Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed04g0961 ATGGCAGAGGAGGATTCCCCTTCTCATTGTTCTGAAACTTTTTCTTCTTCTTCCCCTTCTTCAGTTCTCACTTCTCCAATGTCTACTCCTTTGAGGAAGGTGTTTTGTAGAATTTCAGGCCTTGCAACTTCTTTGAGAAGAAGCACTGTCCCTCACAGTAGAAGAATCTTTCACAGAGATGTTGAACAACAGGAGTTTCCATATGCAAACTCTCATTGCCTCTCTTCTTACTACAGTGTCTTTGTTGCTCGCCTTGCCATTATGGTGATGCTAGCTATTTTGATTGGGCTGCTGACAATTCTCACTTGGCATTTCACAAAGAGCTACACAGCACAGTCACTGAATAGCTTAGCTTATGGTCTTCGCCATGAACTGTTGCAGCGCCCGATCTTACGGATGTGGGGTGTCTTGAATTCCACTGCTGAAATAACCACAGCTCAGGTTAAGCTTTCAGAATATGTAATGAGGAAGTACAGCAAGCCTGCTAATCAAGCAGAGCAAGTTGAGTTGTATGAATCAATGAGGGACGTTACATGGGCGATGTTTGCGAGTCGAAAAGCTCTTAATGCCATAACCATCAATTACAAGAATGGCTTTGTTCAGGCATTCCATCGAGATCATAGAAGCAACAACACGTTTTATATTTACTCTGATCTCACAAACTATTCCATTAGTGCCACTGAATCGTATAATATCAATCGCCTTTCGTCGGGTGAAGGGTGGTCGGATCCACCCATACATGGAAATGTTTCTGCAAAGTGGTACAGGGAACCACTCGATCCCATTAGCGGCGAGAAGATCGGGAAAGCAAGGGAAATCCCACCGGAAGATTTGATTAATATTGCTGGGATTTCACAGGTAGCAGATGGTGTTGCCTCATGGCATGTCACTGTGAGCAAGTACATGGATACACCATTGCTTTCAGCCGCTCTGCCTGTTTCTGATGCTTCGAACGAAAGCATAGTTGCAGTCGTGGGTGTGACGACCGCACTTTCTAGCGTAGGTCAACTAATGAAGGAGCTTGTTGAGTTCCATAGTGGACATATTTATCTCACCTCTCAAGAGGGCTACTTGCTTGCTACTTCAGCCAATGCTCCCCTGTTAAGAAATACATCAAGGGGTCCAAAGCTTATGATGGCTGTCGATTCCCAGGACGACGTGATTCGGTCAGGAGCAGAGTGGTTACAGAAAACTTATGGAAACAATTTTCCCCCTGGTCATGAGGTCCATGAAGAGAATGTCAAGCTTGGTGATCAGCAATTTTACATCGACTCGTTTTTTCTTAATCTAAAGAGGCTTCCTATTGTGGGGGTTGTCATCATTCCTAGACAATACATAATGGGAAAGGTAGATGAGAGAGCTTTCAAGACATTGATTATACTGATTTCTGCATCCTTGTGCATCTTAGTTATTGGATGTCTATGCATTATGATTCTGACAAAAGGAGTATCCAAGGAAATGAAACTAAGAGCAGAACTGATAAGCCATCTTGATGCAAGAAGAAGGGCAGAGGCATCTAGTAATTACAAGAGTCAATTTCTAGCGAATATGAGTCATGAGCTAAGGACGCCAATGGCTGCAGTAATTGGATTGCTGGACATTCTAATGTGTGATGATTGTCTTAATAATGAACAATTTTCAACGGTTACTCAAATTCGAAACAGCTCAACATCTTTACTTCGACTTCTCAACAACATTCTAGATCTAAGCAAGGTTGAATCTGGAAAGCTGGTTTTGGAAGATGCAGAGTTTGACCTCGGACGAGATCTCGAAGGGCTTGTTGATATGTTTTCTGTGCAGTGCATCAACCATAATGTGGAGACTGTATTGGATCTCTCTGATGATATGCCGAAATTAGTTCGAGGAGACTCGGGTCGAGTTGTTCAAATATTCACAAATTTGATTAGCAATTCTATCAAATTCACAACTACTGGTCACATCATTCTTCGAGGGTGGTGTGAGACATCAAATGCTCTCAACGAAGTGGGAAAGTTTTGTAATGATCAGAAGAAAATACGATATCCGAATCGAATAAAGATGAAACAGCGGGACCCCACAAAGAATGCCTGCAAGAAAGAAAACAAAATGACCTTGTGGTTTGAACTTGATGACACTGGATGTGGAATTGATCCAAGCAAATGGGAGTCAGTTTTTGAAAGCTTCGAGCAGGCAGATCCCTCGACAACACGAACGCATGGTGGCACCGGTCTTGGACTATGCATCGTACGTACCTTGGTTAACAAGATGGGTGGAGAAATCAAGGTTGTAAAGAAGAACGGCCCGGGAACATTGATGAGATTTTATTTGGTTCTCAGTACGCCTGTAGATTCAACGGATCATCAATGTCAGCTTGATTTCGCACAACACAACGCAGTGGTACTACTTGCACTCCGTGGCAGCATGAGTCGGTTAATCACGTCGCAGTGGCTTCGTAAAATCGGACTGCTCACTTTAGAAGCTTCAGAGTGGAATGAACTGACACTAATCCTTCAGGAACTCTTTCAAGCCAGAAGCTCTGAAACTAAAAAGGGATATAATCCACAGGATTCACTTGGAGAACCATTACGAGCAGAGCTAATGAGAATAAAAGATATGAAAAGCCAAGTATTCATTATCGTTGCTGACATCGGGATACTCGACTTAAGCACTGATATTTGGAAGGACCAACTTTACTTCCTTGACAAGTACTCTGGAAAAGCAAAATTTGCCTGGATGTTGAACCACGATACGTCCAACGCCATTAAGATGGAGCTTCGGGGAAAAGGACACATTATAATGAACAACAAGCCACTGTACAAAGCAAAAATGATTCATATTCTAGAAGCTGTTATGAAGGAAAGAAATCTTGAGTTGCAGAGGAAAAATGCTTTAAGAACTGCATCAAAGGATGGGGATTATCATGAATGTCTTGAGATTGATTCCACTCAGTTTGATACTGCCAGCTCTGATGATTCTGATATATTTGAACTGGGTAATTCTAATTCTCAAAGTACAACATTTCAAGGGAAAGATGATCAAGAAGAAAAGTTAACAAAACCATCACAGTCACCAGTTCTGCCCATTAACAATAGCTTAGTTGAGTTAACTCATGCACATTCAAGCGATATACGGACTGGCGACTCGAGTGGCGCAAGGCCGAACTCATCAAAGCCTCAATGGAAAAGTTCTGAACCCAATGGACAGAACTTCGGATGCAACTATCCTACAAACCGAGGAGAATTGCATTCTAAGAATGTTCATGGTAAAAAGTCTCTCGAAGGGCTACGCATTTTGCTTGCAGAAGATACACCGGTTCTTCAAAAAGTAACGACGATAATGCTCGAAAAGATGGGAGCGATGGTCATCGCTGTCGGAGATGGACTGCTGGCTGTAGAAGCTCTAGCTGCTATGCTTAGTGCTGAAGAGCAAAGAAGGGAATGCCCCACAAGATATGACTTGGTATTAATGGATTGCCAAATGCCGAGGATGGATGGCTACGAAGCAACAAAAGCAATAAGGAATCTAGAAGTTGGATCGAGTCTTCACATTCCGATAGTAGCGTTGACTGCACACGCAATGTCGTCCGATGAAGCCAAATGCTTGGAGGTGGGAATGGATGCATATCTAACAAAGCCAATTGACTATAAGCTGATGGTATCCACCATACTTTCCCTCACTCAAACAAGAGGCTAA 3672 42.7 MAEEDSPSHCSETFSSSSPSSVLTSPMSTPLRKVFCRISGLATSLRRSTVPHSRRIFHRDVEQQEFPYANSHCLSSYYSVFVARLAIMVMLAILIGLLTILTWHFTKSYTAQSLNSLAYGLRHELLQRPILRMWGVLNSTAEITTAQVKLSEYVMRKYSKPANQAEQVELYESMRDVTWAMFASRKALNAITINYKNGFVQAFHRDHRSNNTFYIYSDLTNYSISATESYNINRLSSGEGWSDPPIHGNVSAKWYREPLDPISGEKIGKAREIPPEDLINIAGISQVADGVASWHVTVSKYMDTPLLSAALPVSDASNESIVAVVGVTTALSSVGQLMKELVEFHSGHIYLTSQEGYLLATSANAPLLRNTSRGPKLMMAVDSQDDVIRSGAEWLQKTYGNNFPPGHEVHEENVKLGDQQFYIDSFFLNLKRLPIVGVVIIPRQYIMGKVDERAFKTLIILISASLCILVIGCLCIMILTKGVSKEMKLRAELISHLDARRRAEASSNYKSQFLANMSHELRTPMAAVIGLLDILMCDDCLNNEQFSTVTQIRNSSTSLLRLLNNILDLSKVESGKLVLEDAEFDLGRDLEGLVDMFSVQCINHNVETVLDLSDDMPKLVRGDSGRVVQIFTNLISNSIKFTTTGHIILRGWCETSNALNEVGKFCNDQKKIRYPNRIKMKQRDPTKNACKKENKMTLWFELDDTGCGIDPSKWESVFESFEQADPSTTRTHGGTGLGLCIVRTLVNKMGGEIKVVKKNGPGTLMRFYLVLSTPVDSTDHQCQLDFAQHNAVVLLALRGSMSRLITSQWLRKIGLLTLEASEWNELTLILQELFQARSSETKKGYNPQDSLGEPLRAELMRIKDMKSQVFIIVADIGILDLSTDIWKDQLYFLDKYSGKAKFAWMLNHDTSNAIKMELRGKGHIIMNNKPLYKAKMIHILEAVMKERNLELQRKNALRTASKDGDYHECLEIDSTQFDTASSDDSDIFELGNSNSQSTTFQGKDDQEEKLTKPSQSPVLPINNSLVELTHAHSSDIRTGDSSGARPNSSKPQWKSSEPNGQNFGCNYPTNRGELHSKNVHGKKSLEGLRILLAEDTPVLQKVTTIMLEKMGAMVIAVGDGLLAVEALAAMLSAEEQRRECPTRYDLVLMDCQMPRMDGYEATKAIRNLEVGSSLHIPIVALTAHAMSSDEAKCLEVGMDAYLTKPIDYKLMVSTILSLTQTRG 1223
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 11139303 11145632 + Sed0009374.1 Sed04g0961 709564
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed04g0961 1223 PANTHER TWO-COMPONENT HISTIDINE KINASE 64 782 IPR050736 -
Sed04g0961 1223 Pfam His Kinase A (phospho-acceptor) domain 510 575 IPR003661 GO:0000155(InterPro)|GO:0007165(InterPro)
Sed04g0961 1223 Gene3D - 574 774 IPR036890 -
Sed04g0961 1223 SMART HisKA_10 509 575 IPR003661 GO:0000155(InterPro)|GO:0007165(InterPro)
Sed04g0961 1223 FunFam Histidine kinase 1-like protein 497 576 - -
Sed04g0961 1223 PRINTS Bacterial sensor protein C-terminal signature 698 712 IPR004358 GO:0016310(InterPro)|GO:0016772(InterPro)
Sed04g0961 1223 PRINTS Bacterial sensor protein C-terminal signature 716 726 IPR004358 GO:0016310(InterPro)|GO:0016772(InterPro)
Sed04g0961 1223 PRINTS Bacterial sensor protein C-terminal signature 733 751 IPR004358 GO:0016310(InterPro)|GO:0016772(InterPro)
Sed04g0961 1223 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 564 769 IPR036890 -
Sed04g0961 1223 MobiDBLite consensus disorder prediction 1032 1071 - -
Sed04g0961 1223 Gene3D - 1069 1220 - -
Sed04g0961 1223 SMART REC_2 1088 1215 IPR001789 GO:0000160(InterPro)
Sed04g0961 1223 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 622 770 IPR003594 -
Sed04g0961 1223 SMART HKATPase_4 622 773 IPR003594 -
Sed04g0961 1223 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 497 576 IPR036097 GO:0000155(InterPro)|GO:0007165(InterPro)
Sed04g0961 1223 Gene3D - 477 573 - -
Sed04g0961 1223 Pfam Response regulator receiver domain 1090 1214 IPR001789 GO:0000160(InterPro)
Sed04g0961 1223 ProSiteProfiles Histidine kinase domain profile. 516 773 IPR005467 -
Sed04g0961 1223 ProSiteProfiles Response regulatory domain profile. 1089 1219 IPR001789 GO:0000160(InterPro)
Sed04g0961 1223 CDD HisKA 510 571 IPR003661 GO:0000155(InterPro)|GO:0007165(InterPro)
Sed04g0961 1223 SUPERFAMILY CheY-like 1086 1220 IPR011006 -
Sed04g0961 1223 MobiDBLite consensus disorder prediction 1 27 - -
Sed04g0961 1223 MobiDBLite consensus disorder prediction 8 27 - -
Sed04g0961 1223 MobiDBLite consensus disorder prediction 992 1019 - -
Sed04g0961 1223 CDD REC_hyHK_CKI1_RcsC-like 1090 1215 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed04g0961 Sed-Chr4:11139303 Sed05g2083 Sed-Chr5:34029170 3.70E-40 dispersed
Sed04g0960 Sed-Chr4:11138346 Sed04g0961 Sed-Chr4:11139303 0.00E+00 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
38086 PF02518 HATPase_c 1.30E-23 CL0025 Sed TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed04g0961 - - - 0.0