Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed04g0856 ATGGTTTCGAGGTCTTACTCTAACTTGTTAGAGCTTGCTTCTGGTGGTTGTTCTCCAACTTTTGGCCTCGGCCGAGAGAAGAAGAGGCTTCCTAGAGTGGCCACTGTGGCTGGAGTCTTGTCTGAGCTTGATGATGATTGCTGCAATAGTACTGGCTCGGATGCCCCTTCGACCGTTGCGCAAGATCGGATGATTATTGTTGGGAATCAGCTCCCGATTCGGGCGAGTCGAGATGAGAATGGAGATTGGGGGTTTAGTATGGATGAGGATTCACTTCTTTTGCAGCTTAAAGATGGGCTTGGTGAAGATGTTGAAGTGATTTATATTGGTTGTCTCAGTGAGGAGGTTGATCCGAGGGAGCAAGATGAGGTTGCACAAACTCTTTTGGATCGATTCAAGTGCGTCCCAACGTTCCTGCCTCCGGAGCTTTTCACTAAATTTTATCATGGATTCTGCAAGCAACATTTATGGCCATTGTTTCACTATATGCTTCCTCTTTCACCGGACCTTGGTGGTCGATTTGATCGGTCTCTTTGGCAAGCTTATCTTTCGGTTAATAAGATATTTGCAGATAAAGTTATGGAAGTGATTAGCCCTGATGATGACTTTGTTTGGGTTCATGATTACCATTTGATGGTGTTGCCAACATTTTTGAGGAAGAGGTTTAACAGGGTGAAGCTTGGATTTTTCCTACATAGTCCATTTCCTTCATCTGAGATTTATCGAACTCTTCCTGTAAGAGATGAACTTCTTCGGGCATTGTTAAACTCTGATCTTATTGGCTTCCACACATTTGATTATGCTAGGCACTTTTTATCTTGCTGCGGAAGGATGCTTGGTTTGTCTTATCAATCTAAGCGAGGTTACATTGGGCTTGAATACTATGGTCGTACTGTGAGCATTAAGATTCTTCCTGTTGGTATCCATATAGGCCAGCTCCAAAATGTATTAAATCTCCCTGAGACTGTATCAAAAGTTGCAGAATTGCAAAATCGGTTTAAGGGTCGAACTGTTTTGCTTGGAGTTGATGATATGGACATATTTAAAGGAATCAGCCTGAAACTTCTGGCATTTGAACAATTGCTCCGACAACATCCCGAGAGATGGGGTAAAGCTGTGTTAGTGCAGATTGCAAACCCTGCAAGAGGCAGAGGGAAAGATGTGCAGGAGGTTGTGGCTGAAACTACTGCGACCGTGAATAGGATCAATGCAACATTCAGGAGGCCAGGATATGAGCCTGTGGTTTTGATTAACACTCCCTTGCAGTTTTATGAGCGAATCGCTTACTATGCAATTGCTGAGTGCTGCCTCGTTACTGCTGTGAGAGATGGGATGAATCTCATACCTTACGAGTACATTATATGTCGACAAGGCAACGAGAAGCTTGATGATGTTCTTGGTCTAAATCCTTCAACGGCAAAGAAGAGCATGTTAGTGCTGTCTGAGTTTATTGGATGTTCCCCATCTCTCAGTGGAGCTATTCGGGTTAACCCATGGAACATTGAAGCTGTAACCGAAGCGATGGATTCTGCTCTAGTAATCCCCGAAGCAGAAAAGCAATTACGACATGAAAAACATTATAGGTACGTTAGTACACATGATGTTGCATACTGGGCACGCAGCTTTTTGCAGGATCTGGGCAGGGCCTGCAGAGACCATTCAATGAGGAGATGCTGGGGTATAGGTTTTGGTTTAGGATTTCGAGTGATCGCTCTGGATCCAAATTTCAGGAAGCTTTCAGTTGATCATATTGTTTCAGTTTATAAGAGAACCTGCCGCCGTGCAATCTTGTTAGATTATGATGGTATCATGATGCTTCCGGGCTCAATTAGCATGAATCCAACTGCTGAAGCCCTTGGAATCTTGAACAACTTGTGTAAAGATCCTAAAAATGTTGTGTTCCTAGTTAGCGGAAAGGACCGAAAAACGCTTACAGAATGGTTTTCACCGTGCGAAAAGCTTGGACTAGCTGCAGAACATGGTTTTTATCTTAGGCCAAATCATACTGCAGATTGGGAGACGTGCATAAATGTGACTGATTTCGACTGGAAACAGATTGCAGAACCTGTTATGCAATTGTATACCGAGACAACTGATGGTTCTACAATCGAAACTAAAGAGAGTGCTCTTGTTTGGAACTACCTTTATGCTGATCCTGATTTCGGGTCGTGTCAGGCCAAGGAACTCTTAGATCACCTGGAAAGTGTTCTTGCTAATGAGCCAGTTTCTGTCAAGAGTGGCCAACACATTGTTGAAGTCAAACCTCAGGGTGTGAACAAGGGTATTGTAGCTGAACATCTCTTGCAATCAATGAAGGAGGCGGGAATGCATCCTGATTTCGTTCTATGCATCGGAGACGACAGGTCAGATGAGGATATGTTCGAGGTGATAGCAAGTGCAAAAGCCAACCTTCCTCCCAGTGCTGAACTGTTCGGTTGCACTGTCGGCCAGAAACCGAGCAAGGCCAAGTATTATTTGGAAGACACACACGAAATCTTGAGAATGTTACAAGGTCTCACCCATGCGTCGGAGCATGCTGCTAGAGCCGCTCTGCAGGCGACGCCGCATAGAGTTGTGATTGCAGAAAGTAAATAA 2595 44.28 MVSRSYSNLLELASGGCSPTFGLGREKKRLPRVATVAGVLSELDDDCCNSTGSDAPSTVAQDRMIIVGNQLPIRASRDENGDWGFSMDEDSLLLQLKDGLGEDVEVIYIGCLSEEVDPREQDEVAQTLLDRFKCVPTFLPPELFTKFYHGFCKQHLWPLFHYMLPLSPDLGGRFDRSLWQAYLSVNKIFADKVMEVISPDDDFVWVHDYHLMVLPTFLRKRFNRVKLGFFLHSPFPSSEIYRTLPVRDELLRALLNSDLIGFHTFDYARHFLSCCGRMLGLSYQSKRGYIGLEYYGRTVSIKILPVGIHIGQLQNVLNLPETVSKVAELQNRFKGRTVLLGVDDMDIFKGISLKLLAFEQLLRQHPERWGKAVLVQIANPARGRGKDVQEVVAETTATVNRINATFRRPGYEPVVLINTPLQFYERIAYYAIAECCLVTAVRDGMNLIPYEYIICRQGNEKLDDVLGLNPSTAKKSMLVLSEFIGCSPSLSGAIRVNPWNIEAVTEAMDSALVIPEAEKQLRHEKHYRYVSTHDVAYWARSFLQDLGRACRDHSMRRCWGIGFGLGFRVIALDPNFRKLSVDHIVSVYKRTCRRAILLDYDGIMMLPGSISMNPTAEALGILNNLCKDPKNVVFLVSGKDRKTLTEWFSPCEKLGLAAEHGFYLRPNHTADWETCINVTDFDWKQIAEPVMQLYTETTDGSTIETKESALVWNYLYADPDFGSCQAKELLDHLESVLANEPVSVKSGQHIVEVKPQGVNKGIVAEHLLQSMKEAGMHPDFVLCIGDDRSDEDMFEVIASAKANLPPSAELFGCTVGQKPSKAKYYLEDTHEILRMLQGLTHASEHAARAALQATPHRVVIAESK 864
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 7408572 7413694 - Sed0019094.1 Sed04g0856 709459
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed04g0856 864 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 63 550 - -
Sed04g0856 864 FunFam Alpha,alpha-trehalose-phosphate synthase [UDP-forming] 6 723 852 - -
Sed04g0856 864 Gene3D - 593 710 IPR023214 -
Sed04g0856 864 Gene3D - 723 854 IPR023214 -
Sed04g0856 864 PANTHER TREHALOSE-6-PHOSPHATE SYNTHASE 27 841 IPR001830 GO:0003824(InterPro)|GO:0004805(PANTHER)|GO:0005829(PANTHER)|GO:0005992(PANTHER)|GO:0005992(InterPro)|GO:0070413(PANTHER)
Sed04g0856 864 NCBIfam HAD-IIB family hydrolase 596 797 IPR006379 -
Sed04g0856 864 FunFam alpha,alpha-trehalose-phosphate synthase [UDP-forming] 6 56 314 - -
Sed04g0856 864 FunFam Alpha,alpha-trehalose-phosphate synthase 316 531 - -
Sed04g0856 864 CDD GT20_TPS 63 546 IPR001830 GO:0003824(InterPro)|GO:0005992(InterPro)
Sed04g0856 864 Pfam Glycosyltransferase family 20 63 546 IPR001830 GO:0003824(InterPro)|GO:0005992(InterPro)
Sed04g0856 864 Gene3D Glycogen Phosphorylase B; 315 531 - -
Sed04g0856 864 Pfam Trehalose-phosphatase 597 829 IPR003337 GO:0005992(InterPro)
Sed04g0856 864 SUPERFAMILY HAD-like 594 839 IPR036412 -
Sed04g0856 864 CDD HAD_TPP 595 831 - -
Sed04g0856 864 Gene3D Glycogen Phosphorylase B; 56 314 - -
Sed04g0856 864 FunFam alpha,alpha-trehalose-phosphate synthase [UDP-forming] 6 593 710 - -
Sed04g0856 864 NCBIfam trehalose-phosphatase 593 840 IPR003337 GO:0005992(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed04g0306 Sed-Chr4:2297443 Sed04g0856 Sed-Chr4:7408572 0.00E+00 dispersed
Sed04g0307 Sed-Chr4:2297443 Sed04g0856 Sed-Chr4:7408572 3.10E-291 dispersed
Sed04g0856 Sed-Chr4:7408572 Sed10g0215 Sed-Chr10:1234822 0.00E+00 dispersed
Sed04g0856 Sed-Chr4:7408572 Sed04g0857 Sed-Chr4:7408572 0.00E+00 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed04g0856 K16055 - csv:101207192 1669.06