Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed04g0848 ATGGCACATAATTTTCGCCAATACTCCATTTTGTTTGGTGCCCTAATTATTTGTGTTTCACTAACTGCCCCTTGCTTTGGATTCCATCCCAAGTCCTTTAATGTGTGGTCTAACAATGAGTCTTATGTTGTTTCTAATTGGTCCCCGGCCGTTGCCACCTGGTACGGCCCACCTAACGGTGTCGGGAGCGATGGTGGGTCATGTGGGTACGGAAATACGGTGGCACAAGTACCATTTTCATCGTTCATTACGGCAGTAGGCCCTTCATTGTATAATTCCGGAAATCTTGTGAAATGTTTGGGAATAGGTGCGTGCTCAGGGATTTCAGTGACAGTGGTTATAATTGATAGTTGTCCAGGCGGCCCATGTGCTTCTGACGTCGTTCATTTCGACCTCAGTGGCACTGCTTTTGGTGCTTTGGCTACGCACGGTAATGCCGATAAACTCCGTTCTATCGGCGTTCTCCAAATTCAACATAGAAGGGTGCAATGTAAATATTCAGGAACATCGATTAGTTTTGTGGTGGACAAAGGGTCGAACTCGAACTATTTCGCAACACTAATCGAATACGAAAATGGAGATGGAGATCTTGGTTCGGTGCAACTAAAACCGAGTGGCTCAAACTCATGGCTTCCAATGAGTCAGTCATGGGGTGCGATTTGGAAGCTCGACTCGGGCTCTGTCCTTCACCCTCCCTTCTCCCTCAGGCTCACCACCCTCAACTCGGCCAACACCATAGTAGCTAACAATGTAATTCCCATCGGTTGGAAGCCTGGAAACACTTATAGATCAGTCGTCAATTTCCATACTAATAATTAA 819 46.4 MAHNFRQYSILFGALIICVSLTAPCFGFHPKSFNVWSNNESYVVSNWSPAVATWYGPPNGVGSDGGSCGYGNTVAQVPFSSFITAVGPSLYNSGNLVKCLGIGACSGISVTVVIIDSCPGGPCASDVVHFDLSGTAFGALATHGNADKLRSIGVLQIQHRRVQCKYSGTSISFVVDKGSNSNYFATLIEYENGDGDLGSVQLKPSGSNSWLPMSQSWGAIWKLDSGSVLHPPFSLRLTTLNSANTIVANNVIPIGWKPGNTYRSVVNFHTNN 272
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 7374194 7375420 + Sed0010886.1 Sed04g0848 709451
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed04g0848 272 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 65 169 IPR007112 -
Sed04g0848 272 Pfam Expansin C-terminal domain 171 253 IPR007117 -
Sed04g0848 272 PRINTS Major pollen allergen Lol pI signature 189 204 IPR005795 GO:0005576(InterPro)|GO:0019953(InterPro)
Sed04g0848 272 PRINTS Major pollen allergen Lol pI signature 141 156 IPR005795 GO:0005576(InterPro)|GO:0019953(InterPro)
Sed04g0848 272 PRINTS Major pollen allergen Lol pI signature 173 188 IPR005795 GO:0005576(InterPro)|GO:0019953(InterPro)
Sed04g0848 272 PRINTS Major pollen allergen Lol pI signature 219 236 IPR005795 GO:0005576(InterPro)|GO:0019953(InterPro)
Sed04g0848 272 PRINTS Major pollen allergen Lol pI signature 119 134 IPR005795 GO:0005576(InterPro)|GO:0019953(InterPro)
Sed04g0848 272 PANTHER EXPANSIN-B3 23 269 - -
Sed04g0848 272 SUPERFAMILY Barwin-like endoglucanases 41 168 IPR036908 -
Sed04g0848 272 Gene3D - 31 165 IPR036908 -
Sed04g0848 272 PRINTS Expansin/Lol pI family signature 152 168 IPR007118 GO:0005576(InterPro)
Sed04g0848 272 PRINTS Expansin/Lol pI family signature 46 61 IPR007118 GO:0005576(InterPro)
Sed04g0848 272 PRINTS Expansin/Lol pI family signature 250 264 IPR007118 GO:0005576(InterPro)
Sed04g0848 272 PRINTS Expansin/Lol pI family signature 64 82 IPR007118 GO:0005576(InterPro)
Sed04g0848 272 PRINTS Expansin/Lol pI family signature 210 224 IPR007118 GO:0005576(InterPro)
Sed04g0848 272 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 182 264 IPR007117 -
Sed04g0848 272 SUPERFAMILY PHL pollen allergen 170 264 IPR036749 -
Sed04g0848 272 Gene3D - 166 269 IPR036749 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed04g0699 Sed-Chr4:5651659 Sed04g0848 Sed-Chr4:7374194 1.50E-135 dispersed
Sed04g0848 Sed-Chr4:7374194 Sed05g3141 Sed-Chr5:41476230 2.20E-54 dispersed
Sed04g0848 Sed-Chr4:7374194 Sed05g1952 Sed-Chr5:32873225 4.40E-55 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed04g0848 - - - 0.0