Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed04g0926 ATGAGTTTGATAGATCATCCGAACCTTGTAAGGGCTTATTGTTCATTTGTTGTTGAACGAAACCTTTGGGTTGTCATGCCATTCATGGCAGAAGGTTCTTGTTTGCACCTAATGAAGACATCGTACTCAGATGGCTTTGAAGAGGTTGCTATATGTTCTATCCTGAAAGAAACTCTTAAAGCTTTGGAGTACCTTCATCGACAGGGACACATACATCGGGATGTGAAGGCTGGAAATATACTACTTGATAGTAATGGGTCTGTGAAGCTTGCTGATTTTGGTGTTTCGGCTTGCATGTTTGATACAGGTGATAGACGGCGCTCCAGAAATACCTTTGTAGGAACACCATGCTGGATGGCGCCGGAGGTATTGCAACCAGGAACTGGATATAATTTCAAGGCCGATATATGGTCCTTTGGTATTACAGCCTTGGAGTTGGCCCATGGTCATGCACCATTTTCAAAATATCCTCCAATGAAGGTGCTTCTTATGACCATACAAAATGCTCCTCCTGGGCTGGATTATGACAGAGATAAAAAGTTCTCCAAGTCTTTTAAAGAAATGGTTGCAATGTGCCTGGTGAAAGATCAAACCAAGAGACCAACAGCTGAGAAACTTTTAAAGCACTCTTTTTTCAAGAATGCTAAGCCTCCAGAGCTTTCTTTGAAGAAATTATTTGCTAACTTGCCTCCTCTTTCACATCGTGTAAAGGATCTGCAGCTTAAAGATGCTGCCCAGCTAGCCTTAAAGAAAATGCCTTCAGCGGAGCAAGAAGCATTATCACAGAGTGAGTACCAGCGAGGAGTTAGTGCATGGAACTTTGATGTCGAGGATTTGAAAGCCCAAGCTTCCTTGGTGAATGATGATATGGCAGAGATGAAGGAAGAGGAGGAGAATATAAATTATTGTAATGCTAAGGATGTCTTTTTTCCTCAATCTAGTCTGAGGAATTTCAGTTCATGTAATGAATCATCTCAGGATGAGCATGGAGTAGGGGCAAGTGGTCAGGGTTTGCCACAAGTGGACTGTTTGAGCAAAAAGGGTAATTTTATGGAAAGCGATATGGTAAAAGCTGAGTCCCAAGAAAAAACTGGATGGAAGAGAAATGGAACTGGCACTGAAGTAGAAGCATCTACCTCTGGCCAAGAGATTGTACAAGGCAAGATCAAAACCCAAATGCCAAAAGGTCGTCAAACACAAAGTGGTCCACTTCTACCTGGTACTGTACTGAGTCATTCTTTATCAGAAAGAGTGCGAGGCTCTGAGAGGTTTGATTCTGAAATTCAACCATGTACTGAAAAAACCCGTCGAGAAGCAAGGCAAGCTCCAAGCTTCAGTGGTCCACTAATGCTGCCAAATCGCGCCTCAGCAAACAGCCTATCAGCTCCCATAAAACCTTCTGGAGGGTATAGAGATTCAATGGATGACAAATCGAAAGCTAATCTTGTGCAAATTAAGGGGCGTTTTTCAGTGACGTCAGAGAGCCTAGATCTCGTAAAGGATATTCCATTGAGCACGGTTTCACGACGGCCTTCACAGAACTCACCTCTACGAAAGTCAGCTAGTGTCGGTGATTGGATATTTGATTCCAAGCAGTCTGTCAGCCAACCCCCTAAGGAGGCTTCCAACATCAACGGGCCTACATCATTTCTTATGCCTCATCTTCAGAATCTTTTCCATCAAACCTCAATTCAACAGGATCTTATAGTGAACTTGTTGAATAGCTTACAAACATCAGACATGATCGATGCTACTCAAAATGGGAAGTTGCCTCCATTGCCTCGGAGCTCGGAGAATAATGGAAGTGTTGAAACAGCAGCAGTTGAGAGAGAGCGTTCGCTGCTGCGGAAGGTCTCCGAACTTCAAGCCAGAATGACGCATTTGACTTACGAATTGACTGCTGAAAAGTTAAAATACATTCAATTACAAGAGCAGTTCAACTCAGCATCTAGTCAAGAAGAAAACGAGATCAAGAGGGAAGAGAACGTCTGA 1992 43.12 MSLIDHPNLVRAYCSFVVERNLWVVMPFMAEGSCLHLMKTSYSDGFEEVAICSILKETLKALEYLHRQGHIHRDVKAGNILLDSNGSVKLADFGVSACMFDTGDRRRSRNTFVGTPCWMAPEVLQPGTGYNFKADIWSFGITALELAHGHAPFSKYPPMKVLLMTIQNAPPGLDYDRDKKFSKSFKEMVAMCLVKDQTKRPTAEKLLKHSFFKNAKPPELSLKKLFANLPPLSHRVKDLQLKDAAQLALKKMPSAEQEALSQSEYQRGVSAWNFDVEDLKAQASLVNDDMAEMKEEEENINYCNAKDVFFPQSSLRNFSSCNESSQDEHGVGASGQGLPQVDCLSKKGNFMESDMVKAESQEKTGWKRNGTGTEVEASTSGQEIVQGKIKTQMPKGRQTQSGPLLPGTVLSHSLSERVRGSERFDSEIQPCTEKTRREARQAPSFSGPLMLPNRASANSLSAPIKPSGGYRDSMDDKSKANLVQIKGRFSVTSESLDLVKDIPLSTVSRRPSQNSPLRKSASVGDWIFDSKQSVSQPPKEASNINGPTSFLMPHLQNLFHQTSIQQDLIVNLLNSLQTSDMIDATQNGKLPPLPRSSENNGSVETAAVERERSLLRKVSELQARMTHLTYELTAEKLKYIQLQEQFNSASSQEENEIKREENV 663
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 8510267 8525235 - Sed0026622.3 Sed04g0926 709529
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed04g0926 663 SUPERFAMILY Protein kinase-like (PK-like) 1 267 IPR011009 -
Sed04g0926 663 MobiDBLite consensus disorder prediction 355 382 - -
Sed04g0926 663 Gene3D Phosphorylase Kinase; domain 1 1 30 - -
Sed04g0926 663 MobiDBLite consensus disorder prediction 365 382 - -
Sed04g0926 663 PANTHER SERINE/THREONINE-PROTEIN KINASE FRAY2 1 642 IPR047173 GO:0043539(InterPro)
Sed04g0926 663 FunFam serine/threonine-protein kinase BLUS1-like isoform X2 32 262 - -
Sed04g0926 663 SMART serkin_6 1 212 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed04g0926 663 ProSiteProfiles Protein kinase domain profile. 1 212 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed04g0926 663 MobiDBLite consensus disorder prediction 432 475 - -
Sed04g0926 663 Gene3D Transferase(Phosphotransferase) domain 1 32 263 - -
Sed04g0926 663 MobiDBLite consensus disorder prediction 586 606 - -
Sed04g0926 663 Coils Coil 276 296 - -
Sed04g0926 663 Pfam Protein kinase domain 3 212 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed04g0924 Sed-Chr4:8510267 Sed04g0926 Sed-Chr4:8510267 0.00E+00 dispersed
Sed04g0926 Sed-Chr4:8510267 Sed05g1387 Sed-Chr5:26901591 2.20E-124 dispersed
Sed04g0925 Sed-Chr4:8510267 Sed04g0926 Sed-Chr4:8510267 0.00E+00 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
78972 PF00069 Pkinase 2.30E-48 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed04g0926 - - - 0.0