Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed04g0960 ATGTCTACTCCTTTGAGGAAGGTGTTTTGTAGAATTTCAGGCCTTGCAACTTCTTTGAGAAGAAGCACTGTCCCTCACAGTAGAAGAATCTTTCACAGAGATGTTGAACAACAGGAGTTTCCATATGCAAACTCTCATTGCCTCTCTTCTTACTACAGTGTCTTTGTTGCTCGCCTTGCCATTATGGTGATGCTAGCTATTTTGATTGGGCTGCTGACAATTCTCACTTGGCATTTCACAAAGAGCTACACAGCACAGTCACTGAATAGCTTAGCTTATGGTCTTCGCCATGAACTGTTGCAGCGCCCGATCTTACGGATGTGGGGTGTCTTGAATTCCACTGCTGAAATAACCACAGCTCAGGTTAAGCTTTCAGAATATGTAATGAGGAAGTACAGCAAGCCTGCTAATCAAGCAGAGCAAGTTGAGTTGTATGAATCAATGAGGGACGTTACATGGGCGATGTTTGCGAGTCGAAAAGCTCTTAATGCCATAACCATCAATTACAAGAATGGCTTTGTTCAGGCATTCCATCGAGATCATAGAAGCAACAACACGTTTTATATTTACTCTGATCTCACAAACTATTCCATTAGTGCCACTGAATCGTATAATATCAATCGCCTTTCGTCGGGTGAAGGGTGGTCGGATCCACCCATACATGGAAATGTTTCTGCAAAGTGGTACAGGGAACCACTCGATCCCATTAGCGGCGAGAAGATCGGGAAAGCAAGGGAAATCCCACCGGAAGATTTGATTAATATTGCTGGGATTTCACAGGTAGCAGATGGTGTTGCCTCATGGCATGTCACTGTGAGCAAGTACATGGATACACCATTGCTTTCAGCCGCTCTGCCTGTTTCTGATGCTTCGAACGAAAGCATAGTTGCAGTCGTGGGTGTGACGACCGCACTTTCTAGCGTAGGTCAACTAATGAAGGAGCTTGTTGAGTTCCATAGTGGACATATTTATCTCACCTCTCAAGAGGGCTACTTGCTTGCTACTTCAGCCAATGCTCCCCTGTTAAGAAATACATCAAGGGGTCCAAAGCTTATGATGGCTGTCGATTCCCAGGACGACGTGATTCGGTCAGGAGCAGAGTGGTTACAGAAAACTTATGGAAACAATTTTCCCCCTGGTCATGAGGTCCATGAAGAGAATGTCAAGCTTGGTGATCAGCAATTTTACATCGACTCGTTTTTTCTTAATCTAAAGAGGCTTCCTATTGTGGGGGTTGTCATCATTCCTAGACAATACATAATGGGAAAGGTAGATGAGAGAGCTTTCAAGACATTGATTATACTGATTTCTGCATCCTTGTGCATCTTAGTTATTGGATGTCTATGCATTATGATTCTGACAAAAGGAGTATCCAAGGAAATGAAACTAAGAGCAGAACTGATAAGCCATCTTGATGCAAGAAGAAGGGCAGAGGCATCTAGTAATTACAAGAGTCAATTTCTAGCGAATATGAGTCATGAGCTAAGGACGCCAATGGCTGCAGTAATTGGATTGCTGGACATTCTAATGTGTGATGATTGTCTTAATAATGAACAATTTTCAACGGTTACTCAAATTCGAAACAGCTCAACATCTTTACTTCGACTTCTCAACAACATTCTAGATCTAAGCAAGGTTGAATCTGGAAAGCTGGTTTTGGAAGATGCAGAGTTTGACCTCGGACGAGATCTCGAAGGGCTTGTTGATATGTTTTCTGTGCAGTGCATCAACCATAATGTGGAGACTGTATTGGATCTCTCTGATGATATGCCGAAATTAGTTCGAGGAGACTCGGGTCGAGTTGTTCAAATATTCACAAATTTGATTAGCAATTCTATCAAATTCACAACTACTGGTCACATCATTCTTCGAGGGTGGTGTGAGACATCAAATGCTCTCAACGAAGTGGGAAAGTTTTGTAATGATCAGAAGAAAATACGATATCCGAATCGAATAAAGATGAAACAGCGGGACCCCACAAAGAATGCCTGCAAGAAAGAAAACAAAATGACCTTGTGGTTTGAACTTGATGACACTGGATGTGGAATTGATCCAAGCAAATGGGAGTCAGTTTTTGAAAGCTTCGAGCAGGCAGATCCCTCGACAACACGAACGCATGGTGGCACCGGTCTTGGACTATGCATCGTACGTACCTTGGTTAACAAGATGGGTGGAGAAATCAAGGTTGTAAAGAAGAACGGCCCGGGAACATTGATGAGATTTTATTTGGTTCTCAGTACGCCTGTAGATTCAACGGATCATCAATGTCAGCTTGATTTCGCACAACACAACGCAGTGGTACTACTTGCACTCCGTGGCAGCATGAGTCGGTTAATCACGTCGCAGTGGCTTCGTAAAATCGGACTGCTCACTTTAGAAGCTTCAGAGTGGAATGAACTGACACTAATCCTTCAGGAACTCTTTCAAGCCAGAAGCTCTGAAACTAAAAAGGGATATAATCCACAGGATTCACTTGGAGAACCATTACGAGCAGAGCTAATGAGAATAAAAGATATGAAAAGCCAAGTATTCATTATCGTTGCTGACATCGGGATACTCGACTTAAGCACTGATATTTGGAAGGACCAACTTTACTTCCTTGACAAGTACTCTGGAAAAGCAAAATTTGCCTGGATGTTGAACCACGATACGTCCAACGCCATTAAGATGGAGCTTCGGGGAAAAGGACACATTATAATGAACAACAAGCCACTGTACAAAGCAAAAATGATTCATATTCTAGAAGCTGTTATGAAGGAAAGAAATCTTGAGTTGCAGAGGAAAAATGCTTTAAGAACTGCATCAAAGGATGGGGATTATCATGAATGTCTTGAGATTGATTCCACTCAGTTTGATACTGCCAGCTCTGATGATTCTGATATATTTGAACTGGGTAATTCTAATTCTCAAAGTACAACATTTCAAGGGAAAGATGATCAAGAAGAAAAGTTAACAAAACCATCACAGTCACCAGTTCTGCCCATTAACAATAGCTTAGTTGAGTTAACTCATGCACATTCAAGCGATATACGGACTGGCGACTCGAGTGGCGCAAGGCCGAACTCATCAAAGCCTCAATGGAAAAGTTCTGAACCCAATGGACAGAACTTCGGATGCAACTATCCTACAAACCGAGGAGAATTGCATTCTAAGAATGTTCATGGTAAAAAGTCTCTCGAAGGGCTACGCATTTTGCTTGCAGAAGATACACCGGTTCTTCAAAAAGTAACGACGATAATGCTCGAAAAGATGGGAGCGATGGTCATCGCTGTCGGAGATGGACTGCTGGCTGTAGAAGCTCTAGCTGCTATGCTTAGTGCTGAAGAGCAAAGAAGGGAATGCCCCACAAGATATGACTTGGTATTAATGGATTGCCAAATGCCGAGGATGGATGGCTACGAAGCAACAAAAGCAATAAGGAATCTAGAAGTTGGATCGAGTCTTCACATTCCGATAGTAGCGTTGACTGCACACGCAATGTCGTCCGATGAAGCCAAATGCTTGGAGGTGGGAATGGATGCATATCTAACAAAGCCAATTGACTATAAGCTGATGGTATCCACCATACTTTCCCTCACTCAAACAAGAGGCTAA 3594 42.68 MSTPLRKVFCRISGLATSLRRSTVPHSRRIFHRDVEQQEFPYANSHCLSSYYSVFVARLAIMVMLAILIGLLTILTWHFTKSYTAQSLNSLAYGLRHELLQRPILRMWGVLNSTAEITTAQVKLSEYVMRKYSKPANQAEQVELYESMRDVTWAMFASRKALNAITINYKNGFVQAFHRDHRSNNTFYIYSDLTNYSISATESYNINRLSSGEGWSDPPIHGNVSAKWYREPLDPISGEKIGKAREIPPEDLINIAGISQVADGVASWHVTVSKYMDTPLLSAALPVSDASNESIVAVVGVTTALSSVGQLMKELVEFHSGHIYLTSQEGYLLATSANAPLLRNTSRGPKLMMAVDSQDDVIRSGAEWLQKTYGNNFPPGHEVHEENVKLGDQQFYIDSFFLNLKRLPIVGVVIIPRQYIMGKVDERAFKTLIILISASLCILVIGCLCIMILTKGVSKEMKLRAELISHLDARRRAEASSNYKSQFLANMSHELRTPMAAVIGLLDILMCDDCLNNEQFSTVTQIRNSSTSLLRLLNNILDLSKVESGKLVLEDAEFDLGRDLEGLVDMFSVQCINHNVETVLDLSDDMPKLVRGDSGRVVQIFTNLISNSIKFTTTGHIILRGWCETSNALNEVGKFCNDQKKIRYPNRIKMKQRDPTKNACKKENKMTLWFELDDTGCGIDPSKWESVFESFEQADPSTTRTHGGTGLGLCIVRTLVNKMGGEIKVVKKNGPGTLMRFYLVLSTPVDSTDHQCQLDFAQHNAVVLLALRGSMSRLITSQWLRKIGLLTLEASEWNELTLILQELFQARSSETKKGYNPQDSLGEPLRAELMRIKDMKSQVFIIVADIGILDLSTDIWKDQLYFLDKYSGKAKFAWMLNHDTSNAIKMELRGKGHIIMNNKPLYKAKMIHILEAVMKERNLELQRKNALRTASKDGDYHECLEIDSTQFDTASSDDSDIFELGNSNSQSTTFQGKDDQEEKLTKPSQSPVLPINNSLVELTHAHSSDIRTGDSSGARPNSSKPQWKSSEPNGQNFGCNYPTNRGELHSKNVHGKKSLEGLRILLAEDTPVLQKVTTIMLEKMGAMVIAVGDGLLAVEALAAMLSAEEQRRECPTRYDLVLMDCQMPRMDGYEATKAIRNLEVGSSLHIPIVALTAHAMSSDEAKCLEVGMDAYLTKPIDYKLMVSTILSLTQTRG 1197
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 11138346 11145632 + Sed0009374.2 Sed04g0960 709563

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed04g0960 1197 CDD HisKA 484 545 IPR003661 GO:0000155(InterPro)|GO:0007165(InterPro)
Sed04g0960 1197 Pfam Response regulator receiver domain 1064 1188 IPR001789 GO:0000160(InterPro)
Sed04g0960 1197 Gene3D - 1043 1194 - -
Sed04g0960 1197 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 596 744 IPR003594 -
Sed04g0960 1197 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 538 743 IPR036890 -
Sed04g0960 1197 SUPERFAMILY CheY-like 1060 1194 IPR011006 -
Sed04g0960 1197 SMART HKATPase_4 596 747 IPR003594 -
Sed04g0960 1197 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 471 550 IPR036097 GO:0000155(InterPro)|GO:0007165(InterPro)
Sed04g0960 1197 Pfam His Kinase A (phospho-acceptor) domain 484 549 IPR003661 GO:0000155(InterPro)|GO:0007165(InterPro)
Sed04g0960 1197 ProSiteProfiles Response regulatory domain profile. 1063 1193 IPR001789 GO:0000160(InterPro)
Sed04g0960 1197 MobiDBLite consensus disorder prediction 1006 1045 - -
Sed04g0960 1197 SMART HisKA_10 483 549 IPR003661 GO:0000155(InterPro)|GO:0007165(InterPro)
Sed04g0960 1197 MobiDBLite consensus disorder prediction 966 993 - -
Sed04g0960 1197 CDD REC_hyHK_CKI1_RcsC-like 1064 1189 - -
Sed04g0960 1197 Gene3D - 548 748 IPR036890 -
Sed04g0960 1197 PANTHER TWO-COMPONENT HISTIDINE KINASE 57 756 IPR050736 -
Sed04g0960 1197 FunFam Histidine kinase 1-like protein 471 550 - -
Sed04g0960 1197 PRINTS Bacterial sensor protein C-terminal signature 690 700 IPR004358 GO:0016310(InterPro)|GO:0016772(InterPro)
Sed04g0960 1197 PRINTS Bacterial sensor protein C-terminal signature 672 686 IPR004358 GO:0016310(InterPro)|GO:0016772(InterPro)
Sed04g0960 1197 PRINTS Bacterial sensor protein C-terminal signature 707 725 IPR004358 GO:0016310(InterPro)|GO:0016772(InterPro)
Sed04g0960 1197 ProSiteProfiles Histidine kinase domain profile. 490 747 IPR005467 -
Sed04g0960 1197 Gene3D - 451 547 - -
Sed04g0960 1197 SMART REC_2 1062 1189 IPR001789 GO:0000160(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed04g0960 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed03g1967 Sed-Chr3:13684537 Sed04g0960 Sed-Chr4:11138346 3.00E-68 dispersed
Sed04g0960 Sed-Chr4:11138346 Sed05g2083 Sed-Chr5:34029170 3.60E-40 dispersed
Sed04g0960 Sed-Chr4:11138346 Sed04g0961 Sed-Chr4:11139303 0.00E+00 tandem
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Sed04g0961 . 16 1220 Histidine Kinase Gene Family AT2G17820 64.3 0.0e+00 1455.7
Sed04g0960 . 5 1194 Histidine Kinase Gene Family AT2G17820 65.0 0.0e+00 1454.9
Sed03g1085 . 23 986 Histidine Kinase Gene Family AT2G01830 71.8 0.0e+00 1320.4
Sed06g0270 . 36 1011 Histidine Kinase Gene Family AT2G01830 70.3 0.0e+00 1312.4
Sed06g0268 . 36 989 Histidine Kinase Gene Family AT2G01830 68.6 0.0e+00 1270.8
Sed06g0269 . 36 989 Histidine Kinase Gene Family AT2G01830 68.6 0.0e+00 1270.8
Sed07g0081 . 58 1000 Histidine Kinase Gene Family AT2G01830 52.6 1.0e-272 937.6
Sed07g0082 . 58 1000 Histidine Kinase Gene Family AT2G01830 52.6 1.0e-272 937.6
Sed05g2083 . 256 1206 Histidine Kinase Gene Family AT2G01830 53.3 8.6e-272 934.5
Sed05g2084 . 256 1206 Histidine Kinase Gene Family AT2G01830 53.3 8.6e-272 934.5
Sed09g0384 . 72 1026 Histidine Kinase Gene Family AT2G01830 52.3 4.0e-269 925.6
Sed09g0383 . 72 1026 Histidine Kinase Gene Family AT2G01830 52.3 4.0e-269 925.6
Sed05g0964 . 302 1249 Histidine Kinase Gene Family AT2G01830 51.5 2.7e-265 912.9
Sed01g0554 . 276 1231 Histidine Kinase Gene Family AT2G01830 51.3 1.0e-264 911.0
Sed01g0555 . 276 1231 Histidine Kinase Gene Family AT2G01830 51.3 1.0e-264 911.0
Sed01g0556 . 276 1231 Histidine Kinase Gene Family AT2G01830 51.3 1.0e-264 911.0
Sed01g0557 . 276 1231 Histidine Kinase Gene Family AT2G01830 51.3 1.0e-264 911.0
Sed13g1937 . 1 987 Histidine Kinase Gene Family AT5G10720 58.4 5.3e-294 1008.1
Sed13g1938 . 1 987 Histidine Kinase Gene Family AT5G10720 58.4 5.3e-294 1008.1
Sed05g1812 . 1 986 Histidine Kinase Gene Family AT5G10720 57.1 1.7e-287 986.5
Sed13g1939 . 1 899 Histidine Kinase Gene Family AT5G10720 57.7 4.7e-258 888.6
Sed11g0823 . 1 1121 Histidine Kinase Gene Family AT1G09570 79.1 0.0e+00 1807.7
Sed11g0824 . 1 1121 Histidine Kinase Gene Family AT1G09570 79.1 0.0e+00 1807.7
Sed11g0858 . 15 1114 Histidine Kinase Gene Family AT1G09570 71.1 0.0e+00 1598.6
Sed05g2127 . 18 1110 Histidine Kinase Gene Family AT1G09570 55.5 0.0e+00 1224.2
Sed05g2128 . 18 1110 Histidine Kinase Gene Family AT1G09570 55.5 0.0e+00 1224.2
Sed02g1136 . 27 1120 Histidine Kinase Gene Family AT1G09570 54.1 0.0e+00 1194.9
Sed12g0771 . 31 1124 Histidine Kinase Gene Family AT1G09570 53.5 0.0e+00 1178.7
Sed12g0772 . 31 1035 Histidine Kinase Gene Family AT1G09570 54.9 0.0e+00 1125.9
Sed12g0772 . 34 1065 Histidine Kinase Gene Family AT2G18790 78.1 0.0e+00 1640.2
Sed12g0771 . 34 1065 Histidine Kinase Gene Family AT2G18790 78.0 0.0e+00 1639.0
Sed02g1136 . 13 1061 Histidine Kinase Gene Family AT2G18790 77.4 0.0e+00 1634.0
Sed01g2201 . 7 1049 Histidine Kinase Gene Family AT2G18790 58.9 0.0e+00 1227.6
Sed01g2202 . 7 951 Histidine Kinase Gene Family AT2G18790 60.4 0.0e+00 1142.9
Sed11g0823 . 21 1055 Histidine Kinase Gene Family AT2G18790 52.7 1.8e-312 1069.7
Sed11g0824 . 21 1055 Histidine Kinase Gene Family AT2G18790 52.7 1.8e-312 1069.7
Sed05g2127 . 26 1067 Histidine Kinase Gene Family AT2G18790 51.9 5.3e-312 1068.1
Sed05g2128 . 26 1067 Histidine Kinase Gene Family AT2G18790 51.9 5.3e-312 1068.1
Sed11g0858 . 19 1047 Histidine Kinase Gene Family AT2G18790 51.4 1.4e-307 1053.5
Sed05g2127 . 12 1114 Histidine Kinase Gene Family AT5G35840 61.3 0.0e+00 1360.9
Sed05g2128 . 12 1114 Histidine Kinase Gene Family AT5G35840 61.3 0.0e+00 1360.9
Sed12g0771 . 31 1126 Histidine Kinase Gene Family AT5G35840 52.1 0.0e+00 1139.8
Sed02g1136 . 27 1122 Histidine Kinase Gene Family AT5G35840 52.3 0.0e+00 1132.1
Sed11g0823 . 9 1115 Histidine Kinase Gene Family AT5G35840 51.3 0.0e+00 1098.2
Sed11g0824 . 9 1115 Histidine Kinase Gene Family AT5G35840 51.3 0.0e+00 1098.2
Sed12g0772 . 31 1038 Histidine Kinase Gene Family AT5G35840 53.4 0.0e+00 1092.8
Sed02g1136 . 3 1122 Histidine Kinase Gene Family AT4G16250 74.9 0.0e+00 1691.4
Sed12g0771 . 34 1126 Histidine Kinase Gene Family AT4G16250 75.5 0.0e+00 1681.8
Sed12g0772 . 34 1063 Histidine Kinase Gene Family AT4G16250 75.6 0.0e+00 1584.3
Sed01g2201 . 30 1110 Histidine Kinase Gene Family AT4G16250 57.5 0.0e+00 1267.7
Sed01g2202 . 30 951 Histidine Kinase Gene Family AT4G16250 59.8 0.0e+00 1129.0
Sed11g0823 . 8 1116 Histidine Kinase Gene Family AT4G16250 51.9 0.0e+00 1112.8
Sed11g0824 . 8 1116 Histidine Kinase Gene Family AT4G16250 51.9 0.0e+00 1112.8
Sed05g2127 . 28 1113 Histidine Kinase Gene Family AT4G16250 51.7 0.0e+00 1109.4
Sed05g2128 . 28 1113 Histidine Kinase Gene Family AT4G16250 51.7 0.0e+00 1109.4
Sed11g0858 . 13 1112 Histidine Kinase Gene Family AT4G16250 50.5 0.0e+00 1090.5
Sed01g2201 . 13 1124 Histidine Kinase Gene Family AT4G18130 61.5 0.0e+00 1355.5
Sed02g1136 . 3 1120 Histidine Kinase Gene Family AT4G18130 57.3 0.0e+00 1274.6
Sed12g0771 . 43 1124 Histidine Kinase Gene Family AT4G18130 58.4 0.0e+00 1261.1
Sed01g2202 . 13 951 Histidine Kinase Gene Family AT4G18130 64.3 0.0e+00 1198.3
Sed12g0772 . 43 1065 Histidine Kinase Gene Family AT4G18130 58.7 0.0e+00 1192.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005785 2 0 2 1 2 1 2 1 1 1 1 1 2 1 0 2 1 2 2 1 1 1 1 1 1 1 1 2 2 1 38
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
38085 PF02518 HATPase_c 1.20E-23 CL0025 Sed TR