL 762
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 6845396 6855664 + Sed0006009.1 Sed04g0819 709422
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed04g0819 762 SMART PP2C_4 230 748 IPR001932 -
Sed04g0819 762 SUPERFAMILY PP2C-like 242 751 IPR036457 -
Sed04g0819 762 Pfam Protein phosphatase 2C 583 713 IPR001932 -
Sed04g0819 762 CDD PP2Cc 461 750 IPR001932 -
Sed04g0819 762 PANTHER PROTEIN PHOSPHATASE 2C 238 750 IPR015655 GO:0004722(InterPro)|GO:0006470(PANTHER)|GO:0006470(InterPro)
Sed04g0819 762 Gene3D - 215 757 IPR036457 -
Sed04g0819 762 ProSiteProfiles PPM-type phosphatase domain profile. 231 750 IPR001932 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed04g0819 Sed-Chr4:6845396 Sed14g0488 Sed-Chr14:4825772 6.30E-123 dispersed
Sed04g0819 Sed-Chr4:6845396 Sed05g2962 Sed-Chr5:40379294 9.30E-135 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed04g0819 - - - 0.0