Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed04g0896 | ATGTTTACATGCATAGCATGTACGAAACAGACAGACGACGGGGGTGAGGATGGGGCTGCGCGTGGGACTGGCACGCCTAGTACAAGGGAAGCCGTCAAAAGCCTGACAACGCAGATTAAGGACATGGCGTTGAAATTCTCTGGTGCTTATAGGCAGTGCAAACCCTGCACAGGCTCAAGCAGCTATAAGAAAGGACAGAGACCTTACCCAGATTTTGACACTGCTTCAGAAGGGGTTCCATATCCCTACATTGGAGGAGGGGCAAGTGCAAGTTCAACACCCGCTTGGGACTTCCCTCGTGTGAACCGGAACCCGCACGCGAGATCCGACTCAAGATTTAAAGGAGGGGTGTTCAGAGGAGACCAGACCCCTGGAGCCGATTCAACCATATCAGCATGTGATGTGGTGCTTGAAGATGATGAGTCCAAAGAGTGGATGGCACAGGTGGAGCCTGGTGTCCACATTACTTTTGTGTCTCTTCCCAATGGAGGCAATGATTTAAAACGAATTCGTTTCAATCGAGAAATGTTCAACAAATGGCAAGCTCAGCGATGGTGGGGCGAGAACTATGACAGAATTACGGAGCTTTATAATGTCCAGAGATTCAACCAACAAGATCTTCATACGCCACCAAGAACTGAGGATGGGAGGGATTCTTCTTACTCCAAGATGGGAAGGGATAGTCCGATGGATTCATCGAACAAAAATTGGACACCGAAAAACTACAAACCTTCTGGAAGCAAAGGTTATTTTTCATCTGACCAGCATTTTGATCATGGAAACAGCCAGCTCTATGCAGGTTCAGGTGCTTATCCAGCAGGGGGTGCAAAAGGCGACATGGCATCTGTGGAAGCATCACGCACGACTACCTCTTCTAGAGACGAAGCTTCGGTTTCCATTAGTAATGCAAGTGACATCGAGGCGGAATGGGTGGAGGAAGACGAACCTGGGGTCTATATAACAATCAGGCAGCTTATTGATGGCACTAGAGAGCTTCGCCGTGTCAGATTCAGCCGTGAACGGTTCGGGGAGATGAACGCGAAGCAATGGTGGGATCATAATAGGGAGAGAATCCAAGCTCAGTACCTTTAA | 1092 | 48.81 | MFTCIACTKQTDDGGEDGAARGTGTPSTREAVKSLTTQIKDMALKFSGAYRQCKPCTGSSSYKKGQRPYPDFDTASEGVPYPYIGGGASASSTPAWDFPRVNRNPHARSDSRFKGGVFRGDQTPGADSTISACDVVLEDDESKEWMAQVEPGVHITFVSLPNGGNDLKRIRFNREMFNKWQAQRWWGENYDRITELYNVQRFNQQDLHTPPRTEDGRDSSYSKMGRDSPMDSSNKNWTPKNYKPSGSKGYFSSDQHFDHGNSQLYAGSGAYPAGGAKGDMASVEASRTTTSSRDEASVSISNASDIEAEWVEEDEPGVYITIRQLIDGTRELRRVRFSRERFGEMNAKQWWDHNRERIQAQYL | 363 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 8084261 | 8092992 | + | Sed0015126.1 | Sed04g0896 | 709499 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed04g0896 | 363 | Pfam | Transcription factor regulating root and shoot growth via Pin3 | 143 | 197 | IPR013591 | - | |
Sed04g0896 | 363 | Pfam | Transcription factor regulating root and shoot growth via Pin3 | 307 | 362 | IPR013591 | - | |
Sed04g0896 | 363 | MobiDBLite | consensus disorder prediction | 204 | 241 | - | - | |
Sed04g0896 | 363 | MobiDBLite | consensus disorder prediction | 208 | 224 | - | - | |
Sed04g0896 | 363 | ProSiteProfiles | BRX domain profile. | 308 | 363 | IPR013591 | - | |
Sed04g0896 | 363 | ProSiteProfiles | BRX domain profile. | 143 | 198 | IPR013591 | - | |
Sed04g0896 | 363 | MobiDBLite | consensus disorder prediction | 107 | 126 | - | - | |
Sed04g0896 | 363 | MobiDBLite | consensus disorder prediction | 225 | 241 | - | - | |
Sed04g0896 | 363 | Pfam | Transcription factor BRX N-terminal domain | 25 | 56 | IPR027988 | - | |
Sed04g0896 | 363 | PANTHER | PROTEIN BREVIS RADIX-LIKE 1 | 1 | 363 | IPR044532 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed02g0029 | Sed-Chr2:4416114 | Sed04g0896 | Sed-Chr4:8084261 | 3.70E-183 | dispersed | |
Sed02g0030 | Sed-Chr2:4416114 | Sed04g0896 | Sed-Chr4:8084261 | 1.40E-164 | dispersed | |
Sed04g0896 | Sed-Chr4:8084261 | Sed09g1663 | Sed-Chr9:40052569 | 1.40E-80 | dispersed | |
Sed02g0028 | Sed-Chr2:4416114 | Sed04g0896 | Sed-Chr4:8084261 | 2.50E-183 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed04g0896 | - | - | - | 0.0 |