Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed04g0960 ATGTCTACTCCTTTGAGGAAGGTGTTTTGTAGAATTTCAGGCCTTGCAACTTCTTTGAGAAGAAGCACTGTCCCTCACAGTAGAAGAATCTTTCACAGAGATGTTGAACAACAGGAGTTTCCATATGCAAACTCTCATTGCCTCTCTTCTTACTACAGTGTCTTTGTTGCTCGCCTTGCCATTATGGTGATGCTAGCTATTTTGATTGGGCTGCTGACAATTCTCACTTGGCATTTCACAAAGAGCTACACAGCACAGTCACTGAATAGCTTAGCTTATGGTCTTCGCCATGAACTGTTGCAGCGCCCGATCTTACGGATGTGGGGTGTCTTGAATTCCACTGCTGAAATAACCACAGCTCAGGTTAAGCTTTCAGAATATGTAATGAGGAAGTACAGCAAGCCTGCTAATCAAGCAGAGCAAGTTGAGTTGTATGAATCAATGAGGGACGTTACATGGGCGATGTTTGCGAGTCGAAAAGCTCTTAATGCCATAACCATCAATTACAAGAATGGCTTTGTTCAGGCATTCCATCGAGATCATAGAAGCAACAACACGTTTTATATTTACTCTGATCTCACAAACTATTCCATTAGTGCCACTGAATCGTATAATATCAATCGCCTTTCGTCGGGTGAAGGGTGGTCGGATCCACCCATACATGGAAATGTTTCTGCAAAGTGGTACAGGGAACCACTCGATCCCATTAGCGGCGAGAAGATCGGGAAAGCAAGGGAAATCCCACCGGAAGATTTGATTAATATTGCTGGGATTTCACAGGTAGCAGATGGTGTTGCCTCATGGCATGTCACTGTGAGCAAGTACATGGATACACCATTGCTTTCAGCCGCTCTGCCTGTTTCTGATGCTTCGAACGAAAGCATAGTTGCAGTCGTGGGTGTGACGACCGCACTTTCTAGCGTAGGTCAACTAATGAAGGAGCTTGTTGAGTTCCATAGTGGACATATTTATCTCACCTCTCAAGAGGGCTACTTGCTTGCTACTTCAGCCAATGCTCCCCTGTTAAGAAATACATCAAGGGGTCCAAAGCTTATGATGGCTGTCGATTCCCAGGACGACGTGATTCGGTCAGGAGCAGAGTGGTTACAGAAAACTTATGGAAACAATTTTCCCCCTGGTCATGAGGTCCATGAAGAGAATGTCAAGCTTGGTGATCAGCAATTTTACATCGACTCGTTTTTTCTTAATCTAAAGAGGCTTCCTATTGTGGGGGTTGTCATCATTCCTAGACAATACATAATGGGAAAGGTAGATGAGAGAGCTTTCAAGACATTGATTATACTGATTTCTGCATCCTTGTGCATCTTAGTTATTGGATGTCTATGCATTATGATTCTGACAAAAGGAGTATCCAAGGAAATGAAACTAAGAGCAGAACTGATAAGCCATCTTGATGCAAGAAGAAGGGCAGAGGCATCTAGTAATTACAAGAGTCAATTTCTAGCGAATATGAGTCATGAGCTAAGGACGCCAATGGCTGCAGTAATTGGATTGCTGGACATTCTAATGTGTGATGATTGTCTTAATAATGAACAATTTTCAACGGTTACTCAAATTCGAAACAGCTCAACATCTTTACTTCGACTTCTCAACAACATTCTAGATCTAAGCAAGGTTGAATCTGGAAAGCTGGTTTTGGAAGATGCAGAGTTTGACCTCGGACGAGATCTCGAAGGGCTTGTTGATATGTTTTCTGTGCAGTGCATCAACCATAATGTGGAGACTGTATTGGATCTCTCTGATGATATGCCGAAATTAGTTCGAGGAGACTCGGGTCGAGTTGTTCAAATATTCACAAATTTGATTAGCAATTCTATCAAATTCACAACTACTGGTCACATCATTCTTCGAGGGTGGTGTGAGACATCAAATGCTCTCAACGAAGTGGGAAAGTTTTGTAATGATCAGAAGAAAATACGATATCCGAATCGAATAAAGATGAAACAGCGGGACCCCACAAAGAATGCCTGCAAGAAAGAAAACAAAATGACCTTGTGGTTTGAACTTGATGACACTGGATGTGGAATTGATCCAAGCAAATGGGAGTCAGTTTTTGAAAGCTTCGAGCAGGCAGATCCCTCGACAACACGAACGCATGGTGGCACCGGTCTTGGACTATGCATCGTACGTACCTTGGTTAACAAGATGGGTGGAGAAATCAAGGTTGTAAAGAAGAACGGCCCGGGAACATTGATGAGATTTTATTTGGTTCTCAGTACGCCTGTAGATTCAACGGATCATCAATGTCAGCTTGATTTCGCACAACACAACGCAGTGGTACTACTTGCACTCCGTGGCAGCATGAGTCGGTTAATCACGTCGCAGTGGCTTCGTAAAATCGGACTGCTCACTTTAGAAGCTTCAGAGTGGAATGAACTGACACTAATCCTTCAGGAACTCTTTCAAGCCAGAAGCTCTGAAACTAAAAAGGGATATAATCCACAGGATTCACTTGGAGAACCATTACGAGCAGAGCTAATGAGAATAAAAGATATGAAAAGCCAAGTATTCATTATCGTTGCTGACATCGGGATACTCGACTTAAGCACTGATATTTGGAAGGACCAACTTTACTTCCTTGACAAGTACTCTGGAAAAGCAAAATTTGCCTGGATGTTGAACCACGATACGTCCAACGCCATTAAGATGGAGCTTCGGGGAAAAGGACACATTATAATGAACAACAAGCCACTGTACAAAGCAAAAATGATTCATATTCTAGAAGCTGTTATGAAGGAAAGAAATCTTGAGTTGCAGAGGAAAAATGCTTTAAGAACTGCATCAAAGGATGGGGATTATCATGAATGTCTTGAGATTGATTCCACTCAGTTTGATACTGCCAGCTCTGATGATTCTGATATATTTGAACTGGGTAATTCTAATTCTCAAAGTACAACATTTCAAGGGAAAGATGATCAAGAAGAAAAGTTAACAAAACCATCACAGTCACCAGTTCTGCCCATTAACAATAGCTTAGTTGAGTTAACTCATGCACATTCAAGCGATATACGGACTGGCGACTCGAGTGGCGCAAGGCCGAACTCATCAAAGCCTCAATGGAAAAGTTCTGAACCCAATGGACAGAACTTCGGATGCAACTATCCTACAAACCGAGGAGAATTGCATTCTAAGAATGTTCATGGTAAAAAGTCTCTCGAAGGGCTACGCATTTTGCTTGCAGAAGATACACCGGTTCTTCAAAAAGTAACGACGATAATGCTCGAAAAGATGGGAGCGATGGTCATCGCTGTCGGAGATGGACTGCTGGCTGTAGAAGCTCTAGCTGCTATGCTTAGTGCTGAAGAGCAAAGAAGGGAATGCCCCACAAGATATGACTTGGTATTAATGGATTGCCAAATGCCGAGGATGGATGGCTACGAAGCAACAAAAGCAATAAGGAATCTAGAAGTTGGATCGAGTCTTCACATTCCGATAGTAGCGTTGACTGCACACGCAATGTCGTCCGATGAAGCCAAATGCTTGGAGGTGGGAATGGATGCATATCTAACAAAGCCAATTGACTATAAGCTGATGGTATCCACCATACTTTCCCTCACTCAAACAAGAGGCTAA 3594 42.68 MSTPLRKVFCRISGLATSLRRSTVPHSRRIFHRDVEQQEFPYANSHCLSSYYSVFVARLAIMVMLAILIGLLTILTWHFTKSYTAQSLNSLAYGLRHELLQRPILRMWGVLNSTAEITTAQVKLSEYVMRKYSKPANQAEQVELYESMRDVTWAMFASRKALNAITINYKNGFVQAFHRDHRSNNTFYIYSDLTNYSISATESYNINRLSSGEGWSDPPIHGNVSAKWYREPLDPISGEKIGKAREIPPEDLINIAGISQVADGVASWHVTVSKYMDTPLLSAALPVSDASNESIVAVVGVTTALSSVGQLMKELVEFHSGHIYLTSQEGYLLATSANAPLLRNTSRGPKLMMAVDSQDDVIRSGAEWLQKTYGNNFPPGHEVHEENVKLGDQQFYIDSFFLNLKRLPIVGVVIIPRQYIMGKVDERAFKTLIILISASLCILVIGCLCIMILTKGVSKEMKLRAELISHLDARRRAEASSNYKSQFLANMSHELRTPMAAVIGLLDILMCDDCLNNEQFSTVTQIRNSSTSLLRLLNNILDLSKVESGKLVLEDAEFDLGRDLEGLVDMFSVQCINHNVETVLDLSDDMPKLVRGDSGRVVQIFTNLISNSIKFTTTGHIILRGWCETSNALNEVGKFCNDQKKIRYPNRIKMKQRDPTKNACKKENKMTLWFELDDTGCGIDPSKWESVFESFEQADPSTTRTHGGTGLGLCIVRTLVNKMGGEIKVVKKNGPGTLMRFYLVLSTPVDSTDHQCQLDFAQHNAVVLLALRGSMSRLITSQWLRKIGLLTLEASEWNELTLILQELFQARSSETKKGYNPQDSLGEPLRAELMRIKDMKSQVFIIVADIGILDLSTDIWKDQLYFLDKYSGKAKFAWMLNHDTSNAIKMELRGKGHIIMNNKPLYKAKMIHILEAVMKERNLELQRKNALRTASKDGDYHECLEIDSTQFDTASSDDSDIFELGNSNSQSTTFQGKDDQEEKLTKPSQSPVLPINNSLVELTHAHSSDIRTGDSSGARPNSSKPQWKSSEPNGQNFGCNYPTNRGELHSKNVHGKKSLEGLRILLAEDTPVLQKVTTIMLEKMGAMVIAVGDGLLAVEALAAMLSAEEQRRECPTRYDLVLMDCQMPRMDGYEATKAIRNLEVGSSLHIPIVALTAHAMSSDEAKCLEVGMDAYLTKPIDYKLMVSTILSLTQTRG 1197
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 11138346 11145632 + Sed0009374.2 Sed04g0960 709563
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed04g0960 1197 CDD HisKA 484 545 IPR003661 GO:0000155(InterPro)|GO:0007165(InterPro)
Sed04g0960 1197 Pfam Response regulator receiver domain 1064 1188 IPR001789 GO:0000160(InterPro)
Sed04g0960 1197 Gene3D - 1043 1194 - -
Sed04g0960 1197 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 596 744 IPR003594 -
Sed04g0960 1197 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 538 743 IPR036890 -
Sed04g0960 1197 SUPERFAMILY CheY-like 1060 1194 IPR011006 -
Sed04g0960 1197 SMART HKATPase_4 596 747 IPR003594 -
Sed04g0960 1197 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 471 550 IPR036097 GO:0000155(InterPro)|GO:0007165(InterPro)
Sed04g0960 1197 Pfam His Kinase A (phospho-acceptor) domain 484 549 IPR003661 GO:0000155(InterPro)|GO:0007165(InterPro)
Sed04g0960 1197 ProSiteProfiles Response regulatory domain profile. 1063 1193 IPR001789 GO:0000160(InterPro)
Sed04g0960 1197 MobiDBLite consensus disorder prediction 1006 1045 - -
Sed04g0960 1197 SMART HisKA_10 483 549 IPR003661 GO:0000155(InterPro)|GO:0007165(InterPro)
Sed04g0960 1197 MobiDBLite consensus disorder prediction 966 993 - -
Sed04g0960 1197 CDD REC_hyHK_CKI1_RcsC-like 1064 1189 - -
Sed04g0960 1197 Gene3D - 548 748 IPR036890 -
Sed04g0960 1197 PANTHER TWO-COMPONENT HISTIDINE KINASE 57 756 IPR050736 -
Sed04g0960 1197 FunFam Histidine kinase 1-like protein 471 550 - -
Sed04g0960 1197 PRINTS Bacterial sensor protein C-terminal signature 690 700 IPR004358 GO:0016310(InterPro)|GO:0016772(InterPro)
Sed04g0960 1197 PRINTS Bacterial sensor protein C-terminal signature 672 686 IPR004358 GO:0016310(InterPro)|GO:0016772(InterPro)
Sed04g0960 1197 PRINTS Bacterial sensor protein C-terminal signature 707 725 IPR004358 GO:0016310(InterPro)|GO:0016772(InterPro)
Sed04g0960 1197 ProSiteProfiles Histidine kinase domain profile. 490 747 IPR005467 -
Sed04g0960 1197 Gene3D - 451 547 - -
Sed04g0960 1197 SMART REC_2 1062 1189 IPR001789 GO:0000160(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed03g1967 Sed-Chr3:13684537 Sed04g0960 Sed-Chr4:11138346 3.00E-68 dispersed
Sed04g0960 Sed-Chr4:11138346 Sed05g2083 Sed-Chr5:34029170 3.60E-40 dispersed
Sed04g0960 Sed-Chr4:11138346 Sed04g0961 Sed-Chr4:11139303 0.00E+00 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
38085 PF02518 HATPase_c 1.20E-23 CL0025 Sed TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed04g0960 - - - 0.0