Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed04g0896 ATGTTTACATGCATAGCATGTACGAAACAGACAGACGACGGGGGTGAGGATGGGGCTGCGCGTGGGACTGGCACGCCTAGTACAAGGGAAGCCGTCAAAAGCCTGACAACGCAGATTAAGGACATGGCGTTGAAATTCTCTGGTGCTTATAGGCAGTGCAAACCCTGCACAGGCTCAAGCAGCTATAAGAAAGGACAGAGACCTTACCCAGATTTTGACACTGCTTCAGAAGGGGTTCCATATCCCTACATTGGAGGAGGGGCAAGTGCAAGTTCAACACCCGCTTGGGACTTCCCTCGTGTGAACCGGAACCCGCACGCGAGATCCGACTCAAGATTTAAAGGAGGGGTGTTCAGAGGAGACCAGACCCCTGGAGCCGATTCAACCATATCAGCATGTGATGTGGTGCTTGAAGATGATGAGTCCAAAGAGTGGATGGCACAGGTGGAGCCTGGTGTCCACATTACTTTTGTGTCTCTTCCCAATGGAGGCAATGATTTAAAACGAATTCGTTTCAATCGAGAAATGTTCAACAAATGGCAAGCTCAGCGATGGTGGGGCGAGAACTATGACAGAATTACGGAGCTTTATAATGTCCAGAGATTCAACCAACAAGATCTTCATACGCCACCAAGAACTGAGGATGGGAGGGATTCTTCTTACTCCAAGATGGGAAGGGATAGTCCGATGGATTCATCGAACAAAAATTGGACACCGAAAAACTACAAACCTTCTGGAAGCAAAGGTTATTTTTCATCTGACCAGCATTTTGATCATGGAAACAGCCAGCTCTATGCAGGTTCAGGTGCTTATCCAGCAGGGGGTGCAAAAGGCGACATGGCATCTGTGGAAGCATCACGCACGACTACCTCTTCTAGAGACGAAGCTTCGGTTTCCATTAGTAATGCAAGTGACATCGAGGCGGAATGGGTGGAGGAAGACGAACCTGGGGTCTATATAACAATCAGGCAGCTTATTGATGGCACTAGAGAGCTTCGCCGTGTCAGATTCAGCCGTGAACGGTTCGGGGAGATGAACGCGAAGCAATGGTGGGATCATAATAGGGAGAGAATCCAAGCTCAGTACCTTTAA 1092 48.81 MFTCIACTKQTDDGGEDGAARGTGTPSTREAVKSLTTQIKDMALKFSGAYRQCKPCTGSSSYKKGQRPYPDFDTASEGVPYPYIGGGASASSTPAWDFPRVNRNPHARSDSRFKGGVFRGDQTPGADSTISACDVVLEDDESKEWMAQVEPGVHITFVSLPNGGNDLKRIRFNREMFNKWQAQRWWGENYDRITELYNVQRFNQQDLHTPPRTEDGRDSSYSKMGRDSPMDSSNKNWTPKNYKPSGSKGYFSSDQHFDHGNSQLYAGSGAYPAGGAKGDMASVEASRTTTSSRDEASVSISNASDIEAEWVEEDEPGVYITIRQLIDGTRELRRVRFSRERFGEMNAKQWWDHNRERIQAQYL 363
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 8084261 8092992 + Sed0015126.1 Sed04g0896 709499
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed04g0896 363 Pfam Transcription factor regulating root and shoot growth via Pin3 143 197 IPR013591 -
Sed04g0896 363 Pfam Transcription factor regulating root and shoot growth via Pin3 307 362 IPR013591 -
Sed04g0896 363 MobiDBLite consensus disorder prediction 204 241 - -
Sed04g0896 363 MobiDBLite consensus disorder prediction 208 224 - -
Sed04g0896 363 ProSiteProfiles BRX domain profile. 308 363 IPR013591 -
Sed04g0896 363 ProSiteProfiles BRX domain profile. 143 198 IPR013591 -
Sed04g0896 363 MobiDBLite consensus disorder prediction 107 126 - -
Sed04g0896 363 MobiDBLite consensus disorder prediction 225 241 - -
Sed04g0896 363 Pfam Transcription factor BRX N-terminal domain 25 56 IPR027988 -
Sed04g0896 363 PANTHER PROTEIN BREVIS RADIX-LIKE 1 1 363 IPR044532 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed02g0029 Sed-Chr2:4416114 Sed04g0896 Sed-Chr4:8084261 3.70E-183 dispersed
Sed02g0030 Sed-Chr2:4416114 Sed04g0896 Sed-Chr4:8084261 1.40E-164 dispersed
Sed04g0896 Sed-Chr4:8084261 Sed09g1663 Sed-Chr9:40052569 1.40E-80 dispersed
Sed02g0028 Sed-Chr2:4416114 Sed04g0896 Sed-Chr4:8084261 2.50E-183 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed04g0896 - - - 0.0