Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed04g0828 ATGGATTCCCGGGAGAGACCGATGCACTCAGTTCATCAACCCCAGCCACAATCCACGCCCAACAGAATGATGGGCAACCACGCTTCTTATTCCCCCAATTTTCCCAACACCCACAACCATTCTTCGCCATTGATCAACCCCAACTCCGCCCCTCCTCCGATCATGTCGCCCACATCGCGATTTCCCTTCCATTCCATGATGGGCTCTGTCTCTAAGCCCACGGAATCGCCCAATCCCGCCTCTCACGACGGATCGCAATCCGAATTTCGCACCGGGGGGTTTAGCATTGACTCCAGCAAGAAGAAGAGAGGCCGCCCTAGGAAGTACTCGCCTGATGGCAACATTGCTTTGGGCTTGGCCCCAACCCCCATCACTTCTTCTGCCCTTCCTGGCGATTCTGCTGCCGTGCACTCGGCCGATCCCTGCCCGAAGAGGAATCGGGGGCGGCCGCCCGGTACCGGGAAGAAGCAGATGGATGCTTTGGGAACTGGCGGTGTTGGGTTTACTCCTCATGTCATTCTGGTGAAACCAGGAGAGGACATTGCCTCAAAAGTTATGGCATTTTCACAGCAGGGGCCTCGGACTGTTTGTATTCTCTCTGCTCATGGTGCTGTCTGCAATGTTACCCTTCAACCCGCAATGACAGCCAGTAGTGTGTCATATGAGGGTCAATTTGAAATCATCTCTCTATCGGGCTCTTTCCTGATTTCTGGCAGTAATGGTAATCGAAGTCGATCTGGTGGTTTAAGCGTGTCTCTAGCAAGAGCAGATGGCCACGTTCTTGGTGGAGTTACCAATATGCTAACGGCAGCATCTTTAGTTCAGGTTATAGTGGGTAGCTTTCTTGCGGATGGGAAAAGGCTGGGCTCAAGTATACAGAAATTTGAGCCATCTTCTACATCACCCAATATGTTAAACTTTAATGCACCCGCCGCAACCGGCTGTCCCTCTGAAGGTGCATCAAATAATTCATCCGATGACAATGGAGGTAGCCCGTTAAGCCGGGGGCCGGGATTCTACACCAATGCCAATCAACCAATTCATAATATGCAGATGTATCAATTATGGGGCAGTCGAAATCAATAA 1086 51.47 MDSRERPMHSVHQPQPQSTPNRMMGNHASYSPNFPNTHNHSSPLINPNSAPPPIMSPTSRFPFHSMMGSVSKPTESPNPASHDGSQSEFRTGGFSIDSSKKKRGRPRKYSPDGNIALGLAPTPITSSALPGDSAAVHSADPCPKRNRGRPPGTGKKQMDALGTGGVGFTPHVILVKPGEDIASKVMAFSQQGPRTVCILSAHGAVCNVTLQPAMTASSVSYEGQFEIISLSGSFLISGSNGNRSRSGGLSVSLARADGHVLGGVTNMLTAASLVQVIVGSFLADGKRLGSSIQKFEPSSTSPNMLNFNAPAATGCPSEGASNNSSDDNGGSPLSRGPGFYTNANQPIHNMQMYQLWGSRNQ 361
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 7023928 7037737 - Sed0022359.1 Sed04g0828 709431
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed04g0828 361 SMART AT_hook_2 100 112 IPR017956 GO:0003677(InterPro)
Sed04g0828 361 SMART AT_hook_2 144 156 IPR017956 GO:0003677(InterPro)
Sed04g0828 361 Pfam Plants and Prokaryotes Conserved (PCC) domain 170 281 IPR005175 -
Sed04g0828 361 CDD DUF296 169 281 IPR005175 -
Sed04g0828 361 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 30 331 IPR039605 GO:0003680(InterPro)
Sed04g0828 361 MobiDBLite consensus disorder prediction 1 157 - -
Sed04g0828 361 MobiDBLite consensus disorder prediction 62 94 - -
Sed04g0828 361 MobiDBLite consensus disorder prediction 10 45 - -
Sed04g0828 361 Gene3D - 170 295 - -
Sed04g0828 361 MobiDBLite consensus disorder prediction 293 343 - -
Sed04g0828 361 ProSiteProfiles PPC domain profile profile. 164 308 IPR005175 -
Sed04g0828 361 SUPERFAMILY AF0104/ALDC/Ptd012-like 168 282 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed04g0828 Sed-Chr4:7023928 Sed08g1866 Sed-Chr8:33239738 9.70E-58 dispersed
Sed04g0828 Sed-Chr4:7023928 Sed04g0829 Sed-Chr4:7023928 1.70E-203 tandem
Sed02g0121 Sed-Chr2:26547305 Sed04g0828 Sed-Chr4:7023928 4.80E-122 transposed
Sed01g4101 Sed-Chr1:69906585 Sed04g0828 Sed-Chr4:7023928 2.90E-62 wgd
Sed04g0828 Sed-Chr4:7023928 Sed05g0291 Sed-Chr5:1843743 1.10E-58 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed04g0828 - - - 0.0