Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed04g0881 ATGAGTAGCAGTGAGATGGAGAAATCACCTAAACACAAGGAAACGAAGACACCGCCTCCTACTACCCAGGAGCAGACTTCAACCACTAGTGCTGGCGCAGTTAATCCTGATTGGTCCGGTTTTCAGGCATATTCTGCCATACCTAATGGGTTCTTGGCATCAAGCCCCCAAGTTTCCCACCCATATATGTGGGGAGTTCAGCATATTATGCCTTCTTATGGCACGTCTCCACATCCTTATGTTGCAATGTATCCCCCTGGTGGCATATATGCTCATCCTTCCATTCCTCCGGGAGCATATCCTTTTAGCCCATTTGCAATGCCTTCTCCAAATGGCATCACTGAGGCCTCTGGTAATACGGCAGGCAACTTAGATGGGAAGGTTAAGCTACCTGAAGTGAAGGAAAAGCTGTCAATTAAAAGATCAAAAGGAAGTTTGGGCAGTTTGAACATGATCACGGGGAAGAACAATGAGCTTAGTAAAACATCTGGAATATCTGCCAATGGAGCATACTCTAAAAGTGGTGACAGTGCCAGCGAAGGTACAAGCGAAGGAAGTGATGCCGATTCTCAAAATGAATCACAACCTAATTTAGGTTCCAGGCAAGACAATTTGGAAGTTGAAGCATCTCAGAATGGTAACTCCATGCATTGTACTCAAAACGGAGAATCTAAGTCTCAGGCAACGGCTCTCATTCCATTGGCTGCTGCTGGGGCCCCGGGAGTTGTTCCTGGTCCAACAACCAACTTAAATATTGGAATGGACTATTGGGGTGCATCATCTACTATCCCTGCAATGCGTGGAAAAGTTCCATCGACTCGGGATGGCGTACAGTCACAGCTTTGGTTGCAGGATGAGAGAGAGCTTAAAAAACAGAGAAGAAAGCAATCAAACAGAGAATCTGCACGACGATCGCGGCTACGCAAGCAGACAGAATGTGACGAGCTAGCGCACCGTGCTGAAGCTTTACAAGAAGAAAATGCTAGTCTTAGGTCTGAAGTGAACCGGATAAGGAGTGAATATGAACAGCTACTTTCAGAGAATGCTTCTCTTAAGGAAAAACTCAAAAAGGTTCTGGGAAATAAAGACGCAAGGGCCAGCGGGAATGGTCAGCATTCGAGTAACGAAACTACATAA 1137 45.91 MSSSEMEKSPKHKETKTPPPTTQEQTSTTSAGAVNPDWSGFQAYSAIPNGFLASSPQVSHPYMWGVQHIMPSYGTSPHPYVAMYPPGGIYAHPSIPPGAYPFSPFAMPSPNGITEASGNTAGNLDGKVKLPEVKEKLSIKRSKGSLGSLNMITGKNNELSKTSGISANGAYSKSGDSASEGTSEGSDADSQNESQPNLGSRQDNLEVEASQNGNSMHCTQNGESKSQATALIPLAAAGAPGVVPGPTTNLNIGMDYWGASSTIPAMRGKVPSTRDGVQSQLWLQDERELKKQRRKQSNRESARRSRLRKQTECDELAHRAEALQEENASLRSEVNRIRSEYEQLLSENASLKEKLKKVLGNKDARASGNGQHSSNETT 378
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 7920364 7926800 - Sed0017623.1 Sed04g0881 709484
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed04g0881 378 Pfam Disordered region downstream of MFMR 135 262 - -
Sed04g0881 378 MobiDBLite consensus disorder prediction 19 35 - -
Sed04g0881 378 MobiDBLite consensus disorder prediction 288 311 - -
Sed04g0881 378 Gene3D - 289 343 - -
Sed04g0881 378 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 293 308 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed04g0881 378 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 288 351 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed04g0881 378 Coils Coil 306 361 - -
Sed04g0881 378 SUPERFAMILY Leucine zipper domain 289 345 IPR046347 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed04g0881 378 MobiDBLite consensus disorder prediction 157 200 - -
Sed04g0881 378 PANTHER G-BOX-BINDING FACTOR 3-RELATED 23 364 IPR044827 GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0006355(InterPro)|GO:0043565(InterPro)|GO:0043565(PANTHER)
Sed04g0881 378 Pfam G-box binding protein MFMR 1 96 IPR012900 -
Sed04g0881 378 SMART brlzneu 286 350 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed04g0881 378 MobiDBLite consensus disorder prediction 1 18 - -
Sed04g0881 378 Pfam bZIP transcription factor 286 348 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed04g0881 378 CDD bZIP_plant_GBF1 291 341 IPR045314 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed04g0881 378 MobiDBLite consensus disorder prediction 1 35 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed02g0111 Sed-Chr2:22194879 Sed04g0881 Sed-Chr4:7920364 1.70E-93 dispersed
Sed04g0881 Sed-Chr4:7920364 Sed05g0254 Sed-Chr5:1493170 1.80E-78 dispersed
Sed02g0056 Sed-Chr2:5490427 Sed04g0881 Sed-Chr4:7920364 4.50E-134 wgd
Sed04g0881 Sed-Chr4:7920364 Sed05g0253 Sed-Chr5:1493170 4.80E-92 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
38082 PF16596 MFMR_assoc 4.00E-47 No_clan Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed04g0881 K09060 - csv:101206627 590.497