Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed04g0861 ATGAGCTTTCAAGATGTGGAGGCGGGTCGGCCCTTTGCTTCTTCCAGGCGAGACCTCATCAATGGCAAACAAGATCCCACGCAGGCCGTTGCCTCTGGTATTTTTCAGATCAATACCGCCGTCGCTACGTTTCAGCGCCTTGTTAACACCTTAGGAACGCCCAAGGATACCCCCGACCTTCGCGACAAGCTGCACAAGACCAGGTTACACATTGGACAGTTGGTTAAAGACACCTCTGCTAAGCTTAAACTAGCCAGTGACATAGATCATCATGCTGAAGTTAATGCCAGCAAGAAAATTGCAGATGCTAAACTTGCGAAAGATTTTCAAGCAGTGTTGAAGGAGTTTCAGAAAGCTCAACGACTTGCAGCTGAGAGGGAAACAGCATATACACCTTTTGTTCCCCAGGCTGTTCTACCTTCTAGCTACACAGCCGGTGAGTCAGATACCAGCTCGGAAAAAAATCTTGAACAACGTGCCCTCCTTGTGCAATCCAGAAGACAAGAGGTCTTGTTGGATAATGAAATAGCCTTCAACGAGGCAATCATTGAGGAAAGAGAGCAAGGTATTCATGAAATCCAGCAACAAATTGGAGAAGTGAATGAAATTTTTAAAGATCTTGCTGTTTTAGTCCATGAACAGGGAGCCATGATTGATGATATTGGATCCAACATAGAAAGCTCCCATGCTGCAACGTCACAGGGAACGACTCAGCTCGTAAAAGCGTCGAAGACACAAAGATCAAATTCATCTCTGGCTTGCTTACTTTTGGTGATATTTGGTATAATCCTTCTCATTGTGATCATAATAGTTGTGGCATAA 822 44.77 MSFQDVEAGRPFASSRRDLINGKQDPTQAVASGIFQINTAVATFQRLVNTLGTPKDTPDLRDKLHKTRLHIGQLVKDTSAKLKLASDIDHHAEVNASKKIADAKLAKDFQAVLKEFQKAQRLAAERETAYTPFVPQAVLPSSYTAGESDTSSEKNLEQRALLVQSRRQEVLLDNEIAFNEAIIEEREQGIHEIQQQIGEVNEIFKDLAVLVHEQGAMIDDIGSNIESSHAATSQGTTQLVKASKTQRSNSSLACLLLVIFGIILLIVIIIVVA 273
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 7468115 7472715 - Sed0021549.1 Sed04g0861 709464
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed04g0861 273 FunFam Syntaxin-22 like 21 134 - -
Sed04g0861 273 SMART tSNARE_6 175 242 IPR000727 -
Sed04g0861 273 Pfam Syntaxin-like protein 30 130 IPR006011 GO:0016020(InterPro)
Sed04g0861 273 Gene3D - 21 134 - -
Sed04g0861 273 Pfam SNARE domain 217 268 IPR000727 -
Sed04g0861 273 Gene3D - 174 273 - -
Sed04g0861 273 ProSitePatterns Syntaxin / epimorphin family signature. 186 225 IPR006012 GO:0005484(InterPro)|GO:0006886(InterPro)|GO:0016020(InterPro)
Sed04g0861 273 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 180 242 IPR000727 -
Sed04g0861 273 PANTHER SYNTAXIN 36 263 IPR045242 GO:0000149(PANTHER)|GO:0005484(PANTHER)|GO:0006886(PANTHER)|GO:0006906(PANTHER)|GO:0012505(PANTHER)|GO:0016021(PANTHER)|GO:0031201(PANTHER)|GO:0048278(PANTHER)
Sed04g0861 273 CDD SynN 24 147 IPR006011 GO:0016020(InterPro)
Sed04g0861 273 SMART SynN_4 16 128 IPR006011 GO:0016020(InterPro)
Sed04g0861 273 SUPERFAMILY t-snare proteins 24 235 IPR010989 GO:0016020(InterPro)|GO:0016192(InterPro)
Sed04g0861 273 CDD SNARE_Qa 183 241 - -
Sed04g0861 273 MobiDBLite consensus disorder prediction 1 23 - -
Sed04g0861 273 FunFam Syntaxin-22 like 173 273 - -
Sed04g0861 273 Pfam Syntaxin 183 215 IPR006011 GO:0016020(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed02g0067 Sed-Chr2:8250840 Sed04g0861 Sed-Chr4:7468115 2.20E-125 dispersed
Sed02g0066 Sed-Chr2:8250840 Sed04g0861 Sed-Chr4:7468115 8.40E-128 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed04g0861 - - - 0.0