Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed04g0924 ATGGGCAGGATGGGTGGCCGCCATAGAACCTACTCCGCCAACTCCGCCGACTACAACCTCCTCGAAGAAATCGGTTACGGTGCTAGCGCCACTGTTCATCGAGCCATCTATACTCCCTCCAGTGAAGTTGTTGCCATCAAGTGCTTGGATCTTGATCGCTGTAATAGTAATCTAGATGATATACGCAGGGAGGCTCAAACGATGAGTTTGATAGATCATCCGAACCTTGTAAGGGCTTATTGTTCATTTGTTGTTGAACGAAACCTTTGGGTTGTCATGCCATTCATGGCAGAAGGTTCTTGTTTGCACCTAATGAAGACATCGTACTCAGATGGCTTTGAAGAGGTTGCTATATGTTCTATCCTGAAAGAAACTCTTAAAGCTTTGGAGTACCTTCATCGACAGGGACACATACATCGGGATGTGAAGGCTGGAAATATACTACTTGATAGTAATGGGTCTGTGAAGCTTGCTGATTTTGGTGTTTCGGCTTGCATGTTTGATACAGGTGATAGACGGCGCTCCAGAAATACCTTTGTAGGAACACCATGCTGGATGGCGCCGGAGGTATTGCAACCAGGAACTGGATATAATTTCAAGGCCGATATATGGTCCTTTGGTATTACAGCCTTGGAGTTGGCCCATGGTCATGCACCATTTTCAAAATATCCTCCAATGAAGGTGCTTCTTATGACCATACAAAATGCTCCTCCTGGGCTGGATTATGACAGAGATAAAAAGTTCTCCAAGTCTTTTAAAGAAATGGTTGCAATGTGCCTGGTGAAAGATCAAACCAAGAGACCAACAGCTGAGAAACTTTTAAAGCACTCTTTTTTCAAGAATGCTAAGCCTCCAGAGCTTTCTTTGAAGAAATTATTTGCTAACTTGCCTCCTCTTTCACATCGTGTAAAGGATCTGCAGCTTAAAGATGCTGCCCAGCTAGCCTTAAAGAAAATGCCTTCAGCGGAGCAAGAAGCATTATCACAGAGTGAGTACCAGCGAGGAGTTAGTGCATGGAACTTTGATGTCGAGGATTTGAAAGCCCAAGCTTCCTTGGTGAATGATGATATGGCAGAGATGAAGGAAGAGGAGGAGAATATAAATTATTGTAATGCTAAGGATGTCTTTTTTCCTCAATCTAGTCTGAGGAATTTCAGTTCATGTAATGAATCATCTCAGGATGAGCATGGAGTAGGGGCAAGTGGTCAGGGTTTGCCACAAGTGGACTGTTTGAGCAAAAAGGGTAATTTTATGGAAAGCGATATGGTAAAAGCTGAGTCCCAAGAAAAAACTGGATGGAAGAGAAATGGAACTGGCACTGAAGTAGAAGCATCTACCTCTGGCCAAGAGATTGTACAAGGCAAGATCAAAACCCAAATGCCAAAAGGTCGTCAAACACAAAGTGGTCCACTTCTACCTGGTACTGTACTGAGTCATTCTTTATCAGAAAGAGTGCGAGGCTCTGAGAGGTTTGATTCTGAAATTCAACCATGTACTGAAAAAACCCGTCGAGAAGCAAGGCAAGCTCCAAGCTTCAGTGGTCCACTAATGCTGCCAAATCGCGCCTCAGCAAACAGCCTATCAGCTCCCATAAAACCTTCTGGAGGGTATAGAGATTCAATGGATGACAAATCGAAAGCTAATCTTGTGCAAATTAAGGGGCGTTTTTCAGTGACGTCAGAGAGCCTAGATCTCGTAAAGGATATTCCATTGAGCACGGTTTCACGACGGCCTTCACAGAACTCACCTCTACGAAAGTCAGCTAGTGTCGGTGATTGGATATTTGATTCCAAGCAGTCTGTCAGCCAACCCCCTAAGGAGGCTTCCAACATCAACGGGCCTACATCATTTCTTATGCCTCATCTTCAGAATCTTTTCCATCAAACCTCAATTCAACAGGATCTTATAGTGAACTTGTTGAATAGCTTACAAACATCAGACATGATCGATGCTACTCAAAATGGGAAGTTGCCTCCATTGCCTCGGAGCTCGGAGAATAATGGAAGTGTTGAAACAGCAGCAGTTGAGAGAGAGCGTTCGCTGCTGCGGAAGGTCTCCGAACTTCAAGCCAGAATGACGCATTTGACTTACGAATTGACTGCTGAAAAGTTAAAATACATTCAATTACAAGAGCAGTTCAACTCAGCATCTAGTCAAGAAGAAAACGAGATCAAGAGGGAAGAGAACGTCTGA 2193 43.91 MGRMGGRHRTYSANSADYNLLEEIGYGASATVHRAIYTPSSEVVAIKCLDLDRCNSNLDDIRREAQTMSLIDHPNLVRAYCSFVVERNLWVVMPFMAEGSCLHLMKTSYSDGFEEVAICSILKETLKALEYLHRQGHIHRDVKAGNILLDSNGSVKLADFGVSACMFDTGDRRRSRNTFVGTPCWMAPEVLQPGTGYNFKADIWSFGITALELAHGHAPFSKYPPMKVLLMTIQNAPPGLDYDRDKKFSKSFKEMVAMCLVKDQTKRPTAEKLLKHSFFKNAKPPELSLKKLFANLPPLSHRVKDLQLKDAAQLALKKMPSAEQEALSQSEYQRGVSAWNFDVEDLKAQASLVNDDMAEMKEEEENINYCNAKDVFFPQSSLRNFSSCNESSQDEHGVGASGQGLPQVDCLSKKGNFMESDMVKAESQEKTGWKRNGTGTEVEASTSGQEIVQGKIKTQMPKGRQTQSGPLLPGTVLSHSLSERVRGSERFDSEIQPCTEKTRREARQAPSFSGPLMLPNRASANSLSAPIKPSGGYRDSMDDKSKANLVQIKGRFSVTSESLDLVKDIPLSTVSRRPSQNSPLRKSASVGDWIFDSKQSVSQPPKEASNINGPTSFLMPHLQNLFHQTSIQQDLIVNLLNSLQTSDMIDATQNGKLPPLPRSSENNGSVETAAVERERSLLRKVSELQARMTHLTYELTAEKLKYIQLQEQFNSASSQEENEIKREENV 730
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 8510267 8526431 - Sed0026622.1 Sed04g0924 709527
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed04g0924 730 MobiDBLite consensus disorder prediction 422 449 - -
Sed04g0924 730 CDD STKc_OSR1_SPAK 17 279 - -
Sed04g0924 730 Pfam Protein kinase domain 18 279 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed04g0924 730 MobiDBLite consensus disorder prediction 432 449 - -
Sed04g0924 730 SUPERFAMILY Protein kinase-like (PK-like) 17 334 IPR011009 -
Sed04g0924 730 MobiDBLite consensus disorder prediction 653 673 - -
Sed04g0924 730 Gene3D Phosphorylase Kinase; domain 1 7 95 - -
Sed04g0924 730 ProSitePatterns Protein kinases ATP-binding region signature. 24 47 IPR017441 GO:0005524(InterPro)
Sed04g0924 730 SMART serkin_6 18 279 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed04g0924 730 MobiDBLite consensus disorder prediction 499 542 - -
Sed04g0924 730 ProSiteProfiles Protein kinase domain profile. 18 279 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed04g0924 730 Coils Coil 343 363 - -
Sed04g0924 730 Gene3D Transferase(Phosphotransferase) domain 1 99 330 - -
Sed04g0924 730 FunFam Serine/threonine-protein kinase BLUS1 7 95 - -
Sed04g0924 730 PANTHER SERINE/THREONINE-PROTEIN KINASE FRAY2 10 709 IPR047173 GO:0043539(InterPro)
Sed04g0924 730 FunFam serine/threonine-protein kinase BLUS1-like isoform X2 99 329 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed04g0924 Sed-Chr4:8510267 Sed04g0926 Sed-Chr4:8510267 0.00E+00 dispersed
Sed04g0924 Sed-Chr4:8510267 Sed04g0925 Sed-Chr4:8510267 0.00E+00 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
78970 PF00069 Pkinase 9.70E-60 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed04g0924 - - - 0.0