Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed04g0836 ATGACTGATTATCGTTTATCGACCATGAATCTATGGACCGACGAGAACGCGTCGGTCATGGATGCTTTCATGAACTCCGATCTGTCCTCTTACTGGGCTCCATCGTCGGCGTCTTCTCACTCTCTCCACAACCCACCTCCGCCGCAGTCCTCCGCCTCCACCTCCGCTCCGCCGCCGCCGGTCCTCAACCAGGAGACTCTGCAGCAGCGTCTCCAGGCTCTCATGGACGGCGTCCGGGAGAGTTGGACCTACGCCATTTTCTGGCAGTCCTCTTATGATTATTCCGGCGGATCTGTTTTGGGTTGGGGAGATGGGTACTACAAAGGGGAGGAGGATAAAGGGAAGGGCAAAGCCAAAGTGGTTTCGTCCGCGGCGGAGCAGGCTCACCGGAAGAAGGTTCTCCGGGAGCTTAACTCTTTGATTTCCGGCTCTGCTGCCGGATCCGACGATGCCGTCGACGAGGAGGTTACAGACACCGAGTGGTTCTTTTTGGTTTCCATGACTCAGTCCTTTGGGAATGGAGTTGGGTTGCCGAGTCAGGCGCTGTTTAATTCTTCGACCATTTGGATCACCGGCGGCGACCGGCTCTCCGCCTCGCCCTGTGAGCGTGCCAGACAGGGGAGGCTGTTTGGGTTGCAGACCATGGTGTGTATTCCGTCATCGAACGGCGTTGTGGAAATGGGTTCGACGGAATTGATTCATAAGACGTCGGATTTGATGAACAAGGTGAAGACTCTGTTTAATTTCAACAATCTGGAAACAGGGTCGTGGCAATCGGGCACCACCGCCGTGACAGCCGCCGACGAAGAGGAAAACGACCCGTCGTCGCTGTGGATCAGTGAGCCGACGAGCGCAATCGAGATGAAGGATTCGATTACGACAACCACCGCCACTGTCCTTTCCGGCGGCGCTCCGGCAGCGAAGCCGCTCCATTCTGAAAATCCCAGTTCCAGCAGCTTTGCTGAAAATCTGAGCTCGATTCAACAGCAACCCCATCTAAAACAGAGCCAAAGCTTCTTGAATTTCTCCGATTACGCCTTCGAATCAAATCCCTCAAAGACCACCCCCGCCTCCGCCTCCGCCGCCGCCCCTGCCCCATCGTTCAAGCCGGAACACGGCGGGATGTTGAACTTCGGCAACGGTAGCCACTTCTCCGGCCACTCACAGTACATAAAAGACGAACAGAAAGAGAAAAAAAGATCCCCTGCTTCCCGGAGCAGCAACGACGAAGGGATCCTCTCTTTCACCTCCGGCGCGATCTTGCCTTCCTCCGCCAAAGTAAAATCCGGCGACTCCGACCACTCGGATCTGGAAGCTTCCATGATCCGAGAAGTCGATAGCTGTACAAAAGCAGCATTAGAACCGGAAAAACGACCCCGAAAGCGGGGCCGAAAACCAGCAAACGGAAGAGAAGAGCCATTGAATCATGTGGAAGCAGAGAGGCAACGGCGTGAGAAACTAAACCAGAAATTCTACGCCCTCCGAGCGGTTGTTCCAAACGTATCGAAAATGGACAAGGCCTCGCTGCTGGGCGACGCCGTTTCGTACATCAACGAGCTAAAATCGAAGCTCCAGATCGTCGAATCGGAGAAGACGGAGATGGAGAAACAGGTAGAGTTTCTGAAAAAGGACATGGGAGGAAAAGATGCAGGAAACTGCAGGAACCCAATTGAGGAAGATCGAAAAAATGGGAAGCAAAAGGCAATGGAGATCGAGATTGAAGTAAAAATCATGGGTTGGGACGCGATGATCAGGATTCAAAGCAGTAAAAAGAACCATCCGGCGGCGAGGTTGATGACGGCGTTGATGGATTTGGATTTAGAAATGCTTCACGCGAGTGTTTCTGTAGTGAATGATCTGATGATTCAACAGGCCGCAGTGAAGATGGGGAGCAGATTCTACACACAGGAGCAGCTGAAAATGGCTCTCATCGCCCGAGTCGGTGGCGGCAGCGGATCGATGTAG 1965 53.74 MTDYRLSTMNLWTDENASVMDAFMNSDLSSYWAPSSASSHSLHNPPPPQSSASTSAPPPPVLNQETLQQRLQALMDGVRESWTYAIFWQSSYDYSGGSVLGWGDGYYKGEEDKGKGKAKVVSSAAEQAHRKKVLRELNSLISGSAAGSDDAVDEEVTDTEWFFLVSMTQSFGNGVGLPSQALFNSSTIWITGGDRLSASPCERARQGRLFGLQTMVCIPSSNGVVEMGSTELIHKTSDLMNKVKTLFNFNNLETGSWQSGTTAVTAADEEENDPSSLWISEPTSAIEMKDSITTTTATVLSGGAPAAKPLHSENPSSSSFAENLSSIQQQPHLKQSQSFLNFSDYAFESNPSKTTPASASAAAPAPSFKPEHGGMLNFGNGSHFSGHSQYIKDEQKEKKRSPASRSSNDEGILSFTSGAILPSSAKVKSGDSDHSDLEASMIREVDSCTKAALEPEKRPRKRGRKPANGREEPLNHVEAERQRREKLNQKFYALRAVVPNVSKMDKASLLGDAVSYINELKSKLQIVESEKTEMEKQVEFLKKDMGGKDAGNCRNPIEEDRKNGKQKAMEIEIEVKIMGWDAMIRIQSSKKNHPAARLMTALMDLDLEMLHASVSVVNDLMIQQAAVKMGSRFYTQEQLKMALIARVGGGSGSM 654
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 7092873 7095427 - Sed0021616.1 Sed04g0836 709439
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed04g0836 654 MobiDBLite consensus disorder prediction 389 405 - -
Sed04g0836 654 MobiDBLite consensus disorder prediction 35 49 - -
Sed04g0836 654 MobiDBLite consensus disorder prediction 350 411 - -
Sed04g0836 654 MobiDBLite consensus disorder prediction 35 62 - -
Sed04g0836 654 Gene3D - 470 547 IPR036638 GO:0046983(InterPro)
Sed04g0836 654 FunFam Transcription factor bHLH13 464 538 - -
Sed04g0836 654 Pfam Helix-loop-helix DNA-binding domain 475 521 IPR011598 GO:0046983(InterPro)
Sed04g0836 654 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 67 247 IPR025610 -
Sed04g0836 654 CDD bHLH_AtAIB_like 468 543 - -
Sed04g0836 654 MobiDBLite consensus disorder prediction 311 333 - -
Sed04g0836 654 MobiDBLite consensus disorder prediction 441 481 - -
Sed04g0836 654 Coils Coil 517 544 - -
Sed04g0836 654 PANTHER MYC 51 646 IPR045084 GO:0000976(PANTHER)|GO:0003700(InterPro)|GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(InterPro)|GO:0006355(PANTHER)
Sed04g0836 654 MobiDBLite consensus disorder prediction 302 333 - -
Sed04g0836 654 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 470 540 IPR036638 GO:0046983(InterPro)
Sed04g0836 654 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 471 520 IPR011598 GO:0046983(InterPro)
Sed04g0836 654 SMART finulus 477 526 IPR011598 GO:0046983(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed04g0836 Sed-Chr4:7092873 Sed12g0091 Sed-Chr12:516012 2.20E-47 dispersed
Sed01g4363 Sed-Chr1:71522535 Sed04g0836 Sed-Chr4:7092873 3.10E-23 transposed
Sed04g0932 Sed-Chr4:8683275 Sed04g0836 Sed-Chr4:7092873 2.90E-49 transposed
Sed13g0441 Sed-Chr13:2952672 Sed04g0836 Sed-Chr4:7092873 6.30E-21 transposed
Sed01g4108 Sed-Chr1:69950923 Sed04g0836 Sed-Chr4:7092873 2.20E-188 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
38073 PF14215 bHLH-MYC_N 7.10E-53 CL0161 Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed04g0836 K13422 - csv:101205372 978.393