Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed04g0827 ATGGCTGGATTGGATTTAGGAAGTCGATATCTAACTCATTTCCAGACATCTATAGATGATCCTGCAAACGGCGGGAGTCATTACTCCTCAGCCAACCACCAAGACGACGACGAGGATCCTCATCAGGCCGTCGGGGGCTCGATGGATGTGGTAGGGCGCCGCCCCCGCGGGCGCCCACCGGGGTCCAAGAACAAGCCAAAGCCCCCAGTAATCATCGCTCGAGAGAGCGCCAACACACTCCGTGTCCACATCCTCGAGGTCGGTAACGGCTGCGACATCTTCGAATGCATCGCAGCGTACGCCCGTCGTGGACAGCGAGGGATCTGTATTTTGAGCGGCAGCGGCAGCGTTACCAACGTGGGAATCCGGCAGCCCGCAGCAAGCGGGGCTGGGGCTGTCCTGGTGCTTCATGGTAGGTTTGAGATATTGTCGCTTTCGGGATCGTTTCTTCCGCCGCCTGCTCCGCCCGGGGCGACGAGTTTGACGATATATATGGGGGGAGGGCAGGGGCAGGTGGTCGGGGGGAGGGTGGCGGGAGAGTTGACGGCGGCGGGGCCGGTGATGCTGATTGCTGCTTCGTTTAGTAATGTGGCGTATGAGAGGTTACCACTGGATGAGGAAGATCATGATCAGCAGCAACCACTGGCACCAAACAACAACACATTTCAAGACCCATCAAATTCAGGGCTTCCATTCTTGAATTTGCCACTTCATATGCAAAATGTTCAGCTTCCACCTTTTTGA 744 56.72 MAGLDLGSRYLTHFQTSIDDPANGGSHYSSANHQDDDEDPHQAVGGSMDVVGRRPRGRPPGSKNKPKPPVIIARESANTLRVHILEVGNGCDIFECIAAYARRGQRGICILSGSGSVTNVGIRQPAASGAGAVLVLHGRFEILSLSGSFLPPPAPPGATSLTIYMGGGQGQVVGGRVAGELTAAGPVMLIAASFSNVAYERLPLDEEDHDQQQPLAPNNNTFQDPSNSGLPFLNLPLHMQNVQLPPF 247
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 7002495 7003369 + Sed0009867.1 Sed04g0827 709430
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed04g0827 247 Gene3D - 80 213 - -
Sed04g0827 247 MobiDBLite consensus disorder prediction 206 227 - -
Sed04g0827 247 Pfam Plants and Prokaryotes Conserved (PCC) domain 81 195 IPR005175 -
Sed04g0827 247 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 31 213 IPR014476 GO:0003680(PANTHER)|GO:0003680(InterPro)|GO:0003700(PANTHER)|GO:0005634(PANTHER)
Sed04g0827 247 MobiDBLite consensus disorder prediction 16 70 - -
Sed04g0827 247 FunFam AT-hook motif nuclear-localized protein 80 209 - -
Sed04g0827 247 SUPERFAMILY AF0104/ALDC/Ptd012-like 77 212 - -
Sed04g0827 247 CDD DUF296 81 158 IPR005175 -
Sed04g0827 247 ProSiteProfiles PPC domain profile profile. 77 215 IPR005175 -
Sed04g0827 247 MobiDBLite consensus disorder prediction 213 227 - -
Sed04g0827 247 MobiDBLite consensus disorder prediction 16 30 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed04g0827 Sed-Chr4:7002495 Sed04g2132 Sed-Chr4:35516710 5.10E-74 dispersed
Sed02g0122 Sed-Chr2:26707387 Sed04g0827 Sed-Chr4:7002495 5.90E-102 transposed
Sed01g4099 Sed-Chr1:69893436 Sed04g0827 Sed-Chr4:7002495 8.80E-79 wgd
Sed04g0827 Sed-Chr4:7002495 Sed05g0289 Sed-Chr5:1834335 2.20E-77 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed04g0827 - - - 0.0