Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed04g0951 ATGGCTTCCATTTCTACTCCTCTTCTTCTTCTCTACTTCTTCTTCCATTTCCATTTCTTCTCAGGTGTAAATTCAGCAACTTTCACCATTTTAAACCAGTGTGGTTACACAGTTTGGCCTGGAGTTTTATCCGGCGCCGGCACATCACAGCTCTCCACCACCGGTCCAGGGGAGTCCAATGCTCTCGCCATGCCCCCGTCATGGTCCGGCCGCATTTGGGGCCGAACATACTGCGCCCCAGATGCTGCAGGCAGATTCTCTTGTGACACGGCCGACTGTGGAACCGGCACCATTGAATGCAATGGTGCCGGTGCTACCCCGCCTGCTACTCTCGCCGAGTTCACGCTCAATGGTGCGGGCGGGCTCGATTTTTATGATGTCAGTCTTGTAGATGGTTATAATGTGGCTATGCTAATCACCCCACAGGGTGGAACAGGGGAGGGAAACTGCACAACGATTGGATGTGCAGCGGATTTGAACACCAAATGCCCAACGGAGCTTAGAGTGGTGTCGAGCGGGAAGAATGTAGCGTGTAAGAGTGCGTGTGGGGCGTTCGGGGAGGCCCGATATTGCTGCAGCGGGGAATATGGGAGCCCGAACACTTGCCACCCAACATCATACTCGGAGTTGTTCAAGAGGGCATGCCCGCAGGCGTATAGCTATGCTTATGATGATGGAAGCAGCACCTTCACTTGTGCTTCCCCCAATTACCTCATCACTTTCTGTCCTACTCTTTCAACTAGTGTGAAATCATCAAACGGGCAGTACCCGCGGGCAGTGGACGTCTCGAGAGGCCAGCAAACGGGCAGCCCGTTAACGTCAGTAATCGTTATCTCCACCGTCACGGCAGCTCTAAGTCCGCAATTTTCCCGGCTCTTTTGA 882 53.51 MASISTPLLLLYFFFHFHFFSGVNSATFTILNQCGYTVWPGVLSGAGTSQLSTTGPGESNALAMPPSWSGRIWGRTYCAPDAAGRFSCDTADCGTGTIECNGAGATPPATLAEFTLNGAGGLDFYDVSLVDGYNVAMLITPQGGTGEGNCTTIGCAADLNTKCPTELRVVSSGKNVACKSACGAFGEARYCCSGEYGSPNTCHPTSYSELFKRACPQAYSYAYDDGSSTFTCASPNYLITFCPTLSTSVKSSNGQYPRAVDVSRGQQTGSPLTSVIVISTVTAALSPQFSRLF 293
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 10991306 10997671 + Sed0013211.1 Sed04g0951 709554
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed04g0951 293 Gene3D Thaumatin 26 243 IPR037176 -
Sed04g0951 293 ProSiteProfiles Thaumatin family profile. 25 243 IPR001938 -
Sed04g0951 293 Pfam Thaumatin family 32 243 IPR001938 -
Sed04g0951 293 PANTHER OS03G0233200 PROTEIN 12 243 IPR001938 GO:0005576(PANTHER)|GO:0006952(PANTHER)
Sed04g0951 293 SUPERFAMILY Osmotin, thaumatin-like protein 26 243 IPR037176 -
Sed04g0951 293 PIRSF PR5 1 287 IPR001938 -
Sed04g0951 293 PRINTS Pathogenesis-related protein signature 233 242 IPR001938 -
Sed04g0951 293 PRINTS Pathogenesis-related protein signature 27 39 IPR001938 -
Sed04g0951 293 PRINTS Pathogenesis-related protein signature 71 82 IPR001938 -
Sed04g0951 293 PRINTS Pathogenesis-related protein signature 123 139 IPR001938 -
Sed04g0951 293 SMART tha2 28 243 IPR001938 -
Sed04g0951 293 ProSitePatterns Thaumatin family signature. 84 100 IPR017949 -
Sed04g0951 293 FunFam THAUMATIN-LIKE PROTEIN 1 26 243 - -
Sed04g0951 293 CDD TLP-PA 27 242 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed02g0605 Sed-Chr2:43773608 Sed04g0951 Sed-Chr4:10991306 4.80E-69 dispersed
Sed04g0951 Sed-Chr4:10991306 Sed13g1561 Sed-Chr13:20815333 6.90E-86 dispersed
Sed04g0951 Sed-Chr4:10991306 Sed04g0953 Sed-Chr4:11071522 2.60E-77 proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed04g0951 - - - 0.0