Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Sed04g0901 | ATGGAAGCGCCGCCGCAGCTGACCGAAGGAGGAGTGCTGGTGATATGCAAGAGGGAATCGTCGGCAGACACGTTCAAGCCGGTCGTGCAAGTGATCGACTTGAAATTGGTGAACACTGCGCAGCAATCGGGCAGCGAGAGGTATAGATTGTTGCTTTCCGATGGCGCCCATTACCAGCAGGGAATGTTGGGCACTCAGTTGAATGGATTGGTCAAGTCCGGGAAGTTGCAGAAGGGTTCTGTAGTCCTACTGAAGCAATATGTTTGTAACCCCGTTCAAGAACGCCTGATTATAATTGTCATCGAGTTGGATGTGCTAGCGGAAATGTGTGAATTTATCGGTGAGCCTGTACCAGCTATGAGATCATTAACAGGTGCATTTAGTGGAAACCCCCAATCCTCTGTGGGGACTCCACCCAGCAGTGGAATGGTTGGTAAGGTGAATGTATCTGGTGCGTCTTTTGAACAGCCTAAAGTTAATCAATCATATACACCGCATGTGGGAGCCTATTCTAACACTCCTGAATCTGTAAGACACGCTGCATCAATTGCACCTAAGATTGAACCCAGAACAAGGTTTAACGGGCCATCTCCTTTAAGTGGGTCATATGGTGATCAGAAGATGGCATATCACAACAATGGATCAGACATTCCAAGGCCACCTCTAAATTCTTATGCCCGTCCTCAGCCAACATATCAGCAGCCACCTCCAATGTACAGTAACAAAGGACCAGTAGCTAGAAACGAAGCTGCCCCAAGGATAATGCCTATTACTGCTCTTAACCCTTACCAAGGACGGTGGACAATAAAGGCTCGAGTTACTTCAAAAGGAGAACTTAGACACTACAATAATCCTCGTGGCGATGGGAAAGTGTTTTCATTTGATCTACTTGATGCGTACCGTGGAGAAATACGAGTAACGTGCTTCAATACGGTAGCTGATCAATTTTACAATCAGATTGAATCTGGTAAAGTATACTTAATTTCGAAAGGAAGCTTGAAACCTGCTCAAAAGAACTTCAACCATCTAAAAAATGACTATGAAATCTTTCTTGAGAGCACATCAACAATCCAACACTGCTTCGAGGATGACCAATCGATCCCCCAACAGCAGTTTCATTTCCAACAGATTAATGAGATTGAAGGCATGGACAGCAACAGTGTTGTCGATTTAATTGGTATTGTATCCTCCATCAATCCTGCAACTTCCCTGATGAGAAAAAATGGTACTGAGACTCAGAAGAGATCCCTGCAGTTGAAAGATTTGTCTGGCCGAAGTGTTGAATTGACTCTTTGGGGAAACTTTTGTCAAGCAGAAGGGCAAAGATTGCAAAATATGTGTGACTCGGGCTTGTTTCCAGTTTTGGCTGTGAAATCTGCTAGGGTGAGTGACTTCAATGGGAAGGCTGTGGGAACCATTTCAACAAGTCAGCTTTTTGTTGAGCCAGATTTCCCCGAGGCTCGTTCACTGAGAGAGTGGTTTGAGAAGGAAGGGAAGAGTACTCCGTCTGTCTCTATATCAAGGGAAGTTTCTAGTGTAGGCAGGATGGATGTCCGTAAGACCATATCTCAAATAAAAGATGAGAGATTAGGAACCTCCGAGAAGCCAGATTGGATTACTGTTAGTGCAACTATTTCATTTATCAAGGTCGACAACTTCTGTTACACAGCGTGTCCTATTATGATGGGGGATCGACAATGTAGCAAAAAGGTTACAAATAATGGAGATGGAAAATGGAGATGTGAGCGGTGTGATCAGTCTGTTGACGAATGTGACTACAGGTACATACTGCAGCTGCAAATACAGGATCATACCGGCTTAACTTGGGTTACTGCATTTCAAGAAGGTGGTGAGGAGATCATGGGCATACCTGCAAAAAGATTGTATTATTTGAAATATGAAGAGCAAGATGACGAAAAATTTGCAGAAATCATTCGTAAGGTTCTGTTCACAAAATTTATTATGAAGTTGAAAATAAAGGAAGAGACTTTTAGTGATGAACAGAGAGTAAGGTCAACTGTGGTGAAAGCAGAAAGCATTAACTTTTCGAACGAGTCTCGGTTTCTACTAGATTTGATGGAAAAGCTGAGGGCCGATAACACTAGTTCTTTTACTCCAAAGACTGACAGCACCGTACAAAATCCCGTACTACATAGCCATGGAGCTGGGAATGTTGGCGGTGGACAATTTGCATCACCTATTCGAAATAGTACCAATATTAGCAGAGAATATGGTACTCCAAATCAATCTGTTCAGTACGGGAACCAGTACAACAGTGCTAGGCCTTCTCCATCCATGATGCTTAACTCGCACACATACTGCAACAGCTGTGGAGGCTCTGGTCACAGCTCAGTCAACTGCCCGAGTATCATGAGCGGTCCTTCACCTCCCGTTGGAGGGGGGATGTATTTGAATCGATCTTCTGGCTCTTCTGGTGGTGCCTCTGGGGAATGCTTTAAATGCCATCAAACTGGGCACTGGGCTAGGGATTGCCCTGGTTTGAGCACTGTCCCTCCAGCTTATGGCAACAGTGGCTTTACAGCTAGGCAGGGAGGTTTCTAA | 2562 | 44.57 | MEAPPQLTEGGVLVICKRESSADTFKPVVQVIDLKLVNTAQQSGSERYRLLLSDGAHYQQGMLGTQLNGLVKSGKLQKGSVVLLKQYVCNPVQERLIIIVIELDVLAEMCEFIGEPVPAMRSLTGAFSGNPQSSVGTPPSSGMVGKVNVSGASFEQPKVNQSYTPHVGAYSNTPESVRHAASIAPKIEPRTRFNGPSPLSGSYGDQKMAYHNNGSDIPRPPLNSYARPQPTYQQPPPMYSNKGPVARNEAAPRIMPITALNPYQGRWTIKARVTSKGELRHYNNPRGDGKVFSFDLLDAYRGEIRVTCFNTVADQFYNQIESGKVYLISKGSLKPAQKNFNHLKNDYEIFLESTSTIQHCFEDDQSIPQQQFHFQQINEIEGMDSNSVVDLIGIVSSINPATSLMRKNGTETQKRSLQLKDLSGRSVELTLWGNFCQAEGQRLQNMCDSGLFPVLAVKSARVSDFNGKAVGTISTSQLFVEPDFPEARSLREWFEKEGKSTPSVSISREVSSVGRMDVRKTISQIKDERLGTSEKPDWITVSATISFIKVDNFCYTACPIMMGDRQCSKKVTNNGDGKWRCERCDQSVDECDYRYILQLQIQDHTGLTWVTAFQEGGEEIMGIPAKRLYYLKYEEQDDEKFAEIIRKVLFTKFIMKLKIKEETFSDEQRVRSTVVKAESINFSNESRFLLDLMEKLRADNTSSFTPKTDSTVQNPVLHSHGAGNVGGGQFASPIRNSTNISREYGTPNQSVQYGNQYNSARPSPSMMLNSHTYCNSCGGSGHSSVNCPSIMSGPSPPVGGGMYLNRSSGSSGGASGECFKCHQTGHWARDCPGLSTVPPAYGNSGFTARQGGF | 853 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 4 | 8128451 | 8133466 | - | Sed0000920.1 | Sed04g0901 | 709504 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Sed04g0901 | 853 | MobiDBLite | consensus disorder prediction | 183 | 243 | - | - | |
| Sed04g0901 | 853 | ProSiteProfiles | Zinc finger CCHC-type profile. | 774 | 789 | IPR001878 | GO:0003676(InterPro)|GO:0008270(InterPro) | |
| Sed04g0901 | 853 | CDD | RPA1_DBD_C | 522 | 695 | IPR047192 | - | |
| Sed04g0901 | 853 | Gene3D | - | 253 | 362 | IPR012340 | - | |
| Sed04g0901 | 853 | SUPERFAMILY | Retrovirus zinc finger-like domains | 804 | 836 | IPR036875 | GO:0003676(InterPro)|GO:0008270(InterPro) | |
| Sed04g0901 | 853 | ProSiteProfiles | Zinc finger CCHC-type profile. | 818 | 832 | IPR001878 | GO:0003676(InterPro)|GO:0008270(InterPro) | |
| Sed04g0901 | 853 | FunFam | Replication protein A subunit | 6 | 120 | - | - | |
| Sed04g0901 | 853 | FunFam | Replication protein A subunit | 505 | 696 | - | - | |
| Sed04g0901 | 853 | SUPERFAMILY | Nucleic acid-binding proteins | 5 | 114 | IPR012340 | - | |
| Sed04g0901 | 853 | SUPERFAMILY | Nucleic acid-binding proteins | 519 | 696 | IPR012340 | - | |
| Sed04g0901 | 853 | Pfam | Replication factor-A protein 1, N-terminal domain | 7 | 107 | IPR007199 | GO:0003677(InterPro)|GO:0005634(InterPro)|GO:0006260(InterPro) | |
| Sed04g0901 | 853 | Gene3D | - | 770 | 836 | - | - | |
| Sed04g0901 | 853 | CDD | RPA1_DBD_A | 256 | 359 | - | - | |
| Sed04g0901 | 853 | Gene3D | - | 5 | 120 | IPR012340 | - | |
| Sed04g0901 | 853 | SUPERFAMILY | Nucleic acid-binding proteins | 253 | 365 | IPR012340 | - | |
| Sed04g0901 | 853 | SUPERFAMILY | Nucleic acid-binding proteins | 372 | 500 | IPR012340 | - | |
| Sed04g0901 | 853 | Gene3D | - | 366 | 503 | IPR012340 | - | |
| Sed04g0901 | 853 | NCBIfam | replication factor-a protein 1 (rpa1) | 209 | 695 | IPR004591 | GO:0003677(InterPro)|GO:0005634(InterPro)|GO:0006260(InterPro)|GO:0006281(InterPro)|GO:0006310(InterPro) | |
| Sed04g0901 | 853 | SMART | c2hcfinal6 | 773 | 789 | IPR001878 | GO:0003676(InterPro)|GO:0008270(InterPro) | |
| Sed04g0901 | 853 | SMART | c2hcfinal6 | 817 | 833 | IPR001878 | GO:0003676(InterPro)|GO:0008270(InterPro) | |
| Sed04g0901 | 853 | FunFam | Replication protein A subunit | 253 | 363 | - | - | |
| Sed04g0901 | 853 | Pfam | OB-fold nucleic acid binding domain | 267 | 353 | IPR004365 | GO:0003676(InterPro) | |
| Sed04g0901 | 853 | Pfam | Zinc knuckle | 817 | 832 | IPR001878 | GO:0003676(InterPro)|GO:0008270(InterPro) | |
| Sed04g0901 | 853 | FunFam | Replication protein A subunit | 366 | 504 | - | - | |
| Sed04g0901 | 853 | MobiDBLite | consensus disorder prediction | 730 | 751 | - | - | |
| Sed04g0901 | 853 | PANTHER | REPLICATION FACTOR A 1, RFA1 | 256 | 676 | IPR004591 | GO:0000724(PANTHER)|GO:0003677(InterPro)|GO:0003684(PANTHER)|GO:0005634(InterPro)|GO:0005662(PANTHER)|GO:0006260(InterPro)|GO:0006281(InterPro)|GO:0006289(PANTHER)|GO:0006310(InterPro)|GO:0007004(PANTHER)|GO:0043047(PANTHER)|GO:0051321(PANTHER) | |
| Sed04g0901 | 853 | CDD | RPA1_DBD_B | 388 | 495 | - | - | |
| Sed04g0901 | 853 | CDD | RPA1N | 10 | 107 | IPR007199 | GO:0003677(InterPro)|GO:0005634(InterPro)|GO:0006260(InterPro) | |
| Sed04g0901 | 853 | Gene3D | - | 504 | 696 | IPR012340 | - | |
| Sed04g0901 | 853 | Pfam | Replication protein A OB domain | 377 | 480 | IPR031657 | - | |
| Sed04g0901 | 853 | Pfam | Replication factor-A C terminal domain | 538 | 689 | IPR013955 | - | |
| Sed04g0901 | 853 | MobiDBLite | consensus disorder prediction | 195 | 209 | - | - | |
| Sed04g0901 | 853 | MobiDBLite | consensus disorder prediction | 720 | 751 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Sed03g1813 | Sed-Chr3:12025533 | Sed04g0901 | Sed-Chr4:8128451 | 3.70E-198 | dispersed | |
| Sed04g0901 | Sed-Chr4:8128451 | Sed12g2011 | Sed-Chr12:30971864 | 2.00E-77 | dispersed | |
| Sed04g0901 | Sed-Chr4:8128451 | Sed08g0277 | Sed-Chr8:1617414 | 9.00E-78 | transposed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Sed04g0901 | K07466 | - | csv:101211358 | 1451.03 |